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The map label for this gene is embR [H]

Identifier: 54027355

GI number: 54027355

Start: 5688804

End: 5689919

Strand: Reverse

Name: embR [H]

Synonym: nfa53810

Alternate gene names: 54027355

Gene position: 5689919-5688804 (Counterclockwise)

Preceding gene: 54027356

Following gene: 54027354

Centisome position: 94.5

GC content: 70.25

Gene sequence:

>1116_bases
ATGAGTCTGGATGTGCGTGTGCTCGGGCCCGTCCGGTTGTTCGTCGGTGGTGAGCCGGTGGCGGTCGGCGGGCCCAAGCC
GCGAGCCCTGCTGGCCGCGCTCACCGTCAACCGGCGCCGCGCGGTCGCCTCGTCCGCACTGGCCGACATGGTCTGGAACG
AGGATCCGCCGGATTCGTATGCGGCCAGCCTGCAGGTGTTCGTCTCCAACATCCGTAAGGCGCTGCGCAATTCCGGCGTC
GACCCGGCCCAGGTGCTGCGCACCGAGTCCTCCGGGTACCGGCTCGAGATCCCCGAGGACGCCTGCGACATCGGCCGTTT
CGAAGCCGCCTGCGCGGCCGGCGCCAAGGCCGCCGACCTCGGCGACCAGGTGCGTGCCGCGCAGCTGTACGGCAAGGCGC
TCGACGAGTGGAGTGGGCGCGCGATGTCGGATCTGGCGGGTCTGCAGTTCGCCGACGGCTTCGCGACCGCGATGGAGGAG
GAGCGACTGCTGGCCGCCTCCGCTCGTATCGACGCCGAGATCGCCTGCGGGCGCGCCTCCTCGGTGATCGGCGAACTGGT
CACCATGACCACCGAACACCCGTTGCGCGAACCGCTGTGGGGGCAGCTGATCACCGCCCTGTACCTGTCCGGCCGCCAGG
CCGACGCGCTGGACGCCTGCCGCCGGGTGCGCACCGTGCTCGCCGACGAACTCGGCATCGATCCCGGTCCCGCCCTGGTC
GAGCTCGAGCAGCGGGTGCTGCGGCAGGAACCGTTGAGCACCAAGGAGTTCAAGCGCGTCGAGCGGATGGCCGCGGCGAT
GACCGAGACGGTCACCGAGGGGCCGCGCGCGGTGCGCAGCGGGCAGCTGCGCCTGCCGGACGGCCGGGCGCTGCCGATCT
CGCACGCGGGTATGCGTATCGGCCGCATGATCGACAACGACCTGGTGCTCGACGACCCGAAGGCCAGCCGCTACCACGCC
CACATCCTGCCCAGCCGCGCCGGCCTGCTCATCAAGGACCTGCATTCGGCCAACGGGGTGTACATCAACGAGGAACCGAT
CGAGAGCGCGTTGCTCGGCGACGGCGACATGATCCGCATCGGCGCGACCGTGCTGATTTTCCAAGCGTTGCAGTAG

Upstream 100 bases:

>100_bases
AGGCGTCGATGTCGGAGCGCGTCGTGGAGGCGTGCAATGATCTGAAGTCCGCGGGACGGTCGATCAGCGCCTGACCCACA
ACGTTCGAGGGCCCGAGCTC

Downstream 100 bases:

>100_bases
GTCCGCAATCCCGGATCGACGCGGCTGTGGATGGTGGGCTGCCTCCCCAGGCCGCGCCGGGAACTCGCGCATACCCGCCC
ACGGGCGCGGTAGGGTCGGG

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 371; Mature: 370

Protein sequence:

>371_residues
MSLDVRVLGPVRLFVGGEPVAVGGPKPRALLAALTVNRRRAVASSALADMVWNEDPPDSYAASLQVFVSNIRKALRNSGV
DPAQVLRTESSGYRLEIPEDACDIGRFEAACAAGAKAADLGDQVRAAQLYGKALDEWSGRAMSDLAGLQFADGFATAMEE
ERLLAASARIDAEIACGRASSVIGELVTMTTEHPLREPLWGQLITALYLSGRQADALDACRRVRTVLADELGIDPGPALV
ELEQRVLRQEPLSTKEFKRVERMAAAMTETVTEGPRAVRSGQLRLPDGRALPISHAGMRIGRMIDNDLVLDDPKASRYHA
HILPSRAGLLIKDLHSANGVYINEEPIESALLGDGDMIRIGATVLIFQALQ

Sequences:

>Translated_371_residues
MSLDVRVLGPVRLFVGGEPVAVGGPKPRALLAALTVNRRRAVASSALADMVWNEDPPDSYAASLQVFVSNIRKALRNSGV
DPAQVLRTESSGYRLEIPEDACDIGRFEAACAAGAKAADLGDQVRAAQLYGKALDEWSGRAMSDLAGLQFADGFATAMEE
ERLLAASARIDAEIACGRASSVIGELVTMTTEHPLREPLWGQLITALYLSGRQADALDACRRVRTVLADELGIDPGPALV
ELEQRVLRQEPLSTKEFKRVERMAAAMTETVTEGPRAVRSGQLRLPDGRALPISHAGMRIGRMIDNDLVLDDPKASRYHA
HILPSRAGLLIKDLHSANGVYINEEPIESALLGDGDMIRIGATVLIFQALQ
>Mature_370_residues
SLDVRVLGPVRLFVGGEPVAVGGPKPRALLAALTVNRRRAVASSALADMVWNEDPPDSYAASLQVFVSNIRKALRNSGVD
PAQVLRTESSGYRLEIPEDACDIGRFEAACAAGAKAADLGDQVRAAQLYGKALDEWSGRAMSDLAGLQFADGFATAMEEE
RLLAASARIDAEIACGRASSVIGELVTMTTEHPLREPLWGQLITALYLSGRQADALDACRRVRTVLADELGIDPGPALVE
LEQRVLRQEPLSTKEFKRVERMAAAMTETVTEGPRAVRSGQLRLPDGRALPISHAGMRIGRMIDNDLVLDDPKASRYHAH
ILPSRAGLLIKDLHSANGVYINEEPIESALLGDGDMIRIGATVLIFQALQ

Specific function: Unknown

COG id: COG3629

COG function: function code T; DNA-binding transcriptional activator of the SARP family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 FHA domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005158
- InterPro:   IPR000253
- InterPro:   IPR001867
- InterPro:   IPR016032
- InterPro:   IPR008984
- InterPro:   IPR011990
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03704 BTAD; PF00498 FHA; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 39921; Mature: 39790

Theoretical pI: Translated: 5.17; Mature: 5.17

Prosite motif: PS50006 FHA_DOMAIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLDVRVLGPVRLFVGGEPVAVGGPKPRALLAALTVNRRRAVASSALADMVWNEDPPDSY
CCCCEEEECCEEEEECCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
AASLQVFVSNIRKALRNSGVDPAQVLRTESSGYRLEIPEDACDIGRFEAACAAGAKAADL
HHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHCCCCHHHH
GDQVRAAQLYGKALDEWSGRAMSDLAGLQFADGFATAMEEERLLAASARIDAEIACGRAS
HHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHH
SVIGELVTMTTEHPLREPLWGQLITALYLSGRQADALDACRRVRTVLADELGIDPGPALV
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHH
ELEQRVLRQEPLSTKEFKRVERMAAAMTETVTEGPRAVRSGQLRLPDGRALPISHAGMRI
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHCCCEECCCCCCCCCHHHHHHH
GRMIDNDLVLDDPKASRYHAHILPSRAGLLIKDLHSANGVYINEEPIESALLGDGDMIRI
HHHHCCCEEECCCCCCCEEEEECCCCCCHHHHHHHCCCCEEECCCCHHHHHCCCCCEEEH
GATVLIFQALQ
HHHHHHHHHCC
>Mature Secondary Structure 
SLDVRVLGPVRLFVGGEPVAVGGPKPRALLAALTVNRRRAVASSALADMVWNEDPPDSY
CCCEEEECCEEEEECCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
AASLQVFVSNIRKALRNSGVDPAQVLRTESSGYRLEIPEDACDIGRFEAACAAGAKAADL
HHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHCCCCHHHH
GDQVRAAQLYGKALDEWSGRAMSDLAGLQFADGFATAMEEERLLAASARIDAEIACGRAS
HHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHH
SVIGELVTMTTEHPLREPLWGQLITALYLSGRQADALDACRRVRTVLADELGIDPGPALV
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHH
ELEQRVLRQEPLSTKEFKRVERMAAAMTETVTEGPRAVRSGQLRLPDGRALPISHAGMRI
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHCCCEECCCCCCCCCHHHHHHH
GRMIDNDLVLDDPKASRYHAHILPSRAGLLIKDLHSANGVYINEEPIESALLGDGDMIRI
HHHHCCCEEECCCCCCCEEEEECCCCCCHHHHHHHCCCCEEECCCCHHHHHCCCCCEEEH
GATVLIFQALQ
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]