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The map label for this gene is 54293799

Identifier: 54293799

GI number: 54293799

Start: 971162

End: 971761

Strand: Reverse

Name: 54293799

Synonym: lpl0855

Alternate gene names: NA

Gene position: 971761-971162 (Counterclockwise)

Preceding gene: 54293800

Following gene: 54293798

Centisome position: 29.05

GC content: 35.0

Gene sequence:

>600_bases
ATGATTAACGAATTAACGGCCAGTTTGAATGTGATTGTCACTCAAACACAAAATAACCTGAAAATTTTGGGAGTAATACT
ACTAATTCCCTGGTCAATATTTTTTATTAGTCATTTTATAAGTAATAAGATTTTGCTTTTTGGCATTATCCCAAGGCATA
TTTTGGGCCTCCCGGGGATACTATTAGCACCTTTACTTCACGCCAATTTTAATCACTTGTTTTTTAACTCTATCCCTTTA
CTGGTTTTAAGTAATTTTATTCTGATTAATGGAGTTAACTATTATTTGATTGTCACAATGATGATAACTATTTTTAGCGG
GACACTGATTTGGTGTTTTGCTAAACGAGGTATACACATTGGCGCCAGCGGTTTAATCACAGGCTACTGGGGATTCCTGG
TGTATAACATTTATCAAACAGGAACCTTGACCACTATTATTCTTGGTCTGCTTAGCCTATATTATTTTGCTGGTATTTTT
CTGGGAATTTTTCCAGGTGAAAAAGGCGTATCCTGGCAAGGCCACTTGTTTGGGCTATTAGCAGGTTTTCTCACGAGCTA
TTTATTAGAAATCTATCCTCAGATTCTCATTTATTATTAA

Upstream 100 bases:

>100_bases
TTGAGCCTTTACTTTTTGTACCGTTTCGTAAAATCACAGTTACACCAGTTATGCCAGATAAAAAATCAAACAAATCAACA
CAAGATGCAACGGTAAAATC

Downstream 100 bases:

>100_bases
TCATTAACTCTTCACAATAGCTGGCCCATGAAACCAGTTTATCATTTCACTTTGAACTTTTTTGTCATAATAAATTCAGT
CTTAAACTGCAATTAAATCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 199

Protein sequence:

>199_residues
MINELTASLNVIVTQTQNNLKILGVILLIPWSIFFISHFISNKILLFGIIPRHILGLPGILLAPLLHANFNHLFFNSIPL
LVLSNFILINGVNYYLIVTMMITIFSGTLIWCFAKRGIHIGASGLITGYWGFLVYNIYQTGTLTTIILGLLSLYYFAGIF
LGIFPGEKGVSWQGHLFGLLAGFLTSYLLEIYPQILIYY

Sequences:

>Translated_199_residues
MINELTASLNVIVTQTQNNLKILGVILLIPWSIFFISHFISNKILLFGIIPRHILGLPGILLAPLLHANFNHLFFNSIPL
LVLSNFILINGVNYYLIVTMMITIFSGTLIWCFAKRGIHIGASGLITGYWGFLVYNIYQTGTLTTIILGLLSLYYFAGIF
LGIFPGEKGVSWQGHLFGLLAGFLTSYLLEIYPQILIYY
>Mature_199_residues
MINELTASLNVIVTQTQNNLKILGVILLIPWSIFFISHFISNKILLFGIIPRHILGLPGILLAPLLHANFNHLFFNSIPL
LVLSNFILINGVNYYLIVTMMITIFSGTLIWCFAKRGIHIGASGLITGYWGFLVYNIYQTGTLTTIILGLLSLYYFAGIF
LGIFPGEKGVSWQGHLFGLLAGFLTSYLLEIYPQILIYY

Specific function: Unknown

COG id: COG0705

COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To M.leprae ML1171 [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022764 [H]

Pfam domain/function: PF01694 Rhomboid [H]

EC number: NA

Molecular weight: Translated: 22319; Mature: 22319

Theoretical pI: Translated: 9.21; Mature: 9.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINELTASLNVIVTQTQNNLKILGVILLIPWSIFFISHFISNKILLFGIIPRHILGLPGI
CCCCHHHCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHCCCHH
LLAPLLHANFNHLFFNSIPLLVLSNFILINGVNYYLIVTMMITIFSGTLIWCFAKRGIHI
HHHHHHHCCCCHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEE
GASGLITGYWGFLVYNIYQTGTLTTIILGLLSLYYFAGIFLGIFPGEKGVSWQGHLFGLL
CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
AGFLTSYLLEIYPQILIYY
HHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MINELTASLNVIVTQTQNNLKILGVILLIPWSIFFISHFISNKILLFGIIPRHILGLPGI
CCCCHHHCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHCCCHH
LLAPLLHANFNHLFFNSIPLLVLSNFILINGVNYYLIVTMMITIFSGTLIWCFAKRGIHI
HHHHHHHCCCCHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEE
GASGLITGYWGFLVYNIYQTGTLTTIILGLLSLYYFAGIFLGIFPGEKGVSWQGHLFGLL
CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
AGFLTSYLLEIYPQILIYY
HHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]