| Definition | Nocardia farcinica IFM 10152 chromosome, complete genome. |
|---|---|
| Accession | NC_006361 |
| Length | 6,021,225 |
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The map label for this gene is hbhA [H]
Identifier: 54027182
GI number: 54027182
Start: 5503037
End: 5503702
Strand: Reverse
Name: hbhA [H]
Synonym: nfa52080
Alternate gene names: 54027182
Gene position: 5503702-5503037 (Counterclockwise)
Preceding gene: 54027183
Following gene: 54027181
Centisome position: 91.41
GC content: 72.52
Gene sequence:
>666_bases ATGACCGAGAAGACCGCCACCGTCACCAAGCCTCTGCTCGCCGCGGTCGGCGCCGGGGACGCCGTTTACACGGCGGCCCT CGACGTCGTCACCCAGGTGCGCGAGAAGGCCACCACCACCGACGTCTCCGGCCGGGTCGAGGAGGCGCGCGAGCGCTTCG CCCACGTGCCCGCCGATGTGCAGGCCCAGTTCGAGTCGCTGCGCGAGCGGCTGGCCGGCCTGCCCACCGAGCTGCCGGAC GAGCTCGCCGAGCTGCGCGAGAAGTTCACCGCCGAGGAACTGCGCAAGCTGGCCGAGGAGTACTACGCCAAGGTGCTCGA CCTCTACTCCGACCTCGCCGTGCGCGGTGAGGAGACCGTGGAGCGGCTGCGTGCCAACCACCTGGTCGAGGATCAGATCG AGCGCGTGGAGAGCCTCTACAAGGACGCCGCCTCGCGCGCCGAGGAGGTCGTCGGCCGGGTGAACGGCCTGCTGGGCCGT CCGGCCAAGGCGGAGGAGAGCGCTCCCGAGGCCACCGCCACCGCGGCGCCCGTCGTCGACGCCGAGGTCGTCGAGGTGAC CACCGAGACCACCCCCGCCCCGGCCAAGAAGGCCGCCCCCGCCGCGAAGAAGGCGCCGGCCAAGAAGGCCGCCCCGGCGA AGAAGGCCGCCCCGAAGAACGTCTGA
Upstream 100 bases:
>100_bases GGCAGAAGCAGGTGCTGCTGGACATCTACGAATCGTTCCGTCGAGAAAACGGCGAGAACGAGACAACCGACACTCCGCCA CGCCAGGAGAGCGAACAACC
Downstream 100 bases:
>100_bases TCGCGTCCGGGAGCCCGGACCGGGTTTTCCGACCGCCCTCGCGCACGCTGCTGCGCGGGGGCGGTTTTCGTATCATGGGG GAGTGCAAACGGTGAACGGG
Product: putative heparin-binding hemagglutinin
Products: NA
Alternate protein names: Adhesin [H]
Number of amino acids: Translated: 221; Mature: 220
Protein sequence:
>221_residues MTEKTATVTKPLLAAVGAGDAVYