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The map label for this gene is yfkR [H]

Identifier: 56965255

GI number: 56965255

Start: 3628049

End: 3629170

Strand: Direct

Name: yfkR [H]

Synonym: ABC3493

Alternate gene names: 56965255

Gene position: 3628049-3629170 (Clockwise)

Preceding gene: 56965254

Following gene: 56965258

Centisome position: 84.3

GC content: 42.42

Gene sequence:

>1122_bases
GTGAAAGCGATTCAAGCAGTCCTTATGCTAATCCTGTTAACGGGCTGTTGGGACCAGCGGCTCGTCAAAGATATTAATTT
AATTTATAGCCAAGCACTCGACCAAACGCATGATGGAAAAATTGAAACAACGATTGTAACAATCGGTGCTGGCACACAAA
ACCAGTCTGGAGCTACGGTAGGCACTTCGACGATGCCCGCGATTATCTCAGCCGTTGGGACGACTCCACGGGACAGCCGC
ATCCAATTGAATAGGAAAGTGTCAGGCGATTTGTTTGCCTCCAAAAACCGGGTCACGTTATTAAGCAGAGGACTGGCCGA
ACAAAATATTTACTCAATACTTGATGTGCACTACCGCTCTCCTGTTAGCACGACCAATGCACGCATCAGTATTGTCAATG
GGCCAGCTAAAGACGCCCTCCATGTAAAAACGGCAGAAACACCGCTTATTAGCAATTACTTAGGGGACCTGCTCTACGGC
TTAGAAAACACAGGGAATATTCCAACAACTTCGCTAGAAGATATCCTTTCCTTACTCTTTGATAAAGGCACCGATTTTGT
TTTGCCACTTCTTCATGTAATGGACCACCATAATATTGAGTTGCACGGGGTGGCTTTGTTTAATCAAAACAAAATGTCAG
GTGAATTAAGCGCGGACCAAACATTGCGCTTGTTGTTATTAGATCAAAAACAAGACAAAGAACCGCGCTTAAATATCAAA
GTAAGCAATGACAATGCGATAAAAGCGAACAATTATGCAACGGTAGATATAGAGGACCGCAAATCGAACATGAAATTAAC
GAAAAACAGCGCTGGCCAATTCCAAGTCGGATTTGATGTGAAATTGACTTTAAATGTCATTGAATACCCGAAAGACTCAC
TTTACATTCAAGAGAATGTCGATGATTTGAATAACCGCATTACCGCGCAATTAACAAAAGAGTGCGAAGAAGTGATCCAA
ATCATTCAAGCAGCAAACTGCGATTATTACGGGATTGGCAAACATATGCGTGCTTTTTATTACGGCGATTGGCAAAACAC
CGATTGGAAAGAATTATATCCGCAAATACCGATTTCGGTTAACCTGGACACGGAAATTCTTTACCATGGCATTGTCAACT
AA

Upstream 100 bases:

>100_bases
AAATGATAACAAGAACAGACGAGTTTGGTACAATAATGAACGCTGCCATTCCTTTGCTTATGCTTCTAATTGCTATCGTC
TTTAAAAGGAGGTCGAAAGT

Downstream 100 bases:

>100_bases
TGATCCGCGCCAAGCATATCCGACATGTATGTAAATGGCTATTAAAAAGGTGTTTCACCACTAAAGATAGCGGACAACGC
GAGCGCTCTGACGAACGCCC

Product: spore germination protein KC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 373; Mature: 373

Protein sequence:

>373_residues
MKAIQAVLMLILLTGCWDQRLVKDINLIYSQALDQTHDGKIETTIVTIGAGTQNQSGATVGTSTMPAIISAVGTTPRDSR
IQLNRKVSGDLFASKNRVTLLSRGLAEQNIYSILDVHYRSPVSTTNARISIVNGPAKDALHVKTAETPLISNYLGDLLYG
LENTGNIPTTSLEDILSLLFDKGTDFVLPLLHVMDHHNIELHGVALFNQNKMSGELSADQTLRLLLLDQKQDKEPRLNIK
VSNDNAIKANNYATVDIEDRKSNMKLTKNSAGQFQVGFDVKLTLNVIEYPKDSLYIQENVDDLNNRITAQLTKECEEVIQ
IIQAANCDYYGIGKHMRAFYYGDWQNTDWKELYPQIPISVNLDTEILYHGIVN

Sequences:

