| Definition | Bacillus clausii KSM-K16, complete genome. |
|---|---|
| Accession | NC_006582 |
| Length | 4,303,871 |
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The map label for this gene is malS [H]
Identifier: 56963376
GI number: 56963376
Start: 1735571
End: 1738438
Strand: Direct
Name: malS [H]
Synonym: ABC1611
Alternate gene names: 56963376
Gene position: 1735571-1738438 (Clockwise)
Preceding gene: 56963368
Following gene: 56963380
Centisome position: 40.33
GC content: 48.64
Gene sequence:
>2868_bases TTGATTAATATAAGGAAAACAAAAGTTTTTTTAGCATGTATAGTTATGGTAACGTTTTCATTTTTGTTATCTACTTCCTC TGTGAATGACGCATATGCTTCGCAAAACAGCGACCAGAAACCATTTTCATGGGATAATGCAACGGTTTATTTTGCTATTA CTGACCGCTTTAACGACGGTAATCGAGGCAATAACGATTCATATGGCCGGCCACAAAAAGACGCTTGGGGCCAAAACATC GGAACGTTTCATGGTGGGGATCTCCAAGGGTTAACCGATAAGCTCAATGAAGGGTATTTCACAGATCTAGGGATCAATAC GATTTGGATTTCGGCTCCTTATGAACAGATCCATGGCTGGGTCGGCGGCGGCTCAGATGGCGATTTTGCTCATTATGCAT ACCATGGCTATTATGCGTTGGATTATACGACGGTCGATCAAAATATGGGGACAGTCGAGGAAATGCGAGAGTTCGTCAAC ACAGCCCACGAACAAGGAATTCGCGTCGTCTTAGATGTGGTGATGAACCATCCAGGCTACAACACCATTAAAGATATGAA TGAATATGGCTTCGGAAATCCAGGCGTATCCGAGGATTGGACACCAGGTGAAGGGCAAACTTGGCACGATGTCCACAACC ATATTCATTATGATGATGCTTCGCCGTGGAGCACATGGTGGGGACCTTGGGTTCGCGCAGGAATTGGCGGATATGAATCG TGTGGAAACAGTGAAACCACAATGTGCTTAGCCGGTTTGCCCGACTTCCGGACGGAGCTCACACATAGTGTCGGCTTGCC TCCCTTGTTAGAGACGAAGTGGAGCCAAGAGCGACGAGAGGGGTATGAGGACTGGATCGTTCCAACTGCGAGCGACCTAC GCCGTGATCTAGACATAGCTCCGGCAGATTATATTGTGCAATGGCTCGCCGCTTGGGTCGAGGAATTTGGAATTGATGGC TTTCGTATCGACACGGCCAAACATGTGGAGTTGTTCCGTTGGCAGCAGTTAAAGGATGCAGCGAATGAAGCGCTGTGGTC ATGGCGTGAAGAAAACCCAGATGCACCAGGGGCGAGCTGGACGGATGACTTTTGGATGGTAGGCGAAGTGTGGGGCCATG GTGTCGGACGAAGCGAATACTTTGATTACGGATTCGATTCAATCATTAATTTTACATTCCAAGGGGAACATGGGAACGGT CCCGCTTACCGATTGGACACAATGGAAGACACTTTTTCCCACTATGCAAATCAGATCAATATGGACGCGTCTTTCAATGT GCTAAGCTATCTTTCTCAGCATGATACGCACTTATATCCACGGGAGCGCCTAGTTGATGGCGGCACGTATTTAATGCTCC TTCCTGGCGGGGTCAAATTGTTTTATGGCGATGAGACAGCACGGCCATTTGGGCCGACTGGATCTGATCCCCAGCAAGGC ACACGTTCATCGATGAACTGGGATTCTGTGCATGAGGATGTATTAAGCCATTGGCAAAAGATGGGGCAATTTCGAAATAA CCATTTAGCGATAGGGGCAGGAGCGCACAAGCAAATTGGCACAAATCCGTATACATTTAGCCGCACCTACGTGGAGGATG GGGTCGATGATCGTGTTGTCGTGACAGTCGGGGCAACGGGTGAAACGACGATTGATGTTTCCTCTGTTTTTTCCGACGGG CAGACAGTCCGTGACTTTTATACGGGAGACAGCACGGTCGTTGAAAACGGGAAAGCGACATTTGCAGCCCATCAAAATGG CGTCATTTTAGTGGAAACCGAAGGAGAGACGATTCCTTCCGTATCTGCTTCGCCTCAAGGCGGGGAGTTTTCTAGTGAAG AACTTGAAGTCACACTCAGTGTGCTGCAAGCGGAGTCGGGCGCATATACAATCGACGGTTCTGATCCGAAGGAAAAGGGA ACACCCTTTGCCGATGGGGAGGTGCTGACCATCGGGAGTGACTTGGCTATTGATGAGTCGCTGACATTGCGGCTTTTTGC AAAAAATGAAGCAGGTGAAGCGGAAGCGGAATATACCTTTACGAAGGTACCGCCTTATCCCCACGTTTTTGCTGATCCGC CTGGCGGTTCCTTTTCCGGTGATTCGTTAGAGGTGACGCTTCACGTGCAAAACGTAGGAGAAGGGGCATACTCGGTTAAT GGAGCTGCCGAACAATCCTTTATGGATGGCGATGCCATTACGATTGGGGAAGGGACGGAAGCCGGAGAAGAGGTAACGCT TCAGCTCAAGGCGGAGAACGAATTCGGCTCTACTGAAGAAATGTATACGTTTATAAAATCGCCAGGGCTAACCGCTTACT TCAAAAACCCTGACACATGGGGGACACCGCACATTTACTATTACGAAACAGAGCCTAAAGTGGAGGAACCATCATGGGGT TCAGCGCCAGAAATGGAGCTTGTCGAGAATGGCTGGTATAAGTACACAATCGAAGGGGCAGAAAGTGCGCGCGTGTTATT TAAAGATGCTGGCGCTAATCAATGGCCAGGGCCTGGAGAGGAGGGGTTTTATCGAGACCAAGACGGGTGGTTTGATGGGG AATGGCATTCCGAAAAACCTGTCCAAGCAAATGACATTACGATTTACTATAAGACTAGTTGGACCAATCCACACATTCAT TACTCTCTCAACCAAGAAGCTTGGACCACTTTGCCAGGGGTGCCGCTAAATTCGTCGGAGTATGAAGGCTACGCGAAAAT AACAATTGAAACAGAAGAGGGAAGCCAGCTCAGGGCAGCTTTTAATAATGGGCGTGGACAATGGGACAACAATCAGGGAA GAGACTACGTCTTCCATTCAGGAATAAATACATTAGCAGATGGCGTGATAGTCAGGGGCACGCCTTAG
Upstream 100 bases:
>100_bases TGGTTTTCGATTTGAAAGCGTTTTCTGAAGGTGGGCTCCACTTGTTTTTTGTCTGTTTGTGCAAACGTTTGCTTAAAAAT GGCAAAGGAGAGGAAAAATC
Downstream 100 bases:
>100_bases GAAGGGATCGCTTGGACCTACTACCGCCTTGGGTACGCTGACAAAAGAGGTGGAGGCGGCGCAAAAAGGCGATATCGGAA AATAGCTCGGTTTTTGTGTA
Product: alpha-amylase
Products: NA
Alternate protein names: 1,4-alpha-D-glucan glucanohydrolase [H]
Number of amino acids: Translated: 955; Mature: 955
Protein sequence:
>955_residues MINIRKTKVFLACIVMVTFSFLLSTSSVNDAYASQNSDQKPFSWDNATVYFAITDRFNDGNRGNNDSYGRPQKDAWGQNI GTFHGGDLQGLTDKLNEGYFTDLGINTIWISAPYEQIHGWVGGGSDGDFAHYAYHGYYALDYTTVDQNMGTVEEMREFVN TAHEQGIRVVLDVVMNHPGYNTIKDMNEYGFGNPGVSEDWTPGEGQTWHDVHNHIHYDDASPWSTWWGPWVRAGIGGYES CGNSETTMCLAGLPDFRTELTHSVGLPPLLETKWSQERREGYEDWIVPTASDLRRDLDIAPADYIVQWLAAWVEEFGIDG FRIDTAKHVELFRWQQLKDAANEALWSWREENPDAPGASWTDDFWMVGEVWGHGVGRSEYFDYGFDSIINFTFQGEHGNG PAYRLDTMEDTFSHYANQINMDASFNVLSYLSQHDTHLYPRERLVDGGTYLMLLPGGVKLFYGDETARPFGPTGSDPQQG TRSSMNWDSVHEDVLSHWQKMGQFRNNHLAIGAGAHKQIGTNPYTFSRTYVEDGVDDRVVVTVGATGETTIDVSSVFSDG QTVRDFYTGDSTVVENGKATFAAHQNGVILVETEGETIPSVSASPQGGEFSSEELEVTLSVLQAESGAYTIDGSDPKEKG TPFADGEVLTIGSDLAIDESLTLRLFAKNEAGEAEAEYTFTKVPPYPHVFADPPGGSFSGDSLEVTLHVQNVGEGAYSVN GAAEQSFMDGDAITIGEGTEAGEEVTLQLKAENEFGSTEEMYTFIKSPGLTAYFKNPDTWGTPHIYYYETEPKVEEPSWG SAPEMELVENGWYKYTIEGAESARVLFKDAGANQWPGPGEEGFYRDQDGWFDGEWHSEKPVQANDITIYYKTSWTNPHIH YSLNQEAWTTLPGVPLNSSEYEGYAKITIETEEGSQLRAAFNNGRGQWDNNQGRDYVFHSGINTLADGVIVRGTP
Sequences:
>Translated_955_residues MINIRKTKVFLACIVMVTFSFLLSTSSVNDAYASQNSDQKPFSWDNATVYFAITDRFNDGNRGNNDSYGRPQKDAWGQNI GTFHGGDLQGLTDKLNEGYFTDLGINTIWISAPYEQIHGWVGGGSDGDFAHYAYHGYYALDYTTVDQNMGTVEEMREFVN TAHEQGIRVVLDVVMNHPGYNTIKDMNEYGFGNPGVSEDWTPGEGQTWHDVHNHIHYDDASPWSTWWGPWVRAGIGGYES CGNSETTMCLAGLPDFRTELTHSVGLPPLLETKWSQERREGYEDWIVPTASDLRRDLDIAPADYIVQWLAAWVEEFGIDG FRIDTAKHVELFRWQQLKDAANEALWSWREENPDAPGASWTDDFWMVGEVWGHGVGRSEYFDYGFDSIINFTFQGEHGNG PAYRLDTMEDTFSHYANQINMDASFNVLSYLSQHDTHLYPRERLVDGGTYLMLLPGGVKLFYGDETARPFGPTGSDPQQG TRSSMNWDSVHEDVLSHWQKMGQFRNNHLAIGAGAHKQIGTNPYTFSRTYVEDGVDDRVVVTVGATGETTIDVSSVFSDG QTVRDFYTGDSTVVENGKATFAAHQNGVILVETEGETIPSVSASPQGGEFSSEELEVTLSVLQAESGAYTIDGSDPKEKG TPFADGEVLTIGSDLAIDESLTLRLFAKNEAGEAEAEYTFTKVPPYPHVFADPPGGSFSGDSLEVTLHVQNVGEGAYSVN GAAEQSFMDGDAITIGEGTEAGEEVTLQLKAENEFGSTEEMYTFIKSPGLTAYFKNPDTWGTPHIYYYETEPKVEEPSWG SAPEMELVENGWYKYTIEGAESARVLFKDAGANQWPGPGEEGFYRDQDGWFDGEWHSEKPVQANDITIYYKTSWTNPHIH YSLNQEAWTTLPGVPLNSSEYEGYAKITIETEEGSQLRAAFNNGRGQWDNNQGRDYVFHSGINTLADGVIVRGTP >Mature_955_residues MINIRKTKVFLACIVMVTFSFLLSTSSVNDAYASQNSDQKPFSWDNATVYFAITDRFNDGNRGNNDSYGRPQKDAWGQNI GTFHGGDLQGLTDKLNEGYFTDLGINTIWISAPYEQIHGWVGGGSDGDFAHYAYHGYYALDYTTVDQNMGTVEEMREFVN TAHEQGIRVVLDVVMNHPGYNTIKDMNEYGFGNPGVSEDWTPGEGQTWHDVHNHIHYDDASPWSTWWGPWVRAGIGGYES CGNSETTMCLAGLPDFRTELTHSVGLPPLLETKWSQERREGYEDWIVPTASDLRRDLDIAPADYIVQWLAAWVEEFGIDG FRIDTAKHVELFRWQQLKDAANEALWSWREENPDAPGASWTDDFWMVGEVWGHGVGRSEYFDYGFDSIINFTFQGEHGNG PAYRLDTMEDTFSHYANQINMDASFNVLSYLSQHDTHLYPRERLVDGGTYLMLLPGGVKLFYGDETARPFGPTGSDPQQG TRSSMNWDSVHEDVLSHWQKMGQFRNNHLAIGAGAHKQIGTNPYTFSRTYVEDGVDDRVVVTVGATGETTIDVSSVFSDG QTVRDFYTGDSTVVENGKATFAAHQNGVILVETEGETIPSVSASPQGGEFSSEELEVTLSVLQAESGAYTIDGSDPKEKG TPFADGEVLTIGSDLAIDESLTLRLFAKNEAGEAEAEYTFTKVPPYPHVFADPPGGSFSGDSLEVTLHVQNVGEGAYSVN GAAEQSFMDGDAITIGEGTEAGEEVTLQLKAENEFGSTEEMYTFIKSPGLTAYFKNPDTWGTPHIYYYETEPKVEEPSWG SAPEMELVENGWYKYTIEGAESARVLFKDAGANQWPGPGEEGFYRDQDGWFDGEWHSEKPVQANDITIYYKTSWTNPHIH YSLNQEAWTTLPGVPLNSSEYEGYAKITIETEEGSQLRAAFNNGRGQWDNNQGRDYVFHSGINTLADGVIVRGTP
Specific function: Since only maltooligosaccharides up to a chain length of 6 glucose units are actively transported through the cytoplasmic membrane via the membrane-bound complex of three proteins, MalF, MalG, and MalK, longer maltooligosaccharides must first be degraded
COG id: COG0366
COG function: function code G; Glycosidases
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 13 family [H]
Homologues:
Organism=Escherichia coli, GI1789995, Length=525, Percent_Identity=48.3809523809524, Blast_Score=468, Evalue=1e-133,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014635 - InterPro: IPR006047 - InterPro: IPR006589 - InterPro: IPR017853 - InterPro: IPR013781 [H]
Pfam domain/function: PF00128 Alpha-amylase [H]
EC number: =3.2.1.1 [H]
Molecular weight: Translated: 106248; Mature: 106248
Theoretical pI: Translated: 4.19; Mature: 4.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MINIRKTKVFLACIVMVTFSFLLSTSSVNDAYASQNSDQKPFSWDNATVYFAITDRFNDG CCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCEEEEEEEECCCCC NRGNNDSYGRPQKDAWGQNIGTFHGGDLQGLTDKLNEGYFTDLGINTIWISAPYEQIHGW CCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHCCCEEEECCCEEEEEECCHHHHCEE VGGGSDGDFAHYAYHGYYALDYTTVDQNMGTVEEMREFVNTAHEQGIRVVLDVVMNHPGY CCCCCCCCEEEEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHCCHHEEEHHHHCCCCC NTIKDMNEYGFGNPGVSEDWTPGEGQTWHDVHNHIHYDDASPWSTWWGPWVRAGIGGYES CHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCEEECCCCCCCCHHCCHHHHHCCCCCHH CGNSETTMCLAGLPDFRTELTHSVGLPPLLETKWSQERREGYEDWIVPTASDLRRDLDIA CCCCCCEEEEECCCHHHHHHHHHCCCCCHHHCHHHHHHHCCCHHCCCCCHHHHHHCCCCC PADYIVQWLAAWVEEFGIDGFRIDTAKHVELFRWQQLKDAANEALWSWREENPDAPGASW CHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC TDDFWMVGEVWGHGVGRSEYFDYGFDSIINFTFQGEHGNGPAYRLDTMEDTFSHYANQIN CCCEEEEHHHHCCCCCCCCCCCCCCHHHEEEEEECCCCCCCEEEECCHHHHHHHHHHEEC MDASFNVLSYLSQHDTHLYPRERLVDGGTYLMLLPGGVKLFYGDETARPFGPTGSDPQQG CCCCHHHHHHHHHCCCCCCCHHHEECCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCCC TRSSMNWDSVHEDVLSHWQKMGQFRNNHLAIGAGAHKQIGTNPYTFSRTYVEDGVDDRVV CCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEEEEHHHHCCCCCEEE VTVGATGETTIDVSSVFSDGQTVRDFYTGDSTVVENGKATFAAHQNGVILVETEGETIPS EEECCCCCCEEEHHHHHCCCCEEEHEECCCCEEEECCCEEEEECCCCEEEEEECCCCCCC VSASPQGGEFSSEELEVTLSVLQAESGAYTIDGSDPKEKGTPFADGEVLTIGSDLAIDES CCCCCCCCCCCCHHHEEEEEEEECCCCCEEECCCCCHHCCCCCCCCEEEEECCCCEECCC LTLRLFAKNEAGEAEAEYTFTKVPPYPHVFADPPGGSFSGDSLEVTLHVQNVGEGAYSVN EEEEEEECCCCCCCCCCEEEEECCCCCEEEECCCCCCCCCCEEEEEEEEEECCCCCEECC GAAEQSFMDGDAITIGEGTEAGEEVTLQLKAENEFGSTEEMYTFIKSPGLTAYFKNPDTW CCHHHHCCCCCEEEECCCCCCCCEEEEEEEECCCCCCHHHHHHHHCCCCCEEEECCCCCC GTPHIYYYETEPKVEEPSWGSAPEMELVENGWYKYTIEGAESARVLFKDAGANQWPGPGE CCCEEEEEECCCCCCCCCCCCCCCHHHHHCCCEEEEECCCCCEEEEEEECCCCCCCCCCC EGFYRDQDGWFDGEWHSEKPVQANDITIYYKTSWTNPHIHYSLNQEAWTTLPGVPLNSSE CCCEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCHHHCCCCCCCCCCC YEGYAKITIETEEGSQLRAAFNNGRGQWDNNQGRDYVFHSGINTLADGVIVRGTP CCCEEEEEEECCCCCEEHHHHHCCCCCCCCCCCCCEEEECCCHHHHCCEEEECCC >Mature Secondary Structure MINIRKTKVFLACIVMVTFSFLLSTSSVNDAYASQNSDQKPFSWDNATVYFAITDRFNDG CCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCEEEEEEEECCCCC NRGNNDSYGRPQKDAWGQNIGTFHGGDLQGLTDKLNEGYFTDLGINTIWISAPYEQIHGW CCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHCCCEEEECCCEEEEEECCHHHHCEE VGGGSDGDFAHYAYHGYYALDYTTVDQNMGTVEEMREFVNTAHEQGIRVVLDVVMNHPGY CCCCCCCCEEEEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHCCHHEEEHHHHCCCCC NTIKDMNEYGFGNPGVSEDWTPGEGQTWHDVHNHIHYDDASPWSTWWGPWVRAGIGGYES CHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCEEECCCCCCCCHHCCHHHHHCCCCCHH CGNSETTMCLAGLPDFRTELTHSVGLPPLLETKWSQERREGYEDWIVPTASDLRRDLDIA CCCCCCEEEEECCCHHHHHHHHHCCCCCHHHCHHHHHHHCCCHHCCCCCHHHHHHCCCCC PADYIVQWLAAWVEEFGIDGFRIDTAKHVELFRWQQLKDAANEALWSWREENPDAPGASW CHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC TDDFWMVGEVWGHGVGRSEYFDYGFDSIINFTFQGEHGNGPAYRLDTMEDTFSHYANQIN CCCEEEEHHHHCCCCCCCCCCCCCCHHHEEEEEECCCCCCCEEEECCHHHHHHHHHHEEC MDASFNVLSYLSQHDTHLYPRERLVDGGTYLMLLPGGVKLFYGDETARPFGPTGSDPQQG CCCCHHHHHHHHHCCCCCCCHHHEECCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCCC TRSSMNWDSVHEDVLSHWQKMGQFRNNHLAIGAGAHKQIGTNPYTFSRTYVEDGVDDRVV CCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEEEEHHHHCCCCCEEE VTVGATGETTIDVSSVFSDGQTVRDFYTGDSTVVENGKATFAAHQNGVILVETEGETIPS EEECCCCCCEEEHHHHHCCCCEEEHEECCCCEEEECCCEEEEECCCCEEEEEECCCCCCC VSASPQGGEFSSEELEVTLSVLQAESGAYTIDGSDPKEKGTPFADGEVLTIGSDLAIDES CCCCCCCCCCCCHHHEEEEEEEECCCCCEEECCCCCHHCCCCCCCCEEEEECCCCEECCC LTLRLFAKNEAGEAEAEYTFTKVPPYPHVFADPPGGSFSGDSLEVTLHVQNVGEGAYSVN EEEEEEECCCCCCCCCCEEEEECCCCCEEEECCCCCCCCCCEEEEEEEEEECCCCCEECC GAAEQSFMDGDAITIGEGTEAGEEVTLQLKAENEFGSTEEMYTFIKSPGLTAYFKNPDTW CCHHHHCCCCCEEEECCCCCCCCEEEEEEEECCCCCCHHHHHHHHCCCCCEEEECCCCCC GTPHIYYYETEPKVEEPSWGSAPEMELVENGWYKYTIEGAESARVLFKDAGANQWPGPGE CCCEEEEEECCCCCCCCCCCCCCCHHHHHCCCEEEEECCCCCEEEEEEECCCCCCCCCCC EGFYRDQDGWFDGEWHSEKPVQANDITIYYKTSWTNPHIHYSLNQEAWTTLPGVPLNSSE CCCEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCHHHCCCCCCCCCCC YEGYAKITIETEEGSQLRAAFNNGRGQWDNNQGRDYVFHSGINTLADGVIVRGTP CCCEEEEEEECCCCCEEHHHHHCCCCCCCCCCCCCEEEECCCHHHHCCEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1544897; 8041620; 9278503; 9268356 [H]