Definition Nocardia farcinica IFM 10152 chromosome, complete genome.
Accession NC_006361
Length 6,021,225

Click here to switch to the map view.

The map label for this gene is 54027639

Identifier: 54027639

GI number: 54027639

Start: 6009763

End: 6010530

Strand: Reverse

Name: 54027639

Synonym: nfa56650

Alternate gene names: NA

Gene position: 6010530-6009763 (Counterclockwise)

Preceding gene: 54027640

Following gene: 54027630

Centisome position: 99.82

GC content: 70.05

Gene sequence:

>768_bases
GTGAGCGTGGATGAATCGGACAGCTGGAGGCTGAGCAGAGCGGTGTCGACCAGCGTCACAGCACTTACCCTCGACGGGTT
GGACAAGCTGCCCGCACACGCCAGGAGGTGTGTGTTCTGGGAGATCGATCCCGCCGTCGCCGCGGACTCCCACGGATTCA
GCGACCCGGTCTTCGAGAAGGAGGCCTGGCTCTCCACGGTCATGCTGGAGTGGGGGTCCTGCGGTCAGGTCGCGCACGTG
GACGGTAAGGCAGCCGGCTGCGCGCTGTACTCGCCGCCGACCGCGGTGCCCCGGGCGACGCTGTTCCCTACCTCCCCGGT
GAGCCCGGACGCGATTCTGTTGACGACCCTGTGCACCGAGCCCGCGCACCGCGACGACGACATCGCCCACCGCCTGCTCC
AAGCCGTCGTCTCGGATCTGGTGCGGCGCGGCGTCCGGGCGCTCGAGGCGTTCGGCATCCGGTCCGGGCCCGCGTCGAAA
CCGTTGTCGGACCGGCTCGCCGGGTCGATGCGGCTGATGGAGCGGATCGGCGGGCCGGTGCGCGGCAAGTCGGCGCCGTC
GGCCGACTGCTCCCCCGAGACCTGCATGATCGAGGCGGATCTACTGGAGGACTTCGGCTTCGAAGTCGTGGCGCCGCACC
ACCGGTTCCCGCGGCTGCGGCTCGAGCTCGACTCCGATCACGGCTGGAAGGAAGATGTCGAACGCGCGCTCGACCAGTTG
CTGGCGGCGGCGTCGCTGACCGTGCCGACCCGCGCCGGAGCACGCTGA

Upstream 100 bases:

>100_bases
GGTGTGCGCTGTTCGCCGGAAAGTCGCCGCGGTCGGGCCTCCTGATCAACAGCACAGCGACGTGGAATGAGGCAGGTTCT
AAGATGATCTGTGATGCGGC

Downstream 100 bases:

>100_bases
CCCAGCGCACGAGAAAGCCCCCGTCGAATCACGGTCGACGGGGGCTCTTTCGGTGGTTCAGGAGCGGTCGGCGGCGGCCA
GTTCCTCGGCGAGCAGCTCG

Product: hypothetical protein

Products: NA

Alternate protein names: GNAT Family Acetyltransferase; Acetyltransferase Family Protein

Number of amino acids: Translated: 255; Mature: 254

Protein sequence:

>255_residues
MSVDESDSWRLSRAVSTSVTALTLDGLDKLPAHARRCVFWEIDPAVAADSHGFSDPVFEKEAWLSTVMLEWGSCGQVAHV
DGKAAGCALYSPPTAVPRATLFPTSPVSPDAILLTTLCTEPAHRDDDIAHRLLQAVVSDLVRRGVRALEAFGIRSGPASK
PLSDRLAGSMRLMERIGGPVRGKSAPSADCSPETCMIEADLLEDFGFEVVAPHHRFPRLRLELDSDHGWKEDVERALDQL
LAAASLTVPTRAGAR

Sequences:

>Translated_255_residues
MSVDESDSWRLSRAVSTSVTALTLDGLDKLPAHARRCVFWEIDPAVAADSHGFSDPVFEKEAWLSTVMLEWGSCGQVAHV
DGKAAGCALYSPPTAVPRATLFPTSPVSPDAILLTTLCTEPAHRDDDIAHRLLQAVVSDLVRRGVRALEAFGIRSGPASK
PLSDRLAGSMRLMERIGGPVRGKSAPSADCSPETCMIEADLLEDFGFEVVAPHHRFPRLRLELDSDHGWKEDVERALDQL
LAAASLTVPTRAGAR
>Mature_254_residues
SVDESDSWRLSRAVSTSVTALTLDGLDKLPAHARRCVFWEIDPAVAADSHGFSDPVFEKEAWLSTVMLEWGSCGQVAHVD
GKAAGCALYSPPTAVPRATLFPTSPVSPDAILLTTLCTEPAHRDDDIAHRLLQAVVSDLVRRGVRALEAFGIRSGPASKP
LSDRLAGSMRLMERIGGPVRGKSAPSADCSPETCMIEADLLEDFGFEVVAPHHRFPRLRLELDSDHGWKEDVERALDQLL
AAASLTVPTRAGAR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27531; Mature: 27400

Theoretical pI: Translated: 5.35; Mature: 5.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVDESDSWRLSRAVSTSVTALTLDGLDKLPAHARRCVFWEIDPAVAADSHGFSDPVFEK
CCCCCCCCHHHHHHHHHHEEEEEECCCHHHHHHHHEEEEEECCCCCCCCCCCCCCCCHHH
EAWLSTVMLEWGSCGQVAHVDGKAAGCALYSPPTAVPRATLFPTSPVSPDAILLTTLCTE
HHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCCCCEECCCCCCCCCCEEHHHHHCC
PAHRDDDIAHRLLQAVVSDLVRRGVRALEAFGIRSGPASKPLSDRLAGSMRLMERIGGPV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
RGKSAPSADCSPETCMIEADLLEDFGFEVVAPHHRFPRLRLELDSDHGWKEDVERALDQL
CCCCCCCCCCCCCEEEEEHHHHHHCCCEEECCCCCCCEEEEEECCCCCCHHHHHHHHHHH
LAAASLTVPTRAGAR
HHHHHCCCCCCCCCC
>Mature Secondary Structure 
SVDESDSWRLSRAVSTSVTALTLDGLDKLPAHARRCVFWEIDPAVAADSHGFSDPVFEK
CCCCCCCHHHHHHHHHHEEEEEECCCHHHHHHHHEEEEEECCCCCCCCCCCCCCCCHHH
EAWLSTVMLEWGSCGQVAHVDGKAAGCALYSPPTAVPRATLFPTSPVSPDAILLTTLCTE
HHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCCCCEECCCCCCCCCCEEHHHHHCC
PAHRDDDIAHRLLQAVVSDLVRRGVRALEAFGIRSGPASKPLSDRLAGSMRLMERIGGPV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
RGKSAPSADCSPETCMIEADLLEDFGFEVVAPHHRFPRLRLELDSDHGWKEDVERALDQL
CCCCCCCCCCCCCEEEEEHHHHHHCCCEEECCCCCCCEEEEEECCCCCCHHHHHHHHHHH
LAAASLTVPTRAGAR
HHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA