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The map label for this gene is secB

Identifier: 54295147

GI number: 54295147

Start: 2543795

End: 2544283

Strand: Direct

Name: secB

Synonym: lpl2227

Alternate gene names: 54295147

Gene position: 2543795-2544283 (Clockwise)

Preceding gene: 54295146

Following gene: 54295148

Centisome position: 76.03

GC content: 40.29

Gene sequence:

>489_bases
ATGACTGAACAACTGAATACCAATCAGCAAAATGATGAAGCTCAATTCATGATTCAACGAATCTATATCAAAGATTTATC
CTATGAAACACCAAATACACCTGCTGTTTTTCAACAACAATGGGAACCAGAGCTCAAACTGGATCTCAATACAACGACTA
CTCAACTGGATAAAAACGTTTATGAAGTGGTTTTAACTGTTACAACCACTGTGATGAATCAAAAAACCACAGCATTTTTG
GTTGAAGTAAAGCAAGCAGGCATCTTTACTATCCAAGGCGCCGCAGCAAGTCAGTTGGATCACTTGCTTCATAGCTTTTG
CCCCAGCATCCTGTTCCCCTATGCTCGTGAAGCAATTACCTCGCAAGTCATTCGTGGCAGCTTCCCCCAATTAGTACTCG
CACCGATTAATTTTGATGCTTTATATATGCAGCAGCTGGAAGAAAAACAAAAAGCAACTGGAGCTAAAGACGAGACTGTT
TCTCACTAA

Upstream 100 bases:

>100_bases
AATTTTCATTAATGGCCAGGCAATTGGTGGCTGCGATGATTTATATGCACTGGAAGCCCAGGGAACATTAAATGAACTTT
TAAAAAAATAGGAATAAAAC

Downstream 100 bases:

>100_bases
GATGAATAAAAAAACCATTGCCATGTTAGGTGCCGGCTCCTGGGGCACTGCTGTCGCAATTCATTTAGCTAAAATAGGGC
ATAAAACGCTGCTGTGGAGT

Product: preprotein translocase subunit SecB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 162; Mature: 161

Protein sequence:

>162_residues
MTEQLNTNQQNDEAQFMIQRIYIKDLSYETPNTPAVFQQQWEPELKLDLNTTTTQLDKNVYEVVLTVTTTVMNQKTTAFL
VEVKQAGIFTIQGAAASQLDHLLHSFCPSILFPYAREAITSQVIRGSFPQLVLAPINFDALYMQQLEEKQKATGAKDETV
SH

Sequences:

>Translated_162_residues
MTEQLNTNQQNDEAQFMIQRIYIKDLSYETPNTPAVFQQQWEPELKLDLNTTTTQLDKNVYEVVLTVTTTVMNQKTTAFL
VEVKQAGIFTIQGAAASQLDHLLHSFCPSILFPYAREAITSQVIRGSFPQLVLAPINFDALYMQQLEEKQKATGAKDETV
SH
>Mature_161_residues
TEQLNTNQQNDEAQFMIQRIYIKDLSYETPNTPAVFQQQWEPELKLDLNTTTTQLDKNVYEVVLTVTTTVMNQKTTAFLV
EVKQAGIFTIQGAAASQLDHLLHSFCPSILFPYAREAITSQVIRGSFPQLVLAPINFDALYMQQLEEKQKATGAKDETVS
H

Specific function: One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its r

COG id: COG1952

COG function: function code U; Preprotein translocase subunit SecB

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secB family

Homologues:

Organism=Escherichia coli, GI1790038, Length=143, Percent_Identity=58.041958041958, Blast_Score=182, Evalue=9e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SECB_LEGPA (Q5X2Y1)

Other databases:

- EMBL:   CR628336
- RefSeq:   YP_124567.1
- ProteinModelPortal:   Q5X2Y1
- SMR:   Q5X2Y1
- STRING:   Q5X2Y1
- GeneID:   3117697
- GenomeReviews:   CR628336_GR
- KEGG:   lpp:lpp2256
- LegioList:   lpp2256
- eggNOG:   COG1952
- HOGENOM:   HBG294212
- OMA:   GFPPLMI
- ProtClustDB:   PRK05751
- BioCyc:   LPNE297246:LPP2256-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00821
- InterPro:   IPR003708
- Gene3D:   G3DSA:3.10.420.10
- PRINTS:   PR01594
- TIGRFAMs:   TIGR00809

Pfam domain/function: PF02556 SecB; SSF54611 SecB

EC number: NA

Molecular weight: Translated: 18357; Mature: 18226

Theoretical pI: Translated: 4.58; Mature: 4.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEQLNTNQQNDEAQFMIQRIYIKDLSYETPNTPAVFQQQWEPELKLDLNTTTTQLDKNV
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCEEEECCCHHHHHHHHH
YEVVLTVTTTVMNQKTTAFLVEVKQAGIFTIQGAAASQLDHLLHSFCPSILFPYAREAIT
HHHHHHHHHHHHCCCHHHHEEEHHHCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH
SQVIRGSFPQLVLAPINFDALYMQQLEEKQKATGAKDETVSH
HHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TEQLNTNQQNDEAQFMIQRIYIKDLSYETPNTPAVFQQQWEPELKLDLNTTTTQLDKNV
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCEEEECCCHHHHHHHHH
YEVVLTVTTTVMNQKTTAFLVEVKQAGIFTIQGAAASQLDHLLHSFCPSILFPYAREAIT
HHHHHHHHHHHHCCCHHHHEEEHHHCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH
SQVIRGSFPQLVLAPINFDALYMQQLEEKQKATGAKDETVSH
HHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA