Click here to switch to the map view.

The map label for this gene is rnfB [H]

Identifier: 54295706

GI number: 54295706

Start: 3194463

End: 3195077

Strand: Reverse

Name: rnfB [H]

Synonym: lpl2794

Alternate gene names: 54295706

Gene position: 3195077-3194463 (Counterclockwise)

Preceding gene: 54295707

Following gene: 54295705

Centisome position: 95.5

GC content: 42.93

Gene sequence:

>615_bases
ATGGCCTCTGTTAAAGAAATTGATGCCCTATTGCCGCAAACCCAGTGTGGGGAATGCGGATATGCAGGTTGTTTGCCTTA
TGCTGAAGCGCTTGCCCAAGGAGCTGCCCTTATCAATAAATGCCCTCCTGGTGGTGTTGAAACTGTAAATGCTTTGGGAA
AATTACTGCATGTTGATGCATCTCCATATTTGAAAGAAGCAATAGATAATACTCGGCCTCCTTCAGTTGCTGCTATCAAA
GAGGATGAATGCATTGGTTGTACTAAATGCATCAAGGCCTGTCCTGTTGATGCAATTATTGGTAGTAGTAAATTAATGCA
TGCCATTATTACTCATGAGTGCACTGGATGCGGCTTGTGTGTGGATCCTTGCCCTGTTGACTGCATTGAGATGGTTAGTT
TGTCTGCGGCTGGATATGATAAGGATTTGGCCCGCCAGCGTTATAATGCCAAACAAATGCGCCAGTTGCGGGATGAGCAT
GAAAAACAACAAATATACAGAGAAAGAAAGAAACTTTCAGCCCATGCGCAAGATCATACTCAAGACGTACAGGCAAAACA
AAATTATATTCTTGAGGCTTTGGCTCGGGTGAAAGCAAAAAAGACATATGAATAA

Upstream 100 bases:

>100_bases
TCGGTGTTTCTGAAGGCATGGTATTGGCGGCAGGGGATGGACAGGGAATTTATTTATTACAGCCTGATGCTGGAGCACTT
CCTGGCATGAAGGTGAAGTA

Downstream 100 bases:

>100_bases
ACAAAAATCACAAGAAATTTTCAAACGTTTTCAAGAACAAAACCCTCATCCTACAACGGAGTTGCAATATAGTACCCCCT
TTGAGTTATTAATTGCCGTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 203

Protein sequence:

>204_residues
MASVKEIDALLPQTQCGECGYAGCLPYAEALAQGAALINKCPPGGVETVNALGKLLHVDASPYLKEAIDNTRPPSVAAIK
EDECIGCTKCIKACPVDAIIGSSKLMHAIITHECTGCGLCVDPCPVDCIEMVSLSAAGYDKDLARQRYNAKQMRQLRDEH
EKQQIYRERKKLSAHAQDHTQDVQAKQNYILEALARVKAKKTYE

Sequences:

>Translated_204_residues
MASVKEIDALLPQTQCGECGYAGCLPYAEALAQGAALINKCPPGGVETVNALGKLLHVDASPYLKEAIDNTRPPSVAAIK
EDECIGCTKCIKACPVDAIIGSSKLMHAIITHECTGCGLCVDPCPVDCIEMVSLSAAGYDKDLARQRYNAKQMRQLRDEH
EKQQIYRERKKLSAHAQDHTQDVQAKQNYILEALARVKAKKTYE
>Mature_203_residues
ASVKEIDALLPQTQCGECGYAGCLPYAEALAQGAALINKCPPGGVETVNALGKLLHVDASPYLKEAIDNTRPPSVAAIKE
DECIGCTKCIKACPVDAIIGSSKLMHAIITHECTGCGLCVDPCPVDCIEMVSLSAAGYDKDLARQRYNAKQMRQLRDEHE
KQQIYRERKKLSAHAQDHTQDVQAKQNYILEALARVKAKKTYE

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG2878

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfB

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787915, Length=157, Percent_Identity=47.1337579617834, Blast_Score=148, Evalue=3e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010207
- InterPro:   IPR016463
- InterPro:   IPR007202 [H]

Pfam domain/function: PF04060 FeS [H]

EC number: NA

Molecular weight: Translated: 22232; Mature: 22101

Theoretical pI: Translated: 7.01; Mature: 7.01

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

6.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
8.3 %Cys+Met (Translated Protein)
6.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
7.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASVKEIDALLPQTQCGECGYAGCLPYAEALAQGAALINKCPPGGVETVNALGKLLHVDA
CCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC
SPYLKEAIDNTRPPSVAAIKEDECIGCTKCIKACPVDAIIGSSKLMHAIITHECTGCGLC
CHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCC
VDPCPVDCIEMVSLSAAGYDKDLARQRYNAKQMRQLRDEHEKQQIYRERKKLSAHAQDHT
CCCCCHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QDVQAKQNYILEALARVKAKKTYE
HHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ASVKEIDALLPQTQCGECGYAGCLPYAEALAQGAALINKCPPGGVETVNALGKLLHVDA
CCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC
SPYLKEAIDNTRPPSVAAIKEDECIGCTKCIKACPVDAIIGSSKLMHAIITHECTGCGLC
CHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCC
VDPCPVDCIEMVSLSAAGYDKDLARQRYNAKQMRQLRDEHEKQQIYRERKKLSAHAQDHT
CCCCCHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QDVQAKQNYILEALARVKAKKTYE
HHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA