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The map label for this gene is trpH [H]

Identifier: 54294523

GI number: 54294523

Start: 1774062

End: 1774901

Strand: Reverse

Name: trpH [H]

Synonym: lpl1599

Alternate gene names: 54294523

Gene position: 1774901-1774062 (Counterclockwise)

Preceding gene: 54294535

Following gene: 54294522

Centisome position: 53.05

GC content: 41.19

Gene sequence:

>840_bases
ATGATCGATCTTCATTGCCATAGTTCTTTTTCAGACGGCGCACTGACTCCAGAAGAATTAATAAAAAGAGCGACTACTTT
ACAAGTTCAATGCCTATCTCTTACAGATCATGATACTGTTGCAGGATATGACGCTTTATATGACGCTGCGATCCATACAA
ACATTAAAATAGTTAAAGGGGTAGAACTCAGTACTCGTTGGAAGAAGTATGACATTCATATACTTGGTTACCAAATTAAT
CACACAGCAGAATTACAAGAGTTAATTGCTCATCAAAATAAAAGTCGAATAGAGCGTGCTGAGAAAATTGGAGAATCCTT
GCATTCGGTTGGTATTGACAATGCTTATGAAAAAGCCTGTCTTTTGGCAGGCCACAAACGGGTGGGTCGACCCCATTTTG
CCCAAGTACTGATTAATGAAGGGAAGGCAAAAGATATGAAGTCGGCTTTTAAAAATTACCTCGGGAGAGGCAAGCGCGCC
TATATACCTACCTTATGGATTAGCATGCACGATGCGGTCAAAGGTATATCTCATTCTGGTGGACAGGCTGTAATTGCTCA
TCCACTTAAATATGGATTGACGCGTTCAAAATTGCGTGAGTTAATCACGGAGTTTAAAGAGGCTGGAGGTGTTGGCATGG
AAGTCGTTTCTGGAGAAATGACAACTGTACAAATTCAAGAAATGGCTGGGATGTGTGAGCGATTTCATTTGCTCGCCTCA
TCAGGATCAGATTACCATAGTGACGCTCAATCTTGTATAAATCTGGGGCGCCAGAGACAATTACCAATAATATGCACGCC
TATTTGGCAAGAATGGAACATGAAACAGGGGACTTTATGA

Upstream 100 bases:

>100_bases
GGATAACGAGCGTTTAGCGACATAAAAGTTATAAAAGCCTTTTATGTCGAACTCACGTTAATTATGCTATACTTCGATTT
TTTTAAATTAGCTGCAATTT

Downstream 100 bases:

>100_bases
GTCAGTTTTTTGCTTTACATCCAGATAATCCTCAAGCACGCTTGTTGAGAAAAGCAGTTTCAATTATAGAAGAAGGGGGG
CTTATCGTTTACCCGACAGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 279

Protein sequence:

>279_residues
MIDLHCHSSFSDGALTPEELIKRATTLQVQCLSLTDHDTVAGYDALYDAAIHTNIKIVKGVELSTRWKKYDIHILGYQIN
HTAELQELIAHQNKSRIERAEKIGESLHSVGIDNAYEKACLLAGHKRVGRPHFAQVLINEGKAKDMKSAFKNYLGRGKRA
YIPTLWISMHDAVKGISHSGGQAVIAHPLKYGLTRSKLRELITEFKEAGGVGMEVVSGEMTTVQIQEMAGMCERFHLLAS
SGSDYHSDAQSCINLGRQRQLPIICTPIWQEWNMKQGTL

Sequences:

>Translated_279_residues
MIDLHCHSSFSDGALTPEELIKRATTLQVQCLSLTDHDTVAGYDALYDAAIHTNIKIVKGVELSTRWKKYDIHILGYQIN
HTAELQELIAHQNKSRIERAEKIGESLHSVGIDNAYEKACLLAGHKRVGRPHFAQVLINEGKAKDMKSAFKNYLGRGKRA
YIPTLWISMHDAVKGISHSGGQAVIAHPLKYGLTRSKLRELITEFKEAGGVGMEVVSGEMTTVQIQEMAGMCERFHLLAS
SGSDYHSDAQSCINLGRQRQLPIICTPIWQEWNMKQGTL
>Mature_279_residues
MIDLHCHSSFSDGALTPEELIKRATTLQVQCLSLTDHDTVAGYDALYDAAIHTNIKIVKGVELSTRWKKYDIHILGYQIN
HTAELQELIAHQNKSRIERAEKIGESLHSVGIDNAYEKACLLAGHKRVGRPHFAQVLINEGKAKDMKSAFKNYLGRGKRA
YIPTLWISMHDAVKGISHSGGQAVIAHPLKYGLTRSKLRELITEFKEAGGVGMEVVSGEMTTVQIQEMAGMCERFHLLAS
SGSDYHSDAQSCINLGRQRQLPIICTPIWQEWNMKQGTL

Specific function: Unknown

COG id: COG0613

COG function: function code R; Predicted metal-dependent phosphoesterases (PHP family)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trpH family [H]

Homologues:

Organism=Escherichia coli, GI1787520, Length=283, Percent_Identity=39.9293286219081, Blast_Score=202, Evalue=1e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004013
- InterPro:   IPR003141
- InterPro:   IPR016195 [H]

Pfam domain/function: PF02811 PHP [H]

EC number: NA

Molecular weight: Translated: 31105; Mature: 31105

Theoretical pI: Translated: 8.17; Mature: 8.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDLHCHSSFSDGALTPEELIKRATTLQVQCLSLTDHDTVAGYDALYDAAIHTNIKIVKG
CEEEEECCCCCCCCCCHHHHHHHHHHEEEEEEEECCCCCCCCHHHHHHHHHHCCEEEEEC
VELSTRWKKYDIHILGYQINHTAELQELIAHQNKSRIERAEKIGESLHSVGIDNAYEKAC
CCCCCCCEEEEEEEEEEEECCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHH
LLAGHKRVGRPHFAQVLINEGKAKDMKSAFKNYLGRGKRAYIPTLWISMHDAVKGISHSG
HHHCHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEECCCCEEEHHHHHHCCCCCC
GQAVIAHPLKYGLTRSKLRELITEFKEAGGVGMEVVSGEMTTVQIQEMAGMCERFHLLAS
CCEEEECHHHHCCCHHHHHHHHHHHHHCCCCCEEEECCCCEEEEHHHHHHHHHHHHHHHC
SGSDYHSDAQSCINLGRQRQLPIICTPIWQEWNMKQGTL
CCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCC
>Mature Secondary Structure
MIDLHCHSSFSDGALTPEELIKRATTLQVQCLSLTDHDTVAGYDALYDAAIHTNIKIVKG
CEEEEECCCCCCCCCCHHHHHHHHHHEEEEEEEECCCCCCCCHHHHHHHHHHCCEEEEEC
VELSTRWKKYDIHILGYQINHTAELQELIAHQNKSRIERAEKIGESLHSVGIDNAYEKAC
CCCCCCCEEEEEEEEEEEECCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHH
LLAGHKRVGRPHFAQVLINEGKAKDMKSAFKNYLGRGKRAYIPTLWISMHDAVKGISHSG
HHHCHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEECCCCEEEHHHHHHCCCCCC
GQAVIAHPLKYGLTRSKLRELITEFKEAGGVGMEVVSGEMTTVQIQEMAGMCERFHLLAS
CCEEEECHHHHCCCHHHHHHHHHHHHHCCCCCEEEECCCCEEEEHHHHHHHHHHHHHHHC
SGSDYHSDAQSCINLGRQRQLPIICTPIWQEWNMKQGTL
CCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]