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The map label for this gene is yciO [H]

Identifier: 54294522

GI number: 54294522

Start: 1773445

End: 1774065

Strand: Reverse

Name: yciO [H]

Synonym: lpl1598

Alternate gene names: 54294522

Gene position: 1774065-1773445 (Counterclockwise)

Preceding gene: 54294523

Following gene: 54294521

Centisome position: 53.03

GC content: 40.42

Gene sequence:

>621_bases
ATGAGTCAGTTTTTTGCTTTACATCCAGATAATCCTCAAGCACGCTTGTTGAGAAAAGCAGTTTCAATTATAGAAGAAGG
GGGGCTTATCGTTTACCCGACAGATTCTGGCTATGCTTTGGGCTGTAGTTTGGGCAATAAATCAGCCCTGGAGCGTATTC
GCCGCTTACGTCAATTGGATAAGCATCATAATATGACCCTGGTTTGTCGTGACTTATCCCAGTTAGGTACTTATGCAAAG
GTTTCTAATCCAATTTTTAGATTATTGAAGGCTTTTACTCCAGGCTCTTATACCTTTATTCTTAATGCTACACATGAAGT
GCCTCGTTTGATGCTCCACCCAAAACGAAGAACATTGGGGTTAAGAGTACCTGATAACACGATTACTTTGTCTTTATTGG
AGTGTCTGGAAGCCCCTTTAATGAGCACCACTTTAATTTTACCGGGGGCTGAAGCGCCATTAAGCGAGCCCGAAGCAATT
AAAGATTTATTAGGCAACCAAATTGATTTAATAATTGATGGTGGAAATTGTGGCCATGAACCCACTACAGTAGTGGATTT
AACTGGAGATTATCCGATAATTATAAGAGAGGGAAAAGGAGATCCTGAACCCTTTAAGTAA

Upstream 100 bases:

>100_bases
ATAGTGACGCTCAATCTTGTATAAATCTGGGGCGCCAGAGACAATTACCAATAATATGCACGCCTATTTGGCAAGAATGG
AACATGAAACAGGGGACTTT

Downstream 100 bases:

>100_bases
TAGAATACAGTCGCGGTTTTGTTAGTATTTAGTGAAAGAGAATTTTATGTGCTCCTACCAGGCTAGAGCTGACGCCATTG
AATTTTATTTTGTCCAGTTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 205

Protein sequence:

>206_residues
MSQFFALHPDNPQARLLRKAVSIIEEGGLIVYPTDSGYALGCSLGNKSALERIRRLRQLDKHHNMTLVCRDLSQLGTYAK
VSNPIFRLLKAFTPGSYTFILNATHEVPRLMLHPKRRTLGLRVPDNTITLSLLECLEAPLMSTTLILPGAEAPLSEPEAI
KDLLGNQIDLIIDGGNCGHEPTTVVDLTGDYPIIIREGKGDPEPFK

Sequences:

>Translated_206_residues
MSQFFALHPDNPQARLLRKAVSIIEEGGLIVYPTDSGYALGCSLGNKSALERIRRLRQLDKHHNMTLVCRDLSQLGTYAK
VSNPIFRLLKAFTPGSYTFILNATHEVPRLMLHPKRRTLGLRVPDNTITLSLLECLEAPLMSTTLILPGAEAPLSEPEAI
KDLLGNQIDLIIDGGNCGHEPTTVVDLTGDYPIIIREGKGDPEPFK
>Mature_205_residues
SQFFALHPDNPQARLLRKAVSIIEEGGLIVYPTDSGYALGCSLGNKSALERIRRLRQLDKHHNMTLVCRDLSQLGTYAKV
SNPIFRLLKAFTPGSYTFILNATHEVPRLMLHPKRRTLGLRVPDNTITLSLLECLEAPLMSTTLILPGAEAPLSEPEAIK
DLLGNQIDLIIDGGNCGHEPTTVVDLTGDYPIIIREGKGDPEPFK

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI87081864, Length=205, Percent_Identity=60.4878048780488, Blast_Score=263, Evalue=7e-72,
Organism=Drosophila melanogaster, GI78707274, Length=179, Percent_Identity=26.2569832402235, Blast_Score=64, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 22722; Mature: 22590

Theoretical pI: Translated: 7.11; Mature: 7.11

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQFFALHPDNPQARLLRKAVSIIEEGGLIVYPTDSGYALGCSLGNKSALERIRRLRQLD
CCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEECCCCEEEEECCCCHHHHHHHHHHHHHH
KHHNMTLVCRDLSQLGTYAKVSNPIFRLLKAFTPGSYTFILNATHEVPRLMLHPKRRTLG
HHCCEEEEEECHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHCCCCCCEEE
LRVPDNTITLSLLECLEAPLMSTTLILPGAEAPLSEPEAIKDLLGNQIDLIIDGGNCGHE
EECCCCHHHHHHHHHHCCCHHHEEEEECCCCCCCCCHHHHHHHHCCCEEEEEECCCCCCC
PTTVVDLTGDYPIIIREGKGDPEPFK
CCEEEEECCCCEEEEECCCCCCCCCC
>Mature Secondary Structure 
SQFFALHPDNPQARLLRKAVSIIEEGGLIVYPTDSGYALGCSLGNKSALERIRRLRQLD
CCEEEECCCCHHHHHHHHHHHHHHCCCEEEEECCCCEEEEECCCCHHHHHHHHHHHHHH
KHHNMTLVCRDLSQLGTYAKVSNPIFRLLKAFTPGSYTFILNATHEVPRLMLHPKRRTLG
HHCCEEEEEECHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHCCCCCCEEE
LRVPDNTITLSLLECLEAPLMSTTLILPGAEAPLSEPEAIKDLLGNQIDLIIDGGNCGHE
EECCCCHHHHHHHHHHCCCHHHEEEEECCCCCCCCCHHHHHHHHCCCEEEEEECCCCCCC
PTTVVDLTGDYPIIIREGKGDPEPFK
CCEEEEECCCCEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]