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The map label for this gene is pepF1 [H]

Identifier: 55981501

GI number: 55981501

Start: 1456564

End: 1458276

Strand: Reverse

Name: pepF1 [H]

Synonym: TTHA1532

Alternate gene names: 55981501

Gene position: 1458276-1456564 (Counterclockwise)

Preceding gene: 55981504

Following gene: 55981500

Centisome position: 78.84

GC content: 67.54

Gene sequence:

>1713_bases
ATGGAATGGGACCTCTCCGACCTCTATTCAGGCCCCCAAGACCCGAGGATCCTCCAGGACCTCGAGGCCGCCCTCGCCCT
GGCCCAGGGCCTTGACCCCCAGGGGCTTTTGGACCCGAAAGGGGCCCAGGACCTCTTGGAGCGGTACGAGAAGGCCCTGG
AGCTCGCCTACAAGCCCCTGAACTACGCAAGCCTCTACTTCGCCACCCGCACCCAAGACCCCGAGGCCAAGGCCCTTTTG
GACCGGGTGCGGAGCCGCTTCACCGAGGTCAGAAACCGCCTCGTGCCCCTGGAGGTGGCCCTGAGGAAGCTTCCCGAGGA
GGCCTTCCAGAGGCTCCTCGCCCACCCGGGCCTCGCCGACCTCGGCCACTTCCTGAAAAGGCAAAGGGCCTACGCTCCCC
ACACCCTCTCGGAAAGGGAGGAGGAGCTTCTGAACCTCAAGGCCCTGGTGGGAAGGAGCGCCTGGAGCCAGTTCTACACG
GAGTACACGGGCCGGTTCCGCTTCCGGGTGGGGGAAAGGGAGCTCACGGAGATGGAGGTCCGGGCCCTCCGCCGTGACCC
GGACCCCGAGGTGCGCCGCGAGGCCCACCGGGCGCTTTACGGGAAGCTCCTCGCCGAGGCCCCCACGCTGAGCGCCGTCT
TCAACGCGGTTTACCTGGACTACCTCCAGGACCTCCGCCTTAGGGGCTACCGCCACCCCTTGGAGCCCGTGGCCCTCCGC
GACGAGGTGGAGGTGAGGGAGATTGAGGCGCTCCTGGAGGCCACAAAGGCCCACTACCCCCTGGTGGAGCGCTACTACCG
CTGGAAGGCGGGGAGGCTCGGCCGGGAGAAGACCCCAAGCGAGGACCTCCTCGCCCCCCTGGGGGAGAAGCCCAAGGTGC
CCTTTGCCGAGGCGCGGGCCCTGGTGCTGGAGGCCTTCCGCCGTTTCTCCCCCGAGCTTGCGGAAATCGCCCGGGAGTTC
TTTGAGAAGCGCTGGATAGACGTCTACCCGAGGCCCGGCAAACGGGGCGGGGCCTTCTGCTCTGGGGGGCTTCCCTCCAC
CCACCCCTACATCCTCCTCAACCACACGGACGACCTGGACAGCGCCCACACCCTCGCCCACGAGCTCGGGCACGGGGTGC
ACTTCTACCTCGCCCGCAAGCAGCGCCTCCTCAACTTCGGGGCCTCCACCCCCCTCGCCGAGACCGCCAGCGTCTTTGCC
GAGATCCTCCTGGACGACCTCCTCCTGGAGAGGCTTTCCGGGGAGGAAAAGACCCTCCTCCTCGCGGAGAGGGTGGAGGA
CGCCATAAACACCCTCTTCCGCCAGGTGATGTACACCTTCTTTGAGCAGAGAAGCCTCGAGGCCCGCAAGGAGGCCGCCC
TCTCCCCCGAGGCCTTCCACGCCCTCTGGGACGAGGAGCAGAGGAGGCTCTACGGGGAGGCCGTGGCCTGGACGGAGCTT
GACCGCGCCGCCTGGGCGGGCATCCCCCACTTCGTCCACTACCGCTTCTACACCTACAGCTACGCCCTGGGCTACCTGGT
GGTCCTCGCCCTCTACGGCAAGTACCGGGAGGAGGGGGAGGCCTTCGTGCCCAAGTACCTGCGGATTTTGGAGGCCGGGG
AGAGCGCTAGCCCCAAGGAGATCCTGGCCGAGGCCGGGGTGGAGCTTGGCTCCGAGGCCTTCTTCCGCTACGGCTTCGGC
GTCCTGGAGTCTTGGCTAAAGGCCCTTCCCTAG

Upstream 100 bases:

>100_bases
AGGACGAAGATGGGGTAGTATGGATCTATTCTGTCTAGGACGTGATCTCCAGACTCGTCCACAAAGCAAAGAAGCATTAT
CCGCCATTATACTGGCTCCC

Downstream 100 bases:

>100_bases
GCGAGAATAGGGGGATGGACCTGGTCTTTCGCCCCGAGCGCTACCCCTTCCTCACCCAAGACCTCCCCGGGGTGGGCGGG
GAGATCCGGGTGGAGCCCGA

Product: oligoendopeptidase F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 570; Mature: 570

Protein sequence:

>570_residues
MEWDLSDLYSGPQDPRILQDLEAALALAQGLDPQGLLDPKGAQDLLERYEKALELAYKPLNYASLYFATRTQDPEAKALL
DRVRSRFTEVRNRLVPLEVALRKLPEEAFQRLLAHPGLADLGHFLKRQRAYAPHTLSEREEELLNLKALVGRSAWSQFYT
EYTGRFRFRVGERELTEMEVRALRRDPDPEVRREAHRALYGKLLAEAPTLSAVFNAVYLDYLQDLRLRGYRHPLEPVALR
DEVEVREIEALLEATKAHYPLVERYYRWKAGRLGREKTPSEDLLAPLGEKPKVPFAEARALVLEAFRRFSPELAEIAREF
FEKRWIDVYPRPGKRGGAFCSGGLPSTHPYILLNHTDDLDSAHTLAHELGHGVHFYLARKQRLLNFGASTPLAETASVFA
EILLDDLLLERLSGEEKTLLLAERVEDAINTLFRQVMYTFFEQRSLEARKEAALSPEAFHALWDEEQRRLYGEAVAWTEL
DRAAWAGIPHFVHYRFYTYSYALGYLVVLALYGKYREEGEAFVPKYLRILEAGESASPKEILAEAGVELGSEAFFRYGFG
VLESWLKALP

Sequences:

>Translated_570_residues
MEWDLSDLYSGPQDPRILQDLEAALALAQGLDPQGLLDPKGAQDLLERYEKALELAYKPLNYASLYFATRTQDPEAKALL
DRVRSRFTEVRNRLVPLEVALRKLPEEAFQRLLAHPGLADLGHFLKRQRAYAPHTLSEREEELLNLKALVGRSAWSQFYT
EYTGRFRFRVGERELTEMEVRALRRDPDPEVRREAHRALYGKLLAEAPTLSAVFNAVYLDYLQDLRLRGYRHPLEPVALR
DEVEVREIEALLEATKAHYPLVERYYRWKAGRLGREKTPSEDLLAPLGEKPKVPFAEARALVLEAFRRFSPELAEIAREF
FEKRWIDVYPRPGKRGGAFCSGGLPSTHPYILLNHTDDLDSAHTLAHELGHGVHFYLARKQRLLNFGASTPLAETASVFA
EILLDDLLLERLSGEEKTLLLAERVEDAINTLFRQVMYTFFEQRSLEARKEAALSPEAFHALWDEEQRRLYGEAVAWTEL
DRAAWAGIPHFVHYRFYTYSYALGYLVVLALYGKYREEGEAFVPKYLRILEAGESASPKEILAEAGVELGSEAFFRYGFG
VLESWLKALP
>Mature_570_residues
MEWDLSDLYSGPQDPRILQDLEAALALAQGLDPQGLLDPKGAQDLLERYEKALELAYKPLNYASLYFATRTQDPEAKALL
DRVRSRFTEVRNRLVPLEVALRKLPEEAFQRLLAHPGLADLGHFLKRQRAYAPHTLSEREEELLNLKALVGRSAWSQFYT
EYTGRFRFRVGERELTEMEVRALRRDPDPEVRREAHRALYGKLLAEAPTLSAVFNAVYLDYLQDLRLRGYRHPLEPVALR
DEVEVREIEALLEATKAHYPLVERYYRWKAGRLGREKTPSEDLLAPLGEKPKVPFAEARALVLEAFRRFSPELAEIAREF
FEKRWIDVYPRPGKRGGAFCSGGLPSTHPYILLNHTDDLDSAHTLAHELGHGVHFYLARKQRLLNFGASTPLAETASVFA
EILLDDLLLERLSGEEKTLLLAERVEDAINTLFRQVMYTFFEQRSLEARKEAALSPEAFHALWDEEQRRLYGEAVAWTEL
DRAAWAGIPHFVHYRFYTYSYALGYLVVLALYGKYREEGEAFVPKYLRILEAGESASPKEILAEAGVELGSEAFFRYGFG
VLESWLKALP

Specific function: Hydrolyzes peptides containing between 7 and 17 amino acids with a rather wide specificity [H]

COG id: COG1164

COG function: function code E; Oligoendopeptidase F

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M3B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001567
- InterPro:   IPR004438
- InterPro:   IPR013647 [H]

Pfam domain/function: PF01432 Peptidase_M3; PF08439 Peptidase_M3_N [H]

EC number: NA

Molecular weight: Translated: 65414; Mature: 65414

Theoretical pI: Translated: 5.93; Mature: 5.93

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEWDLSDLYSGPQDPRILQDLEAALALAQGLDPQGLLDPKGAQDLLERYEKALELAYKPL
CCCCHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
NYASLYFATRTQDPEAKALLDRVRSRFTEVRNRLVPLEVALRKLPEEAFQRLLAHPGLAD
CHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHCCCCHHH
LGHFLKRQRAYAPHTLSEREEELLNLKALVGRSAWSQFYTEYTGRFRFRVGERELTEMEV
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH
RALRRDPDPEVRREAHRALYGKLLAEAPTLSAVFNAVYLDYLQDLRLRGYRHPLEPVALR
HHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCC
DEVEVREIEALLEATKAHYPLVERYYRWKAGRLGREKTPSEDLLAPLGEKPKVPFAEARA
CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCHHHHHH
LVLEAFRRFSPELAEIAREFFEKRWIDVYPRPGKRGGAFCSGGLPSTHPYILLNHTDDLD
HHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCH
SAHTLAHELGHGVHFYLARKQRLLNFGASTPLAETASVFAEILLDDLLLERLSGEEKTLL
HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
LAERVEDAINTLFRQVMYTFFEQRSLEARKEAALSPEAFHALWDEEQRRLYGEAVAWTEL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
DRAAWAGIPHFVHYRFYTYSYALGYLVVLALYGKYREEGEAFVPKYLRILEAGESASPKE
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHH
ILAEAGVELGSEAFFRYGFGVLESWLKALP
HHHHHCHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MEWDLSDLYSGPQDPRILQDLEAALALAQGLDPQGLLDPKGAQDLLERYEKALELAYKPL
CCCCHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
NYASLYFATRTQDPEAKALLDRVRSRFTEVRNRLVPLEVALRKLPEEAFQRLLAHPGLAD
CHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHCCCCHHH
LGHFLKRQRAYAPHTLSEREEELLNLKALVGRSAWSQFYTEYTGRFRFRVGERELTEMEV
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH
RALRRDPDPEVRREAHRALYGKLLAEAPTLSAVFNAVYLDYLQDLRLRGYRHPLEPVALR
HHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCC
DEVEVREIEALLEATKAHYPLVERYYRWKAGRLGREKTPSEDLLAPLGEKPKVPFAEARA
CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCHHHHHH
LVLEAFRRFSPELAEIAREFFEKRWIDVYPRPGKRGGAFCSGGLPSTHPYILLNHTDDLD
HHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCH
SAHTLAHELGHGVHFYLARKQRLLNFGASTPLAETASVFAEILLDDLLLERLSGEEKTLL
HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
LAERVEDAINTLFRQVMYTFFEQRSLEARKEAALSPEAFHALWDEEQRRLYGEAVAWTEL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
DRAAWAGIPHFVHYRFYTYSYALGYLVVLALYGKYREEGEAFVPKYLRILEAGESASPKE
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHH
ILAEAGVELGSEAFFRYGFGVLESWLKALP
HHHHHCHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7798200; 9209029 [H]