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The map label for this gene is degT [H]

Identifier: 54294310

GI number: 54294310

Start: 1534619

End: 1535734

Strand: Direct

Name: degT [H]

Synonym: lpl1375

Alternate gene names: 54294310

Gene position: 1534619-1535734 (Clockwise)

Preceding gene: 54294309

Following gene: 54294311

Centisome position: 45.87

GC content: 37.72

Gene sequence:

>1116_bases
ATGCAATTTATCGACTTAAAAACACAATATTCTTTAATTGAGAATGATATTTTAAACAGCATTAAAAGGGTATTAAATCA
TGGCCAATATATTATGGGGCCTGAAATTGCACAACTTGAAAAAGAGTTGGCCGCTTTTGTTGGAGTGAAGCATGCGATTG
TGAATTCAAGTGGTACAGATGCTTTATTAATGGCATTGATGGCTCTGGATATTCAGCCTGGGGATGAAGTAATTACAAGC
CCATTTAGTTTCTTCGCAACAGCAGAAGTGATTAGCCTTTGTCATGCAACACCCGTCTTTGTAGATATAGATCCTTTAAC
TTATAATTTGGATCCTGAGCAATTAGAGAGAGCAATCACTAAGAAAACCAAGGCCATTATGCCAGTTGATTTATATGGGC
AATGCGCAGATTACGATGCGATTAATGCCATTGCAGCTCAATACGGTATTCCTGTTATTGAAGATGCTGCGCAGAGTTTT
GGGGCTACTTATAAAGGCAAATACTCTTGTTCCCTGGCTACTATTGGCTGTACCAGTTTTTTCCCGTCAAAACCTTTAGG
TGGTTATGGTGATTCTGGAGCTTGTTTTACTAATGATGATGTTTTAGCCCAAAAATTAATTGAAATTAGAATTCATGGGC
AAAATGCCCGCTATTGTCATCATCGGGTAGGGATTAATGGTCGAATGGACACTATCCAAGCAGCAATACTACTTCAGAAG
CTGAAAATATTTTCTAATGAAATTCTAATGCGACAAAAAGTAGCAAAACGTTATGATCAAATGCTTTCTGAGTTAGTGAA
AACTCCTTATGTGCATGAATGCAATGCGAGTGTGTATGCTCAGTATACTATTGAGGTTGAGAATAGAGATGTATTTGCGA
AGTCAATGCAAGCCTCAGGTATACCTACAGCTGTTCATTACCCAATTGCTATGCATCAACAGCAGGCACTTGGTTACTTA
AATTACAAACTTGGAGATTTTCCAAACTCTGAAAAAGCAAGTCAACATGTAATTAGCCTGCCTATGCACCCTTATTTACA
AGAAGATGAGCAATTGAAAATAGTTGCAGCAGTTAGAAATGCTTTACTTGTGATGAATGAAGAGGCCATGGTATAA

Upstream 100 bases:

>100_bases
GTTTATTGCAACTTTAGATTTGTATTAAGATTATTCCTTAACTTCATGGTATTGATCTTAGGTATAGCTAAACAATTTAT
ATACTAATTATGAGATTATA

Downstream 100 bases:

>100_bases
ATGACACCTAAATTAATCGTTGCGTTGGATTTTGATAATCAAGATAACGCTTTACAGTTGGTTGAAAAACTTGATCCGAA
TCATTGCGCACTTAAGGTTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 371; Mature: 371

Protein sequence:

>371_residues
MQFIDLKTQYSLIENDILNSIKRVLNHGQYIMGPEIAQLEKELAAFVGVKHAIVNSSGTDALLMALMALDIQPGDEVITS
PFSFFATAEVISLCHATPVFVDIDPLTYNLDPEQLERAITKKTKAIMPVDLYGQCADYDAINAIAAQYGIPVIEDAAQSF
GATYKGKYSCSLATIGCTSFFPSKPLGGYGDSGACFTNDDVLAQKLIEIRIHGQNARYCHHRVGINGRMDTIQAAILLQK
LKIFSNEILMRQKVAKRYDQMLSELVKTPYVHECNASVYAQYTIEVENRDVFAKSMQASGIPTAVHYPIAMHQQQALGYL
NYKLGDFPNSEKASQHVISLPMHPYLQEDEQLKIVAAVRNALLVMNEEAMV

Sequences:

>Translated_371_residues
MQFIDLKTQYSLIENDILNSIKRVLNHGQYIMGPEIAQLEKELAAFVGVKHAIVNSSGTDALLMALMALDIQPGDEVITS
PFSFFATAEVISLCHATPVFVDIDPLTYNLDPEQLERAITKKTKAIMPVDLYGQCADYDAINAIAAQYGIPVIEDAAQSF
GATYKGKYSCSLATIGCTSFFPSKPLGGYGDSGACFTNDDVLAQKLIEIRIHGQNARYCHHRVGINGRMDTIQAAILLQK
LKIFSNEILMRQKVAKRYDQMLSELVKTPYVHECNASVYAQYTIEVENRDVFAKSMQASGIPTAVHYPIAMHQQQALGYL
NYKLGDFPNSEKASQHVISLPMHPYLQEDEQLKIVAAVRNALLVMNEEAMV
>Mature_371_residues
MQFIDLKTQYSLIENDILNSIKRVLNHGQYIMGPEIAQLEKELAAFVGVKHAIVNSSGTDALLMALMALDIQPGDEVITS
PFSFFATAEVISLCHATPVFVDIDPLTYNLDPEQLERAITKKTKAIMPVDLYGQCADYDAINAIAAQYGIPVIEDAAQSF
GATYKGKYSCSLATIGCTSFFPSKPLGGYGDSGACFTNDDVLAQKLIEIRIHGQNARYCHHRVGINGRMDTIQAAILLQK
LKIFSNEILMRQKVAKRYDQMLSELVKTPYVHECNASVYAQYTIEVENRDVFAKSMQASGIPTAVHYPIAMHQQQALGYL
NYKLGDFPNSEKASQHVISLPMHPYLQEDEQLKIVAAVRNALLVMNEEAMV

Specific function: This membrane protein may function as a sensor protein and may transfer the signal of environmental stimuli to the regulatory region of target genes to activate or repress transcription of the genes [H]

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=370, Percent_Identity=33.2432432432432, Blast_Score=155, Evalue=5e-39,
Organism=Escherichia coli, GI2367285, Length=340, Percent_Identity=30, Blast_Score=139, Evalue=4e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 41122; Mature: 41122

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQFIDLKTQYSLIENDILNSIKRVLNHGQYIMGPEIAQLEKELAAFVGVKHAIVNSSGTD
CCEEECHHHHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCHH
ALLMALMALDIQPGDEVITSPFSFFATAEVISLCHATPVFVDIDPLTYNLDPEQLERAIT
HHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHCCCCEEEEECCCEECCCHHHHHHHHH
KKTKAIMPVDLYGQCADYDAINAIAAQYGIPVIEDAAQSFGATYKGKYSCSLATIGCTSF
HHHHCCCCCHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCEEEEEEEEEHHCC
FPSKPLGGYGDSGACFTNDDVLAQKLIEIRIHGQNARYCHHRVGINGRMDTIQAAILLQK
CCCCCCCCCCCCCCEECCHHHHHHHHHEEEEECCCCCCHHHCCCCCCCHHHHHHHHHHHH
LKIFSNEILMRQKVAKRYDQMLSELVKTPYVHECNASVYAQYTIEVENRDVFAKSMQASG
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCEEEEEEEEEECCCHHHHHHHHCCC
IPTAVHYPIAMHQQQALGYLNYKLGDFPNSEKASQHVISLPMHPYLQEDEQLKIVAAVRN
CCCEEECCHHHHHHHHHHHHCCCCCCCCCCCHHHHHEEECCCCCCCCCCCHHHHHHHHHH
ALLVMNEEAMV
HHEEECCCCCC
>Mature Secondary Structure
MQFIDLKTQYSLIENDILNSIKRVLNHGQYIMGPEIAQLEKELAAFVGVKHAIVNSSGTD
CCEEECHHHHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCHH
ALLMALMALDIQPGDEVITSPFSFFATAEVISLCHATPVFVDIDPLTYNLDPEQLERAIT
HHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHCCCCEEEEECCCEECCCHHHHHHHHH
KKTKAIMPVDLYGQCADYDAINAIAAQYGIPVIEDAAQSFGATYKGKYSCSLATIGCTSF
HHHHCCCCCHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCEEEEEEEEEHHCC
FPSKPLGGYGDSGACFTNDDVLAQKLIEIRIHGQNARYCHHRVGINGRMDTIQAAILLQK
CCCCCCCCCCCCCCEECCHHHHHHHHHEEEEECCCCCCHHHCCCCCCCHHHHHHHHHHHH
LKIFSNEILMRQKVAKRYDQMLSELVKTPYVHECNASVYAQYTIEVENRDVFAKSMQASG
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCEEEEEEEEEECCCHHHHHHHHCCC
IPTAVHYPIAMHQQQALGYLNYKLGDFPNSEKASQHVISLPMHPYLQEDEQLKIVAAVRN
CCCEEECCHHHHHHHHHHHHCCCCCCCCCCCHHHHHEEECCCCCCCCCCCHHHHHHHHHH
ALLVMNEEAMV
HHEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2104607 [H]