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The map label for this gene is nifU [C]

Identifier: 54294632

GI number: 54294632

Start: 1906781

End: 1907164

Strand: Reverse

Name: nifU [C]

Synonym: lpl1709

Alternate gene names: 54294632

Gene position: 1907164-1906781 (Counterclockwise)

Preceding gene: 54294633

Following gene: 54294631

Centisome position: 57.0

GC content: 31.77

Gene sequence:

>384_bases
ATGATGTATAATAAAATTGTACAGGATTATTTTTTTCAGCCACAACATATTGGTAAGCTGGATTTAAATGATCCTTTTGT
AATAGGTGTACAAAGTCAACCGATTAATCAACTGAATACAGTACATTTTTATATAAAATGTGACGGAGATAAACTGATAT
CCAAAGCCAGATTTAAAACGAATGGTAACCCTTATGTTATTGCGGCAATGGAATGGATATGTTGCCAGATTGAAGGTAAG
ACTTTGGAATCACTTCCATTAATAGATTTTCAGATTCTAATTAATGTATTACAGATAACAAATAATCAGTATCCAGTAGC
AGTCCAGGTAGAGGACATATATAAAGAAGCATTGACTTTGATGCGTAAGAAATTTGAGAGGTAA

Upstream 100 bases:

>100_bases
TTCGCTTATCCATAGGACGCTTCACTTCCGAGGTGCAAATAAAGAGGGCAATTGATATAATTTGCACACAAGTGAGTCGG
TTGCACGAATTATCGCCGTT

Downstream 100 bases:

>100_bases
AGCAATGAGTGTAGAAATACAACAAGCGAGCAGTACCAACCCCAACATCACTTTCAGTGAATCGGCAATAAAGCACCTGG
TCTCCTATCTGGAGAAAAAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 127; Mature: 127

Protein sequence:

>127_residues
MMYNKIVQDYFFQPQHIGKLDLNDPFVIGVQSQPINQLNTVHFYIKCDGDKLISKARFKTNGNPYVIAAMEWICCQIEGK
TLESLPLIDFQILINVLQITNNQYPVAVQVEDIYKEALTLMRKKFER

Sequences:

>Translated_127_residues
MMYNKIVQDYFFQPQHIGKLDLNDPFVIGVQSQPINQLNTVHFYIKCDGDKLISKARFKTNGNPYVIAAMEWICCQIEGK
TLESLPLIDFQILINVLQITNNQYPVAVQVEDIYKEALTLMRKKFER
>Mature_127_residues
MMYNKIVQDYFFQPQHIGKLDLNDPFVIGVQSQPINQLNTVHFYIKCDGDKLISKARFKTNGNPYVIAAMEWICCQIEGK
TLESLPLIDFQILINVLQITNNQYPVAVQVEDIYKEALTLMRKKFER

Specific function: May Be Involved In The Formation Or Repair Of [Fe-S] Clusters Present In Iron-Sulfur Proteins (Potential). [C]

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14800; Mature: 14800

Theoretical pI: Translated: 7.33; Mature: 7.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMYNKIVQDYFFQPQHIGKLDLNDPFVIGVQSQPINQLNTVHFYIKCDGDKLISKARFKT
CCHHHHHHHHCCCCCCCCEECCCCCEEEEECCCCCCCCCEEEEEEEECCHHHHHHHEECC
NGNPYVIAAMEWICCQIEGKTLESLPLIDFQILINVLQITNNQYPVAVQVEDIYKEALTL
CCCCEEEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHH
MRKKFER
HHHHHCC
>Mature Secondary Structure
MMYNKIVQDYFFQPQHIGKLDLNDPFVIGVQSQPINQLNTVHFYIKCDGDKLISKARFKT
CCHHHHHHHHCCCCCCCCEECCCCCEEEEECCCCCCCCCEEEEEEEECCHHHHHHHEECC
NGNPYVIAAMEWICCQIEGKTLESLPLIDFQILINVLQITNNQYPVAVQVEDIYKEALTL
CCCCEEEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHH
MRKKFER
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA