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The map label for this gene is yciR [C]

Identifier: 54293866

GI number: 54293866

Start: 1034198

End: 1036513

Strand: Direct

Name: yciR [C]

Synonym: lpl0922

Alternate gene names: 54293866

Gene position: 1034198-1036513 (Clockwise)

Preceding gene: 54293861

Following gene: 54293867

Centisome position: 30.91

GC content: 36.96

Gene sequence:

>2316_bases
ATGCGTAGGCAAGAAATCAATTATGAAAAAGTTGCCAAGGCCGCAGAAAAAATAAAAAAAAGAGGCATAGAGCCGTCCGT
TAATGAAATTCGTGACGAACTTGGTTTAGTTGGGAACCATCCGCAATTATCAATTTTGCTGGAGGAGTGGTATCACAATC
AACCTGAATTTAAACGAAAAAGTCACACACCTTTGACTGAGAATATTAATTTAAATACCGATGAAATTCGCGAAAAAAAT
GTAGAGCTTGAAAAATCAATTTCGCTGTTACGGGCAACACTCGAATCCACCGCAGATGGTATTATGATGGTTAATGGCCA
TGGAGCCGTTGTCGATTGGAATCAAAAGTTTGTAGAAATGTGGCGAATTCCTTCTTATATGATGGAGTCGGGAAAAGAAA
GTATCAGTTTTGAATACATACTTGAGCAACTTATTGATCCGCAATCTTTGATTGCTGATGTGCAATATCTTTATCAAAAT
CCAGAGTGGCAAGGTGAATTACCTGAGCTTCATTTCAAAGACGGTCGGATTTATGAGCGTTTTACTCAGCCTCAGCGCGT
GGGCTCACAAATAGTGGGGCGAGTATATAGTTTCCGTGATGTTACTCAAAAGAGGATGGCTCTCGATGAGTTGAGAATAC
GTGAACGTGCTATTGAAGCCAGCACACATGGTGTGGTGATTATTGACGTAACAAAAAATGAAAACAAAGTCATTTATGTC
AATCGAGCTTTCGAAAGAATAACGGGATATGGGGAGCAATATGCTTTAGGGAAGGGTTTGTTTACTTTGCTAGGTTCAAA
TTTGGAGGAGGTAAACCATAAACGTATTGAACTGGCAATTAGGGAAAGCAAAGAAGAAACAATTGAAATGGAAAGTATAA
AACGAAATGGAGAGTTCTATTGGTGTGAAATCAGCGTTGCTCCAGTTAAAGATTCTTTTGGCTATGTAAAACATTATATT
TGCATTTTAAATGATGTAACTCAACGACGTGATATGGAAGATCAACTGTTGCAGCAAGCAACTTATGATTCCCTGACTAA
TTTACCAAACCGTGTCTTACTGATGGATAGAGTGGAGCAGGCCATTCTACAAGCAAGAAAGAACAAAGCAATTTTGGCTT
TTTTATTTTTGGATTTAGATCGGTTTAAACTGACTAATGATACTTTGGGACACAGTATGGGTGATAAATTATTACAAGCC
ATTGCCAATCGATTACTCATTGTTACAGAGGATTTTGATACTGTTGCCAGATTGGGGGGAGATGAGTTTGTGATATTACT
TACAGACATAGATAATATGCTGGAAGCTGAAACAATTGCACAAAATATTTTAAAAATTATAGAAAAACCTATTCAAATAG
ATCAACATAGTTTGAAGATTACAGGTAGTTTGGGAATCAGCTTTTATCCCAGAGATGGTGATGATTACGAATCATTGATG
AAAAGTGCTGATTTGTCTATGTATCATGCGAAAGATACTGGAAGAAACAACTATCGTGTCTACGAACCTGAAATGAATAG
GCGAGTTATTAATCATATGCAATTAGACAATGCGTTAAGAGATGCTTTAAAAAATGATGAATTATTTCTGGTTTATCAAC
CATTGATTGACTTAAAGCAATCCAGAGTAGTCGGATTCGAGGCTTTAATGAGATGGCATAGCAAAATATTGGGACTTGTT
AGCCCGGCGGATTTTATACCCATGGCAGAAGAAAATGGCATGATTTTGGAAATGGGTGAATGGGCAATGAAGCAAGCTTG
CATGCAAGTAAAAGAATGGCATAAAGCTGGTTTTAAAAACTTAAGTATTGCGGTGAATCTTTCTGGACGGCAGTTTCGAC
AAAAAAACTTGCCGGAAGTTGTATCGCGAGTATTAAAAAGCTCTGGTTTGCAATCGAGGTTTTTGGAACTCGAATTAACG
GAAAGCCTGTTGATAGAAGATATTGATCACGTTGTAGATACTATGTATGCATTGAAAGACATGGGAACCAAGTTAGTGAT
TGATGATTTTGGTACAGGCTACTCAAGCTTGTCTTATTTAAAACAATTTCCCGTAGATAAACTGAAAATTGATCGTTCGT
TTATCACTGAAATGGTAAGCAATCAGAATGACGCGGCTATTGCCAAAGCGATTATTAACCTGGGCCACAGTTTAAATCTT
CAGGTTCTTGCGGAGGGTGTTGAAAATGAATTTCAAAGAGACTTTATAACATCTCATGGATGTGACTATGCTCAAGGATA
TTTTTTTAAGGCTCCTGATACTCCAGAAAATATATTAGAATTTTTAAAAAGTTTATCTGAATCGAAAATAAAGTAA

Upstream 100 bases:

>100_bases
ATCAAAATACTGATTAAAAATTATACTTTCGGCGCCTTTTTTGCTAAAGTTCATAGTGTAAATGCCGATATTTTTATAGA
GTCATTCTAGAGAGGGATGC

Downstream 100 bases:

>100_bases
TGACTAATTCATTAAGTGAAGAATTCCTGTTTTCTCTCAAAACTCAAATCCCATCATAAATCTCTCCAGATCGGTATGTT
TTTTGCAAGCAAAGGTTAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 771; Mature: 771

Protein sequence:

>771_residues
MRRQEINYEKVAKAAEKIKKRGIEPSVNEIRDELGLVGNHPQLSILLEEWYHNQPEFKRKSHTPLTENINLNTDEIREKN
VELEKSISLLRATLESTADGIMMVNGHGAVVDWNQKFVEMWRIPSYMMESGKESISFEYILEQLIDPQSLIADVQYLYQN
PEWQGELPELHFKDGRIYERFTQPQRVGSQIVGRVYSFRDVTQKRMALDELRIRERAIEASTHGVVIIDVTKNENKVIYV
NRAFERITGYGEQYALGKGLFTLLGSNLEEVNHKRIELAIRESKEETIEMESIKRNGEFYWCEISVAPVKDSFGYVKHYI
CILNDVTQRRDMEDQLLQQATYDSLTNLPNRVLLMDRVEQAILQARKNKAILAFLFLDLDRFKLTNDTLGHSMGDKLLQA
IANRLLIVTEDFDTVARLGGDEFVILLTDIDNMLEAETIAQNILKIIEKPIQIDQHSLKITGSLGISFYPRDGDDYESLM
KSADLSMYHAKDTGRNNYRVYEPEMNRRVINHMQLDNALRDALKNDELFLVYQPLIDLKQSRVVGFEALMRWHSKILGLV
SPADFIPMAEENGMILEMGEWAMKQACMQVKEWHKAGFKNLSIAVNLSGRQFRQKNLPEVVSRVLKSSGLQSRFLELELT
ESLLIEDIDHVVDTMYALKDMGTKLVIDDFGTGYSSLSYLKQFPVDKLKIDRSFITEMVSNQNDAAIAKAIINLGHSLNL
QVLAEGVENEFQRDFITSHGCDYAQGYFFKAPDTPENILEFLKSLSESKIK

Sequences:

>Translated_771_residues
MRRQEINYEKVAKAAEKIKKRGIEPSVNEIRDELGLVGNHPQLSILLEEWYHNQPEFKRKSHTPLTENINLNTDEIREKN
VELEKSISLLRATLESTADGIMMVNGHGAVVDWNQKFVEMWRIPSYMMESGKESISFEYILEQLIDPQSLIADVQYLYQN
PEWQGELPELHFKDGRIYERFTQPQRVGSQIVGRVYSFRDVTQKRMALDELRIRERAIEASTHGVVIIDVTKNENKVIYV
NRAFERITGYGEQYALGKGLFTLLGSNLEEVNHKRIELAIRESKEETIEMESIKRNGEFYWCEISVAPVKDSFGYVKHYI
CILNDVTQRRDMEDQLLQQATYDSLTNLPNRVLLMDRVEQAILQARKNKAILAFLFLDLDRFKLTNDTLGHSMGDKLLQA
IANRLLIVTEDFDTVARLGGDEFVILLTDIDNMLEAETIAQNILKIIEKPIQIDQHSLKITGSLGISFYPRDGDDYESLM
KSADLSMYHAKDTGRNNYRVYEPEMNRRVINHMQLDNALRDALKNDELFLVYQPLIDLKQSRVVGFEALMRWHSKILGLV
SPADFIPMAEENGMILEMGEWAMKQACMQVKEWHKAGFKNLSIAVNLSGRQFRQKNLPEVVSRVLKSSGLQSRFLELELT
ESLLIEDIDHVVDTMYALKDMGTKLVIDDFGTGYSSLSYLKQFPVDKLKIDRSFITEMVSNQNDAAIAKAIINLGHSLNL
QVLAEGVENEFQRDFITSHGCDYAQGYFFKAPDTPENILEFLKSLSESKIK
>Mature_771_residues
MRRQEINYEKVAKAAEKIKKRGIEPSVNEIRDELGLVGNHPQLSILLEEWYHNQPEFKRKSHTPLTENINLNTDEIREKN
VELEKSISLLRATLESTADGIMMVNGHGAVVDWNQKFVEMWRIPSYMMESGKESISFEYILEQLIDPQSLIADVQYLYQN
PEWQGELPELHFKDGRIYERFTQPQRVGSQIVGRVYSFRDVTQKRMALDELRIRERAIEASTHGVVIIDVTKNENKVIYV
NRAFERITGYGEQYALGKGLFTLLGSNLEEVNHKRIELAIRESKEETIEMESIKRNGEFYWCEISVAPVKDSFGYVKHYI
CILNDVTQRRDMEDQLLQQATYDSLTNLPNRVLLMDRVEQAILQARKNKAILAFLFLDLDRFKLTNDTLGHSMGDKLLQA
IANRLLIVTEDFDTVARLGGDEFVILLTDIDNMLEAETIAQNILKIIEKPIQIDQHSLKITGSLGISFYPRDGDDYESLM
KSADLSMYHAKDTGRNNYRVYEPEMNRRVINHMQLDNALRDALKNDELFLVYQPLIDLKQSRVVGFEALMRWHSKILGLV
SPADFIPMAEENGMILEMGEWAMKQACMQVKEWHKAGFKNLSIAVNLSGRQFRQKNLPEVVSRVLKSSGLQSRFLELELT
ESLLIEDIDHVVDTMYALKDMGTKLVIDDFGTGYSSLSYLKQFPVDKLKIDRSFITEMVSNQNDAAIAKAIINLGHSLNL
QVLAEGVENEFQRDFITSHGCDYAQGYFFKAPDTPENILEFLKSLSESKIK

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=556, Percent_Identity=33.8129496402878, Blast_Score=316, Evalue=3e-87,
Organism=Escherichia coli, GI87081921, Length=457, Percent_Identity=34.1356673960613, Blast_Score=264, Evalue=1e-71,
Organism=Escherichia coli, GI226510982, Length=443, Percent_Identity=28.6681715575621, Blast_Score=185, Evalue=7e-48,
Organism=Escherichia coli, GI1790496, Length=255, Percent_Identity=32.9411764705882, Blast_Score=162, Evalue=9e-41,
Organism=Escherichia coli, GI1788849, Length=462, Percent_Identity=25.7575757575758, Blast_Score=135, Evalue=9e-33,
Organism=Escherichia coli, GI1787055, Length=445, Percent_Identity=24.4943820224719, Blast_Score=135, Evalue=9e-33,
Organism=Escherichia coli, GI87081845, Length=253, Percent_Identity=30.4347826086957, Blast_Score=134, Evalue=3e-32,
Organism=Escherichia coli, GI1788381, Length=541, Percent_Identity=25.1386321626617, Blast_Score=133, Evalue=3e-32,
Organism=Escherichia coli, GI87081743, Length=243, Percent_Identity=30.0411522633745, Blast_Score=129, Evalue=9e-31,
Organism=Escherichia coli, GI1788502, Length=242, Percent_Identity=28.5123966942149, Blast_Score=128, Evalue=2e-30,
Organism=Escherichia coli, GI1786507, Length=268, Percent_Identity=31.3432835820896, Blast_Score=127, Evalue=3e-30,
Organism=Escherichia coli, GI87081980, Length=240, Percent_Identity=31.25, Blast_Score=125, Evalue=8e-30,
Organism=Escherichia coli, GI87082096, Length=426, Percent_Identity=24.6478873239437, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI87081881, Length=180, Percent_Identity=34.4444444444444, Blast_Score=95, Evalue=2e-20,
Organism=Escherichia coli, GI87082007, Length=168, Percent_Identity=33.9285714285714, Blast_Score=88, Evalue=3e-18,
Organism=Escherichia coli, GI87081977, Length=207, Percent_Identity=29.4685990338164, Blast_Score=86, Evalue=6e-18,
Organism=Escherichia coli, GI145693134, Length=198, Percent_Identity=33.3333333333333, Blast_Score=86, Evalue=1e-17,
Organism=Escherichia coli, GI1787802, Length=198, Percent_Identity=29.2929292929293, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1787816, Length=160, Percent_Identity=34.375, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1788956, Length=160, Percent_Identity=36.25, Blast_Score=82, Evalue=2e-16,
Organism=Escherichia coli, GI1786584, Length=194, Percent_Identity=29.3814432989691, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1787410, Length=239, Percent_Identity=27.1966527196653, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1787262, Length=160, Percent_Identity=33.125, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1789650, Length=416, Percent_Identity=20.4326923076923, Blast_Score=66, Evalue=8e-12,
Organism=Escherichia coli, GI87081974, Length=146, Percent_Identity=31.5068493150685, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 88725; Mature: 88725

Theoretical pI: Translated: 5.18; Mature: 5.18

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRQEINYEKVAKAAEKIKKRGIEPSVNEIRDELGLVGNHPQLSILLEEWYHNQPEFKRK
CCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHC
SHTPLTENINLNTDEIREKNVELEKSISLLRATLESTADGIMMVNGHGAVVDWNQKFVEM
CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEECCCCCEEECHHHHHHH
WRIPSYMMESGKESISFEYILEQLIDPQSLIADVQYLYQNPEWQGELPELHFKDGRIYER
HCCHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHH
FTQPQRVGSQIVGRVYSFRDVTQKRMALDELRIRERAIEASTHGVVIIDVTKNENKVIYV
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEE
NRAFERITGYGEQYALGKGLFTLLGSNLEEVNHKRIELAIRESKEETIEMESIKRNGEFY
EHHHHHHHCCCCHHHHHHHHHHHHCCCHHHCCHHHEEHHHHHCHHHHHHHHHHHCCCCEE
WCEISVAPVKDSFGYVKHYICILNDVTQRRDMEDQLLQQATYDSLTNLPNRVLLMDRVEQ
EEEEEEECCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
AILQARKNKAILAFLFLDLDRFKLTNDTLGHSMGDKLLQAIANRLLIVTEDFDTVARLGG
HHHHHHCCCCEEEHEEHHHHHHEECCCHHHHHHHHHHHHHHHCCEEEEECCHHHHHHCCC
DEFVILLTDIDNMLEAETIAQNILKIIEKPIQIDQHSLKITGSLGISFYPRDGDDYESLM
CCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCEEEECCCCCHHHHHH
KSADLSMYHAKDTGRNNYRVYEPEMNRRVINHMQLDNALRDALKNDELFLVYQPLIDLKQ
HHCCCCEEECCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHH
SRVVGFEALMRWHSKILGLVSPADFIPMAEENGMILEMGEWAMKQACMQVKEWHKAGFKN
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCC
LSIAVNLSGRQFRQKNLPEVVSRVLKSSGLQSRFLELELTESLLIEDIDHVVDTMYALKD
EEEEEECCCHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MGTKLVIDDFGTGYSSLSYLKQFPVDKLKIDRSFITEMVSNQNDAAIAKAIINLGHSLNL
CCCEEEEECCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCH
QVLAEGVENEFQRDFITSHGCDYAQGYFFKAPDTPENILEFLKSLSESKIK
HHHHHHHHHHHHHHHHHHCCCCHHCCEEEECCCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRRQEINYEKVAKAAEKIKKRGIEPSVNEIRDELGLVGNHPQLSILLEEWYHNQPEFKRK
CCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHC
SHTPLTENINLNTDEIREKNVELEKSISLLRATLESTADGIMMVNGHGAVVDWNQKFVEM
CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEECCCCCEEECHHHHHHH
WRIPSYMMESGKESISFEYILEQLIDPQSLIADVQYLYQNPEWQGELPELHFKDGRIYER
HCCHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHH
FTQPQRVGSQIVGRVYSFRDVTQKRMALDELRIRERAIEASTHGVVIIDVTKNENKVIYV
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEE
NRAFERITGYGEQYALGKGLFTLLGSNLEEVNHKRIELAIRESKEETIEMESIKRNGEFY
EHHHHHHHCCCCHHHHHHHHHHHHCCCHHHCCHHHEEHHHHHCHHHHHHHHHHHCCCCEE
WCEISVAPVKDSFGYVKHYICILNDVTQRRDMEDQLLQQATYDSLTNLPNRVLLMDRVEQ
EEEEEEECCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
AILQARKNKAILAFLFLDLDRFKLTNDTLGHSMGDKLLQAIANRLLIVTEDFDTVARLGG
HHHHHHCCCCEEEHEEHHHHHHEECCCHHHHHHHHHHHHHHHCCEEEEECCHHHHHHCCC
DEFVILLTDIDNMLEAETIAQNILKIIEKPIQIDQHSLKITGSLGISFYPRDGDDYESLM
CCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCEEEECCCCCHHHHHH
KSADLSMYHAKDTGRNNYRVYEPEMNRRVINHMQLDNALRDALKNDELFLVYQPLIDLKQ
HHCCCCEEECCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHH
SRVVGFEALMRWHSKILGLVSPADFIPMAEENGMILEMGEWAMKQACMQVKEWHKAGFKN
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCC
LSIAVNLSGRQFRQKNLPEVVSRVLKSSGLQSRFLELELTESLLIEDIDHVVDTMYALKD
EEEEEECCCHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MGTKLVIDDFGTGYSSLSYLKQFPVDKLKIDRSFITEMVSNQNDAAIAKAIINLGHSLNL
CCCEEEEECCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCH
QVLAEGVENEFQRDFITSHGCDYAQGYFFKAPDTPENILEFLKSLSESKIK
HHHHHHHHHHHHHHHHHHCCCCHHCCEEEECCCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]