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The map label for this gene is radC [C]

Identifier: 54295324

GI number: 54295324

Start: 2739390

End: 2740073

Strand: Direct

Name: radC [C]

Synonym: lpl2409

Alternate gene names: 54295324

Gene position: 2739390-2740073 (Clockwise)

Preceding gene: 54295320

Following gene: 54295325

Centisome position: 81.88

GC content: 40.35

Gene sequence:

>684_bases
ATGATGGTTGCCCATACAGCGCAACAACTTGACTTGCGCGAAAAATTACTTACTAATGGAGTACATAGCCTCTCTGATAT
CGAATTGTTAGCCGTTTTCATCAGTTCGGGTAACAATAAAAAATCTTGTTTGCAACTAGCCTATGAGCTCACCAAACACT
TGGGAAATTTACGGAATATCCTCAATGCTGATCTGCAAAGCTTTAAATCAATCCATGGATTAGGAGAAGTTCGTTATGCA
CAACTTCAGGCTGCGAAAGAAATATGTCATCGTAGTGATTTCATTGATCTGCAAAAAGAAATCCGGTTATCTAACACTCA
ACAGACTTATGCTTTTTTAAAAAAGCGACTGCGAGACTACAAAAATGAAACTTTTGCCGCACTCTTTCTGGATAACCAAC
ACCGAATCATTGCTTATGAAGAATTATTCTCAGGAACCATCAACACAGCAACAGTCTATCCCAGACCGATTGTAGAACGT
GTATTGCAATTAAATGCTGCTGCTTTAATTCTGGCACATAATCATCCCTCGGGCTTGTCTGATGCAAGCCAGCAAGATCT
AGCCATTACAGAACGCATTCGAGATGCTCTGGACTTGGTAGATGCCCGGTTACTGGATCACATTGTCATTGGGGATAATG
AAGTGTATTCCATTTTTGCTGAGAACAAATGGGCATGTAACTAG

Upstream 100 bases:

>100_bases
TTTTTTATTAATAAAATCTTGCATGGCTCGCCATTTTTGATAAGAATAACTCCGATCAAAGCACAAACTTCGCAATAAAG
GAATATAAAAGGAATACAAA

Downstream 100 bases:

>100_bases
TTCCCGTCCCTATCATTTGAGTTAATGGATTAAAAATGTTCCAACCATTTATTACAGATTTTATAAAAAATCGTTCGTTT
CAATTTATTTTTGTAATGGG

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MMVAHTAQQLDLREKLLTNGVHSLSDIELLAVFISSGNNKKSCLQLAYELTKHLGNLRNILNADLQSFKSIHGLGEVRYA
QLQAAKEICHRSDFIDLQKEIRLSNTQQTYAFLKKRLRDYKNETFAALFLDNQHRIIAYEELFSGTINTATVYPRPIVER
VLQLNAAALILAHNHPSGLSDASQQDLAITERIRDALDLVDARLLDHIVIGDNEVYSIFAENKWACN

Sequences:

>Translated_227_residues
MMVAHTAQQLDLREKLLTNGVHSLSDIELLAVFISSGNNKKSCLQLAYELTKHLGNLRNILNADLQSFKSIHGLGEVRYA
QLQAAKEICHRSDFIDLQKEIRLSNTQQTYAFLKKRLRDYKNETFAALFLDNQHRIIAYEELFSGTINTATVYPRPIVER
VLQLNAAALILAHNHPSGLSDASQQDLAITERIRDALDLVDARLLDHIVIGDNEVYSIFAENKWACN
>Mature_227_residues
MMVAHTAQQLDLREKLLTNGVHSLSDIELLAVFISSGNNKKSCLQLAYELTKHLGNLRNILNADLQSFKSIHGLGEVRYA
QLQAAKEICHRSDFIDLQKEIRLSNTQQTYAFLKKRLRDYKNETFAALFLDNQHRIIAYEELFSGTINTATVYPRPIVER
VLQLNAAALILAHNHPSGLSDASQQDLAITERIRDALDLVDARLLDHIVIGDNEVYSIFAENKWACN

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=218, Percent_Identity=42.2018348623853, Blast_Score=189, Evalue=1e-49,
Organism=Escherichia coli, GI2367100, Length=122, Percent_Identity=45.0819672131148, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI1788997, Length=122, Percent_Identity=45.0819672131148, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI1788312, Length=125, Percent_Identity=44, Blast_Score=110, Evalue=1e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 25700; Mature: 25700

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMVAHTAQQLDLREKLLTNGVHSLSDIELLAVFISSGNNKKSCLQLAYELTKHLGNLRNI
CCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
LNADLQSFKSIHGLGEVRYAQLQAAKEICHRSDFIDLQKEIRLSNTQQTYAFLKKRLRDY
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH
KNETFAALFLDNQHRIIAYEELFSGTINTATVYPRPIVERVLQLNAAALILAHNHPSGLS
CCCEEEEEEECCCCCEEEHHHHHCCCCCCEEECCHHHHHHHHHHCHHEEEEEECCCCCCC
DASQQDLAITERIRDALDLVDARLLDHIVIGDNEVYSIFAENKWACN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEEECCCCCCC
>Mature Secondary Structure
MMVAHTAQQLDLREKLLTNGVHSLSDIELLAVFISSGNNKKSCLQLAYELTKHLGNLRNI
CCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
LNADLQSFKSIHGLGEVRYAQLQAAKEICHRSDFIDLQKEIRLSNTQQTYAFLKKRLRDY
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH
KNETFAALFLDNQHRIIAYEELFSGTINTATVYPRPIVERVLQLNAAALILAHNHPSGLS
CCCEEEEEEECCCCCEEEHHHHHCCCCCCEEECCHHHHHHHHHHCHHEEEEEECCCCCCC
DASQQDLAITERIRDALDLVDARLLDHIVIGDNEVYSIFAENKWACN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA