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The map label for this gene is ycjO [C]

Identifier: 55980655

GI number: 55980655

Start: 649612

End: 650370

Strand: Reverse

Name: ycjO [C]

Synonym: TTHA0686

Alternate gene names: 55980655

Gene position: 650370-649612 (Counterclockwise)

Preceding gene: 55980656

Following gene: 55980654

Centisome position: 35.16

GC content: 68.91

Gene sequence:

>759_bases
ATGGCCCTCTCCTTCGTGGTCACCGGGACCATCTGGCGCTGGCTTTTGCAGCCCCAAGGCGGGGTGAACGTCCTCCCCAC
CCTCTTCGGCCTGCCCCCCCTCTCCTTCCCCTGGCTCGCCACCCGGGAACAGGTCCTGGTCTTTGACTGGAACCGCTTGC
CCTTCTACACCGCCCTCGTGGTGGGGCTCGTCCTCCTCTACGTGGCCTACGCCGCCTATCGCGAGGGGGAGAGGCGGCGG
GCCCTCTGGGGCCTGGCCTCCGCCGGGGTGCTCCTCCTTTGGGCCTTCGCCTTCGGACGGGGGCTGAGGCTCCTCCCCTA
CCCCGAGGTCCACGGGTTCAGCCTGGCCCTGGTGGGGGTGATCCTGGCGGCGGTTTGGCAGATGTCCGGCTACACCATGG
CCCTCTACCTGGCGGGGCTGAGGGGGATCCCCGTGGAGGTCCTCGAGGCCGCCCGGGTGGACGGGGCGAGCGAGTGGCAG
CTCTTCCGCCGGGTCATCTTTCCCATGCTCGCCCCCATCACCCTTTCGGCCATGATCGTCCTGGGGCACATCGCCCTGAA
GATCTTTGACCTCGTCTTCGCCATGGCCGGGCTGGACTACGCCCCCACGGACGTGCCCGCCATCTACATGTACCTCCTCG
CCTTCCGGGGCAACCAGTTCGCCAAGGGGGCCGCCATCGGCATCCTCCTGCTCCTCCTCGTGGCCGTGGTGGTCGTCCCC
TACCTGGCCACCCAGCTCAGGAAGGAGGTGCGGCGGTGA

Upstream 100 bases:

>100_bases
TCTTCATGGCCGGAAGCCTGGGCCTGGGCCTCCTCCTCGCCCTCGCGGTGGACAAGGCCCCCAGGGGGGAAGCTTCTTCC
GCACGGTCTTCCTCTTCCCC

Downstream 100 bases:

>100_bases
TGGGCCGGGCCCTCCTCTACGGCTTCCTCCTCCTCATGGCGGGCTTCTTCCTCCTCCCCGTGTACCTGGTGGTCCTCACC
GCCCTAAAGGAGCCCGCCCG

Product: sugar ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 251

Protein sequence:

>252_residues
MALSFVVTGTIWRWLLQPQGGVNVLPTLFGLPPLSFPWLATREQVLVFDWNRLPFYTALVVGLVLLYVAYAAYREGERRR
ALWGLASAGVLLLWAFAFGRGLRLLPYPEVHGFSLALVGVILAAVWQMSGYTMALYLAGLRGIPVEVLEAARVDGASEWQ
LFRRVIFPMLAPITLSAMIVLGHIALKIFDLVFAMAGLDYAPTDVPAIYMYLLAFRGNQFAKGAAIGILLLLLVAVVVVP
YLATQLRKEVRR

Sequences:

>Translated_252_residues
MALSFVVTGTIWRWLLQPQGGVNVLPTLFGLPPLSFPWLATREQVLVFDWNRLPFYTALVVGLVLLYVAYAAYREGERRR
ALWGLASAGVLLLWAFAFGRGLRLLPYPEVHGFSLALVGVILAAVWQMSGYTMALYLAGLRGIPVEVLEAARVDGASEWQ
LFRRVIFPMLAPITLSAMIVLGHIALKIFDLVFAMAGLDYAPTDVPAIYMYLLAFRGNQFAKGAAIGILLLLLVAVVVVP
YLATQLRKEVRR
>Mature_251_residues
ALSFVVTGTIWRWLLQPQGGVNVLPTLFGLPPLSFPWLATREQVLVFDWNRLPFYTALVVGLVLLYVAYAAYREGERRRA
LWGLASAGVLLLWAFAFGRGLRLLPYPEVHGFSLALVGVILAAVWQMSGYTMALYLAGLRGIPVEVLEAARVDGASEWQL
FRRVIFPMLAPITLSAMIVLGHIALKIFDLVFAMAGLDYAPTDVPAIYMYLLAFRGNQFAKGAAIGILLLLLVAVVVVPY
LATQLRKEVRR

Specific function: Probably part of a binding-protein-dependent transport system PH1214/15/16. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=207, Percent_Identity=30.4347826086957, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 27908; Mature: 27777

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALSFVVTGTIWRWLLQPQGGVNVLPTLFGLPPLSFPWLATREQVLVFDWNRLPFYTALV
CCEEHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCEEEEEECCCCHHHHHHH
VGLVLLYVAYAAYREGERRRALWGLASAGVLLLWAFAFGRGLRLLPYPEVHGFSLALVGV
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCHHHHHHHH
ILAAVWQMSGYTMALYLAGLRGIPVEVLEAARVDGASEWQLFRRVIFPMLAPITLSAMIV
HHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LGHIALKIFDLVFAMAGLDYAPTDVPAIYMYLLAFRGNQFAKGAAIGILLLLLVAVVVVP
HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
YLATQLRKEVRR
HHHHHHHHHHCC
>Mature Secondary Structure 
ALSFVVTGTIWRWLLQPQGGVNVLPTLFGLPPLSFPWLATREQVLVFDWNRLPFYTALV
CEEHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCEEEEEECCCCHHHHHHH
VGLVLLYVAYAAYREGERRRALWGLASAGVLLLWAFAFGRGLRLLPYPEVHGFSLALVGV
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCHHHHHHHH
ILAAVWQMSGYTMALYLAGLRGIPVEVLEAARVDGASEWQLFRRVIFPMLAPITLSAMIV
HHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LGHIALKIFDLVFAMAGLDYAPTDVPAIYMYLLAFRGNQFAKGAAIGILLLLLVAVVVVP
HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
YLATQLRKEVRR
HHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]