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The map label for this gene is fadE47 [H]

Identifier: 54027396

GI number: 54027396

Start: 5738034

End: 5739263

Strand: Reverse

Name: fadE47 [H]

Synonym: nfa54220

Alternate gene names: 54027396

Gene position: 5739263-5738034 (Counterclockwise)

Preceding gene: 54027397

Following gene: 54027395

Centisome position: 95.32

GC content: 69.02

Gene sequence:

>1230_bases
ATGGATTTCAACTGGTCAGCGGCCGACCTGGCCTTTCGGGACGAGGTGCGGGCCTTCCTCGACGAGAAATTGACCCCGGA
GATCCGCCGGGCCGGGCGCCTGATGACCAGCGTCTACCCCGACCACGAGGCCAGCATGGCCTGGCAGCGGATCCTGCACG
AGCGGGGCTGGGCCGCGCCGCACTGGCCGGTCGAGTACGGCGGCTGCGACTGGAGCCTGACCCAGCACTACATCTTCAGC
CGCGAATGCACCCTGGCCGGTGCCCCGGCGCTCTCGCCGATGGGCATCAGGATGGTCGCGCCCGCGATCATCGCCTACGG
CACCCCCGAGCAGAAGGCCTACTACCTGCCGCGCATCCTCACCGGCGAGATCTTCTTCTGCCAGGGCTACTCCGAACCGG
AGGCGGGCTCGGACCTGGCCTCGCTGTCGATGGCCGCCGTCGACGACGGCGAGGACTTCCTCTGCACCGGCAGCAAGATC
TGGACCACCCACGCCACCGAGGCCAACTGGATCTTCTGCCTGGTGCGCACCGCGCGCACCGGCAAGAAGCAGGAGGGCAT
CACCTTCCTGCTCATCGACATGACGAGCCCGGGCATCGAGATCCGCCCGCTGGTGATGACCTCCGGCGAGGAGGTGCAGA
ACCAGGTCTTCTTCGACAACGTGCGCGTGCCCAAGAGCAATGTGCTCGGCACGATCGACGAGGGCTGGACCGTCGCCAAA
TATCTGCTGGTGCACGAACGCGGCGGTGCCGCGGCGCCGATGCTGCAGGTCATGGCGCAGGAACTCGCGCAGTCCGCGGC
CGGCCAGCCCGGTCCGGACGGCGGTGCGCTCATCGACGACCCCGCCTTCGCCGCCCGCTTGGCCGATGTGCGCATCCGGA
CCGAGGTGCTCGAGGTGCTCGAGTACCGGACCATCTCGGCGATGGCGCAGGGCAAGAACCCCGGGCCCGCGTCCTCGATG
CTGAAGATCCTGTCCACCGAACTGAGCCAGCAGCTCACCGAGCTCGTGCTCGAGGCGGCGGGCCCGCAGGGGCGGGTCTA
TCAGCCGCACGCCACCGCGCCGGGCGGCCCCGTCGCGCACTACACCCCGCCCGCCGACGGTTACCGCAGCGGCGCGGAGT
GGCAGGCGGTCGCGCCGCTGCGCTACTTCAACGACCGCGCGGGCTCGATCTACGCGGGCAGCAACGAAATTCAGCGAAAC
ATCCTCGCCAAGGCAGCATTGGGGCTCTGA

Upstream 100 bases:

>100_bases
TAACTGCTGGCGTGTGGCATCAGTTTGATTTCGGCTGGCCGGGGGCTTAGATTGGGCTCGTGTTGGCCGTCGGCCAATAG
GGCTCATGCCGGGAGGACAA

Downstream 100 bases:

>100_bases
TGGACTTCACACTCACCGAGGAGCAGCAGCTCCTGCGCGACACCGTCGCCGGCTTCCTCGCCGCCCGGTACGACCTCGAG
AAGAGCCGCGCCGCGGTGAA

Product: putative acyl-CoA dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 409; Mature: 409

Protein sequence:

>409_residues
MDFNWSAADLAFRDEVRAFLDEKLTPEIRRAGRLMTSVYPDHEASMAWQRILHERGWAAPHWPVEYGGCDWSLTQHYIFS
RECTLAGAPALSPMGIRMVAPAIIAYGTPEQKAYYLPRILTGEIFFCQGYSEPEAGSDLASLSMAAVDDGEDFLCTGSKI
WTTHATEANWIFCLVRTARTGKKQEGITFLLIDMTSPGIEIRPLVMTSGEEVQNQVFFDNVRVPKSNVLGTIDEGWTVAK
YLLVHERGGAAAPMLQVMAQELAQSAAGQPGPDGGALIDDPAFAARLADVRIRTEVLEVLEYRTISAMAQGKNPGPASSM
LKILSTELSQQLTELVLEAAGPQGRVYQPHATAPGGPVAHYTPPADGYRSGAEWQAVAPLRYFNDRAGSIYAGSNEIQRN
ILAKAALGL

Sequences:

>Translated_409_residues
MDFNWSAADLAFRDEVRAFLDEKLTPEIRRAGRLMTSVYPDHEASMAWQRILHERGWAAPHWPVEYGGCDWSLTQHYIFS
RECTLAGAPALSPMGIRMVAPAIIAYGTPEQKAYYLPRILTGEIFFCQGYSEPEAGSDLASLSMAAVDDGEDFLCTGSKI
WTTHATEANWIFCLVRTARTGKKQEGITFLLIDMTSPGIEIRPLVMTSGEEVQNQVFFDNVRVPKSNVLGTIDEGWTVAK
YLLVHERGGAAAPMLQVMAQELAQSAAGQPGPDGGALIDDPAFAARLADVRIRTEVLEVLEYRTISAMAQGKNPGPASSM
LKILSTELSQQLTELVLEAAGPQGRVYQPHATAPGGPVAHYTPPADGYRSGAEWQAVAPLRYFNDRAGSIYAGSNEIQRN
ILAKAALGL
>Mature_409_residues
MDFNWSAADLAFRDEVRAFLDEKLTPEIRRAGRLMTSVYPDHEASMAWQRILHERGWAAPHWPVEYGGCDWSLTQHYIFS
RECTLAGAPALSPMGIRMVAPAIIAYGTPEQKAYYLPRILTGEIFFCQGYSEPEAGSDLASLSMAAVDDGEDFLCTGSKI
WTTHATEANWIFCLVRTARTGKKQEGITFLLIDMTSPGIEIRPLVMTSGEEVQNQVFFDNVRVPKSNVLGTIDEGWTVAK
YLLVHERGGAAAPMLQVMAQELAQSAAGQPGPDGGALIDDPAFAARLADVRIRTEVLEVLEYRTISAMAQGKNPGPASSM
LKILSTELSQQLTELVLEAAGPQGRVYQPHATAPGGPVAHYTPPADGYRSGAEWQAVAPLRYFNDRAGSIYAGSNEIQRN
ILAKAALGL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI4501859, Length=416, Percent_Identity=26.6826923076923, Blast_Score=102, Evalue=7e-22,
Organism=Homo sapiens, GI76496475, Length=321, Percent_Identity=29.2834890965732, Blast_Score=99, Evalue=8e-21,
Organism=Homo sapiens, GI4557235, Length=321, Percent_Identity=29.2834890965732, Blast_Score=99, Evalue=1e-20,
Organism=Homo sapiens, GI4557231, Length=351, Percent_Identity=24.2165242165242, Blast_Score=92, Evalue=9e-19,
Organism=Homo sapiens, GI187960098, Length=351, Percent_Identity=24.2165242165242, Blast_Score=92, Evalue=1e-18,
Organism=Homo sapiens, GI21361497, Length=308, Percent_Identity=26.2987012987013, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI226958412, Length=389, Percent_Identity=23.1362467866324, Blast_Score=84, Evalue=3e-16,
Organism=Homo sapiens, GI4557233, Length=399, Percent_Identity=24.5614035087719, Blast_Score=83, Evalue=4e-16,
Organism=Homo sapiens, GI226958414, Length=338, Percent_Identity=23.9644970414201, Blast_Score=82, Evalue=9e-16,
Organism=Homo sapiens, GI48976061, Length=289, Percent_Identity=24.2214532871972, Blast_Score=73, Evalue=6e-13,
Organism=Homo sapiens, GI211971008, Length=289, Percent_Identity=24.2214532871972, Blast_Score=73, Evalue=6e-13,
Organism=Homo sapiens, GI4503943, Length=231, Percent_Identity=26.8398268398268, Blast_Score=69, Evalue=1e-11,
Organism=Homo sapiens, GI7669494, Length=231, Percent_Identity=26.8398268398268, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI7656849, Length=322, Percent_Identity=23.2919254658385, Blast_Score=67, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17506239, Length=409, Percent_Identity=28.1173594132029, Blast_Score=114, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI17508101, Length=363, Percent_Identity=28.9256198347107, Blast_Score=110, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17570075, Length=416, Percent_Identity=23.0769230769231, Blast_Score=102, Evalue=4e-22,
Organism=Caenorhabditis elegans, GI32563615, Length=243, Percent_Identity=35.3909465020576, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17538396, Length=256, Percent_Identity=27.734375, Blast_Score=100, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17551932, Length=348, Percent_Identity=25.2873563218391, Blast_Score=100, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17569725, Length=421, Percent_Identity=24.2280285035629, Blast_Score=93, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17505929, Length=339, Percent_Identity=24.188790560472, Blast_Score=88, Evalue=7e-18,
Organism=Caenorhabditis elegans, GI17534899, Length=272, Percent_Identity=27.2058823529412, Blast_Score=84, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI71990804, Length=261, Percent_Identity=29.1187739463602, Blast_Score=84, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI71985184, Length=200, Percent_Identity=29, Blast_Score=69, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI71985192, Length=203, Percent_Identity=29.064039408867, Blast_Score=68, Evalue=8e-12,
Organism=Drosophila melanogaster, GI281363737, Length=323, Percent_Identity=27.5541795665635, Blast_Score=103, Evalue=1e-22,
Organism=Drosophila melanogaster, GI24666513, Length=333, Percent_Identity=25.8258258258258, Blast_Score=96, Evalue=5e-20,
Organism=Drosophila melanogaster, GI24646207, Length=403, Percent_Identity=26.0545905707196, Blast_Score=90, Evalue=3e-18,
Organism=Drosophila melanogaster, GI21356377, Length=405, Percent_Identity=24.6913580246914, Blast_Score=87, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24660351, Length=245, Percent_Identity=28.1632653061224, Blast_Score=81, Evalue=1e-15,
Organism=Drosophila melanogaster, GI21355753, Length=188, Percent_Identity=29.7872340425532, Blast_Score=80, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 44606; Mature: 44606

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFNWSAADLAFRDEVRAFLDEKLTPEIRRAGRLMTSVYPDHEASMAWQRILHERGWAAP
CCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCC
HWPVEYGGCDWSLTQHYIFSRECTLAGAPALSPMGIRMVAPAIIAYGTPEQKAYYLPRIL
CCCCEECCCCCHHHHHEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEECCEEE
TGEIFFCQGYSEPEAGSDLASLSMAAVDDGEDFLCTGSKIWTTHATEANWIFCLVRTART
ECCEEEEECCCCCCCCCHHHHHEEEEECCCCCEEEECCEEEEECCCCCCEEEEEEEHHCC
GKKQEGITFLLIDMTSPGIEIRPLVMTSGEEVQNQVFFDNVRVPKSNVLGTIDEGWTVAK
CCCCCCCEEEEEEECCCCCEEEEEEEECCHHHHHHEEECCCCCCHHHCCCCCCCCHHEEE
YLLVHERGGAAAPMLQVMAQELAQSAAGQPGPDGGALIDDPAFAARLADVRIRTEVLEVL
EEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHH
EYRTISAMAQGKNPGPASSMLKILSTELSQQLTELVLEAAGPQGRVYQPHATAPGGPVAH
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCC
YTPPADGYRSGAEWQAVAPLRYFNDRAGSIYAGSNEIQRNILAKAALGL
CCCCCCCCCCCCCCEEECCHHHHCCCCCEEEECCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDFNWSAADLAFRDEVRAFLDEKLTPEIRRAGRLMTSVYPDHEASMAWQRILHERGWAAP
CCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCC
HWPVEYGGCDWSLTQHYIFSRECTLAGAPALSPMGIRMVAPAIIAYGTPEQKAYYLPRIL
CCCCEECCCCCHHHHHEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEECCEEE
TGEIFFCQGYSEPEAGSDLASLSMAAVDDGEDFLCTGSKIWTTHATEANWIFCLVRTART
ECCEEEEECCCCCCCCCHHHHHEEEEECCCCCEEEECCEEEEECCCCCCEEEEEEEHHCC
GKKQEGITFLLIDMTSPGIEIRPLVMTSGEEVQNQVFFDNVRVPKSNVLGTIDEGWTVAK
CCCCCCCEEEEEEECCCCCEEEEEEEECCHHHHHHEEECCCCCCHHHCCCCCCCCHHEEE
YLLVHERGGAAAPMLQVMAQELAQSAAGQPGPDGGALIDDPAFAARLADVRIRTEVLEVL
EEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHH
EYRTISAMAQGKNPGPASSMLKILSTELSQQLTELVLEAAGPQGRVYQPHATAPGGPVAH
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCC
YTPPADGYRSGAEWQAVAPLRYFNDRAGSIYAGSNEIQRNILAKAALGL
CCCCCCCCCCCCCCEEECCHHHHCCCCCEEEECCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8759838; 8969508; 9384377 [H]