>Translated_373_residues
MKAIQAVLMLILLTGCWDQRLVKDINLIYSQALDQTHDGKIETTIVTIGAGTQNQSGATVGTSTMPAIISAVGTTPRDSR
IQLNRKVSGDLFASKNRVTLLSRGLAEQNIYSILDVHYRSPVSTTNARISIVNGPAKDALHVKTAETPLISNYLGDLLYG
LENTGNIPTTSLEDILSLLFDKGTDFVLPLLHVMDHHNIELHGVALFNQNKMSGELSADQTLRLLLLDQKQDKEPRLNIK
VSNDNAIKANNYATVDIEDRKSNMKLTKNSAGQFQVGFDVKLTLNVIEYPKDSLYIQENVDDLNNRITAQLTKECEEVIQ
IIQAANCDYYGIGKHMRAFYYGDWQNTDWKELYPQIPISVNLDTEILYHGIVN
>Mature_373_residues
MKAIQAVLMLILLTGCWDQRLVKDINLIYSQALDQTHDGKIETTIVTIGAGTQNQSGATVGTSTMPAIISAVGTTPRDSR
IQLNRKVSGDLFASKNRVTLLSRGLAEQNIYSILDVHYRSPVSTTNARISIVNGPAKDALHVKTAETPLISNYLGDLLYG
LENTGNIPTTSLEDILSLLFDKGTDFVLPLLHVMDHHNIELHGVALFNQNKMSGELSADQTLRLLLLDQKQDKEPRLNIK
VSNDNAIKANNYATVDIEDRKSNMKLTKNSAGQFQVGFDVKLTLNVIEYPKDSLYIQENVDDLNNRITAQLTKECEEVIQ
IIQAANCDYYGIGKHMRAFYYGDWQNTDWKELYPQIPISVNLDTEILYHGIVN

Specific function: May be involved in spore germination [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gerABKC lipoprotein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008844 [H]

Pfam domain/function: PF05504 Spore_GerAC [H]

EC number: NA

Molecular weight: Translated: 41592; Mature: 41592

Theoretical pI: Translated: 5.60; Mature: 5.60

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAIQAVLMLILLTGCWDQRLVKDINLIYSQALDQTHDGKIETTIVTIGAGTQNQSGATV
CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCEE
GTSTMPAIISAVGTTPRDSRIQLNRKVSGDLFASKNRVTLLSRGLAEQNIYSILDVHYRS
CCCHHHHHHHHHCCCCCCCEEEEECCCCCCEEECCCCEEEECCCCCHHHHHHHHHHHHCC
PVSTTNARISIVNGPAKDALHVKTAETPLISNYLGDLLYGLENTGNIPTTSLEDILSLLF
CCCCCCCEEEEEECCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
DKGTDFVLPLLHVMDHHNIELHGVALFNQNKMSGELSADQTLRLLLLDQKQDKEPRLNIK
CCCCCHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCEEEEE
VSNDNAIKANNYATVDIEDRKSNMKLTKNSAGQFQVGFDVKLTLNVIEYPKDSLYIQENV
ECCCCEEEECCEEEEEEECCCCCCEEEECCCCEEEEEEEEEEEEEEEECCCCCEEEECCH
DDLNNRITAQLTKECEEVIQIIQAANCDYYGIGKHMRAFYYGDWQNTDWKELYPQIPISV
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCEEEEEECCCCCCCHHHHCCCCCEEE
NLDTEILYHGIVN
ECCHHHHHCCCCC
>Mature Secondary Structure
MKAIQAVLMLILLTGCWDQRLVKDINLIYSQALDQTHDGKIETTIVTIGAGTQNQSGATV
CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCEE
GTSTMPAIISAVGTTPRDSRIQLNRKVSGDLFASKNRVTLLSRGLAEQNIYSILDVHYRS
CCCHHHHHHHHHCCCCCCCEEEEECCCCCCEEECCCCEEEECCCCCHHHHHHHHHHHHCC
PVSTTNARISIVNGPAKDALHVKTAETPLISNYLGDLLYGLENTGNIPTTSLEDILSLLF
CCCCCCCEEEEEECCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
DKGTDFVLPLLHVMDHHNIELHGVALFNQNKMSGELSADQTLRLLLLDQKQDKEPRLNIK
CCCCCHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCEEEEE
VSNDNAIKANNYATVDIEDRKSNMKLTKNSAGQFQVGFDVKLTLNVIEYPKDSLYIQENV
ECCCCEEEECCEEEEEEECCCCCCEEEECCCCEEEEEEEEEEEEEEEECCCCCEEEECCH
DDLNNRITAQLTKECEEVIQIIQAANCDYYGIGKHMRAFYYGDWQNTDWKELYPQIPISV
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCEEEEEECCCCCCCHHHHCCCCCEEE
NLDTEILYHGIVN
ECCHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9272861; 9384377 [H]