Click here to switch to the map view.

The map label for this gene is 54027273

Identifier: 54027273

GI number: 54027273

Start: 5601095

End: 5601661

Strand: Reverse

Name: 54027273

Synonym: nfa52990

Alternate gene names: NA

Gene position: 5601661-5601095 (Counterclockwise)

Preceding gene: 54027274

Following gene: 54027272

Centisome position: 93.03

GC content: 72.84

Gene sequence:

>567_bases
GTGAACTACCCCAATCCCACCTCCGGCGGGCCGCCGTTGCGCGCGCTGGCGATGGTGTTGATCGCGCTCGCCATCGTGTT
CGCCGGTCTGGGCGCGATGTCGATGTCGAGTTCGGATTCCGACGGCGAGGAGTCCGCCGCGCCCACCACCACGAGCGCGG
CCGCGCCCGCGGCGACCACGACCACCACCGCGGCACCGGCGACGACGGCGACCACCACGGTGGCGAGCACACCGCCGCCG
CCCCCACCGCCCGAACCGCAGGTCGCCGCCCCGCCGGCGCCTGCCGTGGATCGCGCGGTGCCGGTGCGGGTGCTCAACAA
CAGCCTCGTCGCCGGGCTGGCCAACCGCACCGCCAACCAGCTCGCCGCGAACGGCTGGACCAATGTCACCGCGGGCAACT
ACGCGGCCGGCACGCTGGCGAAAACGACCGTCTACTACGGTAATTCGGCGGCCGAGCGGGAGGCGGCGCTGGCCATCGCG
CAGGAGCTGGGCGCGGTCGCGGAACCCAAGTCCGCCGGTGTCGGGGACGGATCGGCCGGTGTGATCGTCATCCTGACGGG
TAACTGA

Upstream 100 bases:

>100_bases
GCGAGCAGGCAGAAGGCAAGGGCCGCGCGGCGTCTCGGTTTTCAGGTATGACCGGCGTGACGCGGGCGCACCGGCGCCGT
GAAGGACTAGGGTCGGCACC

Downstream 100 bases:

>100_bases
TTGCCGAGCGCTCCCGCGCGGCCCCGCAACCGGGCAGCACCGGGCGCGTGGCATCATCGTGACCGGTAACGAACCTGTCC
ACCCAGCTTTACTCGTAAAC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MNYPNPTSGGPPLRALAMVLIALAIVFAGLGAMSMSSSDSDGEESAAPTTTSAAAPAATTTTTAAPATTATTTVASTPPP
PPPPEPQVAAPPAPAVDRAVPVRVLNNSLVAGLANRTANQLAANGWTNVTAGNYAAGTLAKTTVYYGNSAAEREAALAIA
QELGAVAEPKSAGVGDGSAGVIVILTGN

Sequences:

>Translated_188_residues
MNYPNPTSGGPPLRALAMVLIALAIVFAGLGAMSMSSSDSDGEESAAPTTTSAAAPAATTTTTAAPATTATTTVASTPPP
PPPPEPQVAAPPAPAVDRAVPVRVLNNSLVAGLANRTANQLAANGWTNVTAGNYAAGTLAKTTVYYGNSAAEREAALAIA
QELGAVAEPKSAGVGDGSAGVIVILTGN
>Mature_188_residues
MNYPNPTSGGPPLRALAMVLIALAIVFAGLGAMSMSSSDSDGEESAAPTTTSAAAPAATTTTTAAPATTATTTVASTPPP
PPPPEPQVAAPPAPAVDRAVPVRVLNNSLVAGLANRTANQLAANGWTNVTAGNYAAGTLAKTTVYYGNSAAEREAALAIA
QELGAVAEPKSAGVGDGSAGVIVILTGN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18291; Mature: 18291

Theoretical pI: Translated: 4.30; Mature: 4.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYPNPTSGGPPLRALAMVLIALAIVFAGLGAMSMSSSDSDGEESAAPTTTSAAAPAATT
CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TTTAAPATTATTTVASTPPPPPPPEPQVAAPPAPAVDRAVPVRVLNNSLVAGLANRTANQ
CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
LAANGWTNVTAGNYAAGTLAKTTVYYGNSAAEREAALAIAQELGAVAEPKSAGVGDGSAG
HHHCCCCCCCCCCCCCCHHEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
VIVILTGN
EEEEEECC
>Mature Secondary Structure
MNYPNPTSGGPPLRALAMVLIALAIVFAGLGAMSMSSSDSDGEESAAPTTTSAAAPAATT
CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TTTAAPATTATTTVASTPPPPPPPEPQVAAPPAPAVDRAVPVRVLNNSLVAGLANRTANQ
CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
LAANGWTNVTAGNYAAGTLAKTTVYYGNSAAEREAALAIAQELGAVAEPKSAGVGDGSAG
HHHCCCCCCCCCCCCCCHHEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
VIVILTGN
EEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA