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The map label for this gene is recO

Identifier: 54296964

GI number: 54296964

Start: 1116514

End: 1117203

Strand: Direct

Name: recO

Synonym: lpp1005

Alternate gene names: 54296964

Gene position: 1116514-1117203 (Clockwise)

Preceding gene: 54296963

Following gene: 54296967

Centisome position: 31.87

GC content: 42.75

Gene sequence:

>690_bases
ATGACCAGTAAATCGCTGAATGCTTGGGTAATTCATAAGCAATGGTCTGGAGATACCAGTGCCAGACTAAAGCTTTTTAC
TAGGGAACTGGGATTAATTAATTGCTTGTGCAAGGGGGGGCGAACTCCCAAGAAACAGTCATTACTTCAAGCTTTTATTC
CTCTGTGGGTTAGTATTGAAGAGCGTTATGATCAATATTACACACGAAACATTGAAAGCACTTCTTCCAGACTGGATCTT
GAGGGACATTCTCTTTTTTCAGGCCTGTATATCAATGAGTTACTCTATTATACGCTGAGCCCGGATTTCCCTGACTCGGA
TTTATTTGATGCTTACTTGTTCACCTTAAATGGCATAGCATTAGCTAGAGAAAGAGAGGCGATAGAAGCTTTGCTGCGTC
GCTTTGAATGGGCTTTGCTTAAGGCTTGTGGATACACATTTTCATTTCTTCATGAGGCGCGAACGGGAGAGTTAATTGTT
CCCGATTCTCATTACCAATTTGTAGCTGGGGAGGGCTTTATTTTAGGTGGTGATAAAAAAATACCTGGTGAGCACTTACT
TGCTATAGCGGCAGATAATTTAAGCGAGTCCGCTTATTTAAAATCAGCGAAATTCATTATGCGTCAGGCAATCGATCATC
TTTTGGGGGGACGGGAAATCAAGGCCCGGTCCTTGTATGGACCGGCCTGA

Upstream 100 bases:

>100_bases
GACATGGAAAAAATGCTAGATAAAAAGGTTTTTTTACAATGTTGGTGTAAAGTGAAATCAGGCTGGTCAGATGATGAGCG
AATACTGAAGCAATTGGGAT

Downstream 100 bases:

>100_bases
GATAGTGGTATGATCGCCAAGTGCTTCTATGCTATCACATCAGGTCCATGGTTTATTATGCCAGGTGAGGTCTGGATAGA
TTTTCGATTTCTTCCACAGG

Product: DNA repair protein recO

Products: NA

Alternate protein names: Recombination protein O

Number of amino acids: Translated: 229; Mature: 228

Protein sequence:

>229_residues
MTSKSLNAWVIHKQWSGDTSARLKLFTRELGLINCLCKGGRTPKKQSLLQAFIPLWVSIEERYDQYYTRNIESTSSRLDL
EGHSLFSGLYINELLYYTLSPDFPDSDLFDAYLFTLNGIALAREREAIEALLRRFEWALLKACGYTFSFLHEARTGELIV
PDSHYQFVAGEGFILGGDKKIPGEHLLAIAADNLSESAYLKSAKFIMRQAIDHLLGGREIKARSLYGPA

Sequences:

>Translated_229_residues
MTSKSLNAWVIHKQWSGDTSARLKLFTRELGLINCLCKGGRTPKKQSLLQAFIPLWVSIEERYDQYYTRNIESTSSRLDL
EGHSLFSGLYINELLYYTLSPDFPDSDLFDAYLFTLNGIALAREREAIEALLRRFEWALLKACGYTFSFLHEARTGELIV
PDSHYQFVAGEGFILGGDKKIPGEHLLAIAADNLSESAYLKSAKFIMRQAIDHLLGGREIKARSLYGPA
>Mature_228_residues
TSKSLNAWVIHKQWSGDTSARLKLFTRELGLINCLCKGGRTPKKQSLLQAFIPLWVSIEERYDQYYTRNIESTSSRLDLE
GHSLFSGLYINELLYYTLSPDFPDSDLFDAYLFTLNGIALAREREAIEALLRRFEWALLKACGYTFSFLHEARTGELIVP
DSHYQFVAGEGFILGGDKKIPGEHLLAIAADNLSESAYLKSAKFIMRQAIDHLLGGREIKARSLYGPA

Specific function: Involved in DNA repair and recF pathway recombination

COG id: COG1381

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recO family

Homologues:

Organism=Escherichia coli, GI2367140, Length=225, Percent_Identity=35.1111111111111, Blast_Score=110, Evalue=7e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RECO_LEGPA (Q5X6G0)

Other databases:

- EMBL:   CR628336
- RefSeq:   YP_123333.1
- ProteinModelPortal:   Q5X6G0
- STRING:   Q5X6G0
- GeneID:   3116427
- GenomeReviews:   CR628336_GR
- KEGG:   lpp:lpp1005
- LegioList:   lpp1005
- eggNOG:   COG1381
- HOGENOM:   HBG645116
- OMA:   SILQPFQ
- ProtClustDB:   CLSK832519
- BioCyc:   LPNE297246:LPP1005-MONOMER
- HAMAP:   MF_00201
- InterPro:   IPR022572
- InterPro:   IPR016027
- InterPro:   IPR003717
- TIGRFAMs:   TIGR00613

Pfam domain/function: PF02565 RecO; PF11967 RecO_N; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 25907; Mature: 25776

Theoretical pI: Translated: 7.13; Mature: 7.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSKSLNAWVIHKQWSGDTSARLKLFTRELGLINCLCKGGRTPKKQSLLQAFIPLWVSIE
CCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
ERYDQYYTRNIESTSSRLDLEGHSLFSGLYINELLYYTLSPDFPDSDLFDAYLFTLNGIA
HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHHHCCHH
LAREREAIEALLRRFEWALLKACGYTFSFLHEARTGELIVPDSHYQFVAGEGFILGGDKK
HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCEEECCCCEEEEECCEEEECCCCC
IPGEHLLAIAADNLSESAYLKSAKFIMRQAIDHLLGGREIKARSLYGPA
CCHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCC
>Mature Secondary Structure 
TSKSLNAWVIHKQWSGDTSARLKLFTRELGLINCLCKGGRTPKKQSLLQAFIPLWVSIE
CCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
ERYDQYYTRNIESTSSRLDLEGHSLFSGLYINELLYYTLSPDFPDSDLFDAYLFTLNGIA
HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHHHCCHH
LAREREAIEALLRRFEWALLKACGYTFSFLHEARTGELIVPDSHYQFVAGEGFILGGDKK
HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCEEECCCCEEEEECCEEEECCCCC
IPGEHLLAIAADNLSESAYLKSAKFIMRQAIDHLLGGREIKARSLYGPA
CCHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA