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The map label for this gene is yrrB [H]

Identifier: 54295320

GI number: 54295320

Start: 2734299

End: 2736032

Strand: Direct

Name: yrrB [H]

Synonym: lpl2405

Alternate gene names: 54295320

Gene position: 2734299-2736032 (Clockwise)

Preceding gene: 54295319

Following gene: 54295324

Centisome position: 81.73

GC content: 38.75

Gene sequence:

>1734_bases
ATGAACAGTGAAGTAGATACTCTTTTTGCACAAGCCTATAAGCTTCAATATGAAGGCCATTTACCTCAAGCCATTAGCTT
ATATGAGCAGATACTTGCCCAATCACCCAAACATACGGAAACTCTGCATTTCCTGGGATTAACCTATGCCCAATTGGGTG
ATATGGAAAATGCCATTTTATATTTTTTGCAAGCCAGAAAAATTAACCCCAATGACGTTGGTATACTCAATAATCTCGCT
AACGCTTATAAAAAGGCAGGTCAATTAGATGAGGCAATTAAATACTACCAGCAAGCCATTGAGATTAAACCAGAGTATGT
CCAGGCTCATAATAATCTGGCAGCAACCTACGCATTACTCAACAATTACCAGAAGGCCTTGCATCATTATGTGATTGCAG
TGAATACAGAACCTGACTTTAGCGCGGCTCACTTTAATTTAGGTTTGTTACTTCTCAAAAACCAACAATTGTCTGCTGCC
AAAACACAATTTAATAATGTGATAGCTCTAAATCCTCAGCACAGAGAAGCTCAATTTTACTTAGGTATTTTGCATTTGGA
AGACAATTTACTCTCAGAAGCAGAACAGGCATTTCAAAAAGTGTTAGAGCAAGATCATGAACATGTCCAATCCCTAATTA
ACTTGGGGGTGATTGCCTTGAAAAGAGAGCAAAACCAATTAGCTGTTGATTATTTTACCAAAGCCTTGGCTTTAGATAAT
GAAGACATTGATGCACGTAATAATTTGGCAGCTACCTTCATGCATCATGATCGCTTTGAAAATGCGCTCATGCATTACGA
TGTTTTACTGAAAAAAGAACCCGATAATCTGGAGTATTTATACAATTCCGGAGTCGCTCAAATGGCATTGGGCCATCTCA
ATGAAGCCACCCTTTTGTTTGATCAGATTTTAACATTACAAAGTGATCACACTCCATCCTTGAATAATCTGGCCGCTATT
TATTTAAAAATGGACATGCGAGAAACCGCGCGCGAATATCTTGAGCGCGCTCTGGCAATCAACCCCGATGATGTGGTCAG
CAGGCATATGCTGAATGCCATTACTGGAGCAACGAGCGTTGATACCACAGAAAAATATGCCCAAAATTTATTTAATAATT
ATGCCTTGTATTACGACCAACACATGCAAGGCGAATTACACTATAAGATTCCGCATCACATTGGCCGCCTCATCCACCAA
CTTCAACTTTTGCAAACCAGTCATTCTTTGGACTTAGGCTGTGGTACTGGATTAACAGGTATTGTGCTTCGTGAAATAAG
CAAACATTTAACCGGAGTAGATATAGCAGAAAAAATGATAGCTCGAGCAAAGGAAAAAAACATCTATGATCTTCTGGTAT
GCTCGGAATTAATCGATTTTTTAAGAAAAGATAAAAACGATTACGATTTAGCGGTCGCTGCAGACGTCCTACCCTATTTT
GGTAATCTGGATGATATTTTTAATTCCATCAATCAACATCTGAAGCAAGAAGGGTATTTTATTTTCACTACCGAAATCAG
CACAACAACTCCGTGGAAACTGGAAAGCAGCGCTCGATTTAGCCATCAACCCGAATACATAGAGAGCTTAATCAATAAAT
ACCAATTTCATCTTATCAAACAAGAGAAAATACCAGGCCGAACACAAAATAAACAAGTGCTGGAAGTCATGTTGTATTGT
GTTAAGAAGTCAGCATCTCGTTTTGTTGCCAACAGAACTTACGAAAACCCCTAA

Upstream 100 bases:

>100_bases
TATCAATGCACAGCCGCTGAATTACCTGCTAAAATTAAAAATAGGATTAGCCATCGCGCAAAAGCTTTAAACCAATTACG
CGCCCTTCTTCCAGATTAAT

Downstream 100 bases:

>100_bases
TCACTTTGTTAAAAAAACAACCGTTCACAGGATATGTAATTAGGGAAGGACAACTCAAATAAATAGGATTATAAACAGAA
AAAACTGCATTCCCAATGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 577; Mature: 577

Protein sequence:

>577_residues
MNSEVDTLFAQAYKLQYEGHLPQAISLYEQILAQSPKHTETLHFLGLTYAQLGDMENAILYFLQARKINPNDVGILNNLA
NAYKKAGQLDEAIKYYQQAIEIKPEYVQAHNNLAATYALLNNYQKALHHYVIAVNTEPDFSAAHFNLGLLLLKNQQLSAA
KTQFNNVIALNPQHREAQFYLGILHLEDNLLSEAEQAFQKVLEQDHEHVQSLINLGVIALKREQNQLAVDYFTKALALDN
EDIDARNNLAATFMHHDRFENALMHYDVLLKKEPDNLEYLYNSGVAQMALGHLNEATLLFDQILTLQSDHTPSLNNLAAI
YLKMDMRETAREYLERALAINPDDVVSRHMLNAITGATSVDTTEKYAQNLFNNYALYYDQHMQGELHYKIPHHIGRLIHQ
LQLLQTSHSLDLGCGTGLTGIVLREISKHLTGVDIAEKMIARAKEKNIYDLLVCSELIDFLRKDKNDYDLAVAADVLPYF
GNLDDIFNSINQHLKQEGYFIFTTEISTTTPWKLESSARFSHQPEYIESLINKYQFHLIKQEKIPGRTQNKQVLEVMLYC
VKKSASRFVANRTYENP

Sequences:

>Translated_577_residues
MNSEVDTLFAQAYKLQYEGHLPQAISLYEQILAQSPKHTETLHFLGLTYAQLGDMENAILYFLQARKINPNDVGILNNLA
NAYKKAGQLDEAIKYYQQAIEIKPEYVQAHNNLAATYALLNNYQKALHHYVIAVNTEPDFSAAHFNLGLLLLKNQQLSAA
KTQFNNVIALNPQHREAQFYLGILHLEDNLLSEAEQAFQKVLEQDHEHVQSLINLGVIALKREQNQLAVDYFTKALALDN
EDIDARNNLAATFMHHDRFENALMHYDVLLKKEPDNLEYLYNSGVAQMALGHLNEATLLFDQILTLQSDHTPSLNNLAAI
YLKMDMRETAREYLERALAINPDDVVSRHMLNAITGATSVDTTEKYAQNLFNNYALYYDQHMQGELHYKIPHHIGRLIHQ
LQLLQTSHSLDLGCGTGLTGIVLREISKHLTGVDIAEKMIARAKEKNIYDLLVCSELIDFLRKDKNDYDLAVAADVLPYF
GNLDDIFNSINQHLKQEGYFIFTTEISTTTPWKLESSARFSHQPEYIESLINKYQFHLIKQEKIPGRTQNKQVLEVMLYC
VKKSASRFVANRTYENP
>Mature_577_residues
MNSEVDTLFAQAYKLQYEGHLPQAISLYEQILAQSPKHTETLHFLGLTYAQLGDMENAILYFLQARKINPNDVGILNNLA
NAYKKAGQLDEAIKYYQQAIEIKPEYVQAHNNLAATYALLNNYQKALHHYVIAVNTEPDFSAAHFNLGLLLLKNQQLSAA
KTQFNNVIALNPQHREAQFYLGILHLEDNLLSEAEQAFQKVLEQDHEHVQSLINLGVIALKREQNQLAVDYFTKALALDN
EDIDARNNLAATFMHHDRFENALMHYDVLLKKEPDNLEYLYNSGVAQMALGHLNEATLLFDQILTLQSDHTPSLNNLAAI
YLKMDMRETAREYLERALAINPDDVVSRHMLNAITGATSVDTTEKYAQNLFNNYALYYDQHMQGELHYKIPHHIGRLIHQ
LQLLQTSHSLDLGCGTGLTGIVLREISKHLTGVDIAEKMIARAKEKNIYDLLVCSELIDFLRKDKNDYDLAVAADVLPYF
GNLDDIFNSINQHLKQEGYFIFTTEISTTTPWKLESSARFSHQPEYIESLINKYQFHLIKQEKIPGRTQNKQVLEVMLYC
VKKSASRFVANRTYENP

Specific function: Could be an interacting mediator in the complex formation among RNA sulfuration components, RNA processing components, and aminoacyl-tRNA synthetases [H]

COG id: COG4976

COG function: function code R; Predicted methyltransferase (contains TPR repeat)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 6 TPR repeats [H]

Homologues:

Organism=Homo sapiens, GI32307150, Length=379, Percent_Identity=25.3298153034301, Blast_Score=104, Evalue=2e-22,
Organism=Homo sapiens, GI32307148, Length=379, Percent_Identity=25.3298153034301, Blast_Score=104, Evalue=3e-22,
Organism=Homo sapiens, GI224809432, Length=319, Percent_Identity=25.3918495297806, Blast_Score=90, Evalue=5e-18,
Organism=Homo sapiens, GI301336134, Length=331, Percent_Identity=23.8670694864048, Blast_Score=80, Evalue=4e-15,
Organism=Homo sapiens, GI83415184, Length=331, Percent_Identity=23.8670694864048, Blast_Score=80, Evalue=5e-15,
Organism=Homo sapiens, GI118766330, Length=251, Percent_Identity=25.8964143426295, Blast_Score=77, Evalue=7e-14,
Organism=Homo sapiens, GI118766328, Length=251, Percent_Identity=25.8964143426295, Blast_Score=76, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI115532692, Length=363, Percent_Identity=25.068870523416, Blast_Score=101, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI115532690, Length=363, Percent_Identity=25.068870523416, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI25147174, Length=270, Percent_Identity=23.7037037037037, Blast_Score=72, Evalue=5e-13,
Organism=Saccharomyces cerevisiae, GI6319387, Length=151, Percent_Identity=30.4635761589404, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI17647755, Length=314, Percent_Identity=27.0700636942675, Blast_Score=102, Evalue=6e-22,
Organism=Drosophila melanogaster, GI24585827, Length=314, Percent_Identity=27.0700636942675, Blast_Score=102, Evalue=6e-22,
Organism=Drosophila melanogaster, GI24585829, Length=314, Percent_Identity=27.0700636942675, Blast_Score=102, Evalue=6e-22,
Organism=Drosophila melanogaster, GI24656717, Length=293, Percent_Identity=27.9863481228669, Blast_Score=80, Evalue=6e-15,
Organism=Drosophila melanogaster, GI18110006, Length=293, Percent_Identity=27.9863481228669, Blast_Score=80, Evalue=6e-15,
Organism=Drosophila melanogaster, GI24647123, Length=267, Percent_Identity=22.8464419475655, Blast_Score=70, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001440
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF00515 TPR_1 [H]

EC number: NA

Molecular weight: Translated: 65985; Mature: 65985

Theoretical pI: Translated: 6.09; Mature: 6.09

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSEVDTLFAQAYKLQYEGHLPQAISLYEQILAQSPKHTETLHFLGLTYAQLGDMENAIL
CCCHHHHHHHHHHHHEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHH
YFLQARKINPNDVGILNNLANAYKKAGQLDEAIKYYQQAIEIKPEYVQAHNNLAATYALL
HHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHH
NNYQKALHHYVIAVNTEPDFSAAHFNLGLLLLKNQQLSAAKTQFNNVIALNPQHREAQFY
HHHHHHHHEEEEEEECCCCCCCHHCCEEEEEEECCCHHHHHHHHCCEEEECCCCCCCEEE
LGILHLEDNLLSEAEQAFQKVLEQDHEHVQSLINLGVIALKREQNQLAVDYFTKALALDN
EEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHCCC
EDIDARNNLAATFMHHDRFENALMHYDVLLKKEPDNLEYLYNSGVAQMALGHLNEATLLF
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHCCHHHHHHHCCCHHHHHH
DQILTLQSDHTPSLNNLAAIYLKMDMRETAREYLERALAINPDDVVSRHMLNAITGATSV
HHHHHHCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC
DTTEKYAQNLFNNYALYYDQHMQGELHYKIPHHIGRLIHQLQLLQTSHSLDLGCGTGLTG
CHHHHHHHHHHHCEEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
IVLREISKHLTGVDIAEKMIARAKEKNIYDLLVCSELIDFLRKDKNDYDLAVAADVLPYF
HHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHC
GNLDDIFNSINQHLKQEGYFIFTTEISTTTPWKLESSARFSHQPEYIESLINKYQFHLIK
CCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHH
QEKIPGRTQNKQVLEVMLYCVKKSASRFVANRTYENP
HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MNSEVDTLFAQAYKLQYEGHLPQAISLYEQILAQSPKHTETLHFLGLTYAQLGDMENAIL
CCCHHHHHHHHHHHHEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHH
YFLQARKINPNDVGILNNLANAYKKAGQLDEAIKYYQQAIEIKPEYVQAHNNLAATYALL
HHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHH
NNYQKALHHYVIAVNTEPDFSAAHFNLGLLLLKNQQLSAAKTQFNNVIALNPQHREAQFY
HHHHHHHHEEEEEEECCCCCCCHHCCEEEEEEECCCHHHHHHHHCCEEEECCCCCCCEEE
LGILHLEDNLLSEAEQAFQKVLEQDHEHVQSLINLGVIALKREQNQLAVDYFTKALALDN
EEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHCCC
EDIDARNNLAATFMHHDRFENALMHYDVLLKKEPDNLEYLYNSGVAQMALGHLNEATLLF
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHCCHHHHHHHCCCHHHHHH
DQILTLQSDHTPSLNNLAAIYLKMDMRETAREYLERALAINPDDVVSRHMLNAITGATSV
HHHHHHCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC
DTTEKYAQNLFNNYALYYDQHMQGELHYKIPHHIGRLIHQLQLLQTSHSLDLGCGTGLTG
CHHHHHHHHHHHCEEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
IVLREISKHLTGVDIAEKMIARAKEKNIYDLLVCSELIDFLRKDKNDYDLAVAADVLPYF
HHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHC
GNLDDIFNSINQHLKQEGYFIFTTEISTTTPWKLESSARFSHQPEYIESLINKYQFHLIK
CCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHH
QEKIPGRTQNKQVLEVMLYCVKKSASRFVANRTYENP
HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]