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The map label for this gene is ypdF [C]

Identifier: 55981605

GI number: 55981605

Start: 1550495

End: 1551625

Strand: Direct

Name: ypdF [C]

Synonym: TTHA1636

Alternate gene names: 55981605

Gene position: 1550495-1551625 (Clockwise)

Preceding gene: 55981600

Following gene: 55981606

Centisome position: 83.82

GC content: 69.94

Gene sequence:

>1131_bases
ATGGAGCTACGGGCGGTGCAGGAGGTCCTAAAGGAAGAACGCCTGGACGGCTGGCTTCTTTATAGCTTTGGCGGGAGCAA
CCCCCTGGCCCTCGAGGTCCTGGGCCTCGCCCACCTCCACCTCACCCGCCGCTTCGCCTACCTCATCCCCCGGGAAGGAG
CACCCACCCTCCTCTGCCACGCCATTGAGGCAAGCCTCTTCCCTCCCCTCCCCGGAAACCGGAAGACCTACCACACCTGG
AGGGGCTTCCTGGAGGGCCTCGCCCACCTCCTTGGGGGGATGAGGCGCGTGGCCTTGGAGTACGTCCCGGGGGGGCAGAT
CCCCTACCTCTCCCGGGTGGACGGGGGCACCCTGGACCTCCTCCGGGGCCTGGGCCTCGAGCTCGCCTCCTCCTGGCCCC
TCCTCCTCCTCTTCCAGACCTGGGACGAAGAAAGGCTGCAAAGCCACCGGCGGGCGGCGGCCGGCCTCGCCCGGGCCAAG
GATCTGGCCCTGGACTTCCTGCGCCAAAACCCCGAGGCCAGCGAGCGGGAGGTCCAAAGCGTGCTCGTCCGGGCCTTGGA
GGGGGAGGGGCTCATCTTTGACCACCCCCCCATGGTGGCCTTCGGGAAAAACGCCGCCAACCCCCACCACGAACCCTCCG
AGGTCCGCCTGGAGGAAGGGGCGGTGGTCCTTCTGGACCTGTGGGCCAAAGCACCTGGGGGGGTCTACGCCGACCTCACC
TGGATGGCGGGGAAAAGGCCCCCGGAGGCGGCCCACCGGGCCTTCCAAGCGGTGGCCCGGGCGCGGGACGAGGCCATCGC
CTTCGTGGAAAGGGCCTACCGGGAAGGCCGCTACCCCAAGGGCTTTGAGGTGGACCGCCTGGCGCGCAAGGTCCTGGAGG
AGGAGGGCTATGGCCCCTACATCCGCCACCGCACCGGGCACAACCTGGGGGAGGAGGTCCACGGCTCCGGGCCCCACCTG
GACGACCTGGAAACCCACGACCTCCGCCCCCTGGTGCCGGGCCTGGCCTTCACCGTGGAGCCCGGGGTCTACCTGGAGGC
CTTCGGCGTGCGCACCGAGGTGGACGTCTACCTCCACCCCACGGGCCCCGAGGTCACCACCCCCCTCCAGGAGGCCATTA
CCCCGCTTTAG

Upstream 100 bases:

>100_bases
CCGCCTCTTGGGTTTCCACCATGCCGAACCTCCTTACCCCTAAGGCTAGCACGGAAGGGGTAGGAGAAGGTGAGGGAGCT
TCCAGAGGTAGGATGGACCC

Downstream 100 bases:

>100_bases
GGGGGCGTGGTATCTTGGGGGACGGCATGGACCGCCCCCTCTTGATCTTCTCCGGCCAGTCCAACCGGCCCCTGGCCCAG
GCCATCGCCGAGGCTTTAGG

Product: Xaa-pro aminopeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 376; Mature: 376

Protein sequence:

>376_residues
MELRAVQEVLKEERLDGWLLYSFGGSNPLALEVLGLAHLHLTRRFAYLIPREGAPTLLCHAIEASLFPPLPGNRKTYHTW
RGFLEGLAHLLGGMRRVALEYVPGGQIPYLSRVDGGTLDLLRGLGLELASSWPLLLLFQTWDEERLQSHRRAAAGLARAK
DLALDFLRQNPEASEREVQSVLVRALEGEGLIFDHPPMVAFGKNAANPHHEPSEVRLEEGAVVLLDLWAKAPGGVYADLT
WMAGKRPPEAAHRAFQAVARARDEAIAFVERAYREGRYPKGFEVDRLARKVLEEEGYGPYIRHRTGHNLGEEVHGSGPHL
DDLETHDLRPLVPGLAFTVEPGVYLEAFGVRTEVDVYLHPTGPEVTTPLQEAITPL

Sequences:

>Translated_376_residues
MELRAVQEVLKEERLDGWLLYSFGGSNPLALEVLGLAHLHLTRRFAYLIPREGAPTLLCHAIEASLFPPLPGNRKTYHTW
RGFLEGLAHLLGGMRRVALEYVPGGQIPYLSRVDGGTLDLLRGLGLELASSWPLLLLFQTWDEERLQSHRRAAAGLARAK
DLALDFLRQNPEASEREVQSVLVRALEGEGLIFDHPPMVAFGKNAANPHHEPSEVRLEEGAVVLLDLWAKAPGGVYADLT
WMAGKRPPEAAHRAFQAVARARDEAIAFVERAYREGRYPKGFEVDRLARKVLEEEGYGPYIRHRTGHNLGEEVHGSGPHL
DDLETHDLRPLVPGLAFTVEPGVYLEAFGVRTEVDVYLHPTGPEVTTPLQEAITPL
>Mature_376_residues
MELRAVQEVLKEERLDGWLLYSFGGSNPLALEVLGLAHLHLTRRFAYLIPREGAPTLLCHAIEASLFPPLPGNRKTYHTW
RGFLEGLAHLLGGMRRVALEYVPGGQIPYLSRVDGGTLDLLRGLGLELASSWPLLLLFQTWDEERLQSHRRAAAGLARAK
DLALDFLRQNPEASEREVQSVLVRALEGEGLIFDHPPMVAFGKNAANPHHEPSEVRLEEGAVVLLDLWAKAPGGVYADLT
WMAGKRPPEAAHRAFQAVARARDEAIAFVERAYREGRYPKGFEVDRLARKVLEEEGYGPYIRHRTGHNLGEEVHGSGPHL
DDLETHDLRPLVPGLAFTVEPGVYLEAFGVRTEVDVYLHPTGPEVTTPLQEAITPL

Specific function: Unknown

COG id: COG0006

COG function: function code E; Xaa-Pro aminopeptidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M24B family [H]

Homologues:

Organism=Escherichia coli, GI1788728, Length=227, Percent_Identity=34.3612334801762, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000587
- InterPro:   IPR000994
- InterPro:   IPR001131 [H]

Pfam domain/function: PF01321 Creatinase_N; PF00557 Peptidase_M24 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 41808; Mature: 41808

Theoretical pI: Translated: 6.09; Mature: 6.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELRAVQEVLKEERLDGWLLYSFGGSNPLALEVLGLAHLHLTRRFAYLIPREGAPTLLCH
CCHHHHHHHHHHHCCCCEEEEEECCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
AIEASLFPPLPGNRKTYHTWRGFLEGLAHLLGGMRRVALEYVPGGQIPYLSRVDGGTLDL
HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHH
LRGLGLELASSWPLLLLFQTWDEERLQSHRRAAAGLARAKDLALDFLRQNPEASEREVQS
HHHCCHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
VLVRALEGEGLIFDHPPMVAFGKNAANPHHEPSEVRLEEGAVVLLDLWAKAPGGVYADLT
HHHHHHCCCCEEEECCCCEEECCCCCCCCCCCCCEEECCCCEEEEEECCCCCCCEEEEEE
WMAGKRPPEAAHRAFQAVARARDEAIAFVERAYREGRYPKGFEVDRLARKVLEEEGYGPY
ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCC
IRHRTGHNLGEEVHGSGPHLDDLETHDLRPLVPGLAFTVEPGVYLEAFGVRTEVDVYLHP
EECCCCCCCCHHHCCCCCCCCCCCCCCCCHHCCCEEEEECCCCEEEEECCEEEEEEEECC
TGPEVTTPLQEAITPL
CCCCCCCCHHHHCCCC
>Mature Secondary Structure
MELRAVQEVLKEERLDGWLLYSFGGSNPLALEVLGLAHLHLTRRFAYLIPREGAPTLLCH
CCHHHHHHHHHHHCCCCEEEEEECCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
AIEASLFPPLPGNRKTYHTWRGFLEGLAHLLGGMRRVALEYVPGGQIPYLSRVDGGTLDL
HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHH
LRGLGLELASSWPLLLLFQTWDEERLQSHRRAAAGLARAKDLALDFLRQNPEASEREVQS
HHHCCHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
VLVRALEGEGLIFDHPPMVAFGKNAANPHHEPSEVRLEEGAVVLLDLWAKAPGGVYADLT
HHHHHHCCCCEEEECCCCEEECCCCCCCCCCCCCEEECCCCEEEEEECCCCCCCEEEEEE
WMAGKRPPEAAHRAFQAVARARDEAIAFVERAYREGRYPKGFEVDRLARKVLEEEGYGPY
ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCC
IRHRTGHNLGEEVHGSGPHLDDLETHDLRPLVPGLAFTVEPGVYLEAFGVRTEVDVYLHP
EECCCCCCCCHHHCCCCCCCCCCCCCCCCHHCCCEEEEECCCCEEEEECCEEEEEEEECC
TGPEVTTPLQEAITPL
CCCCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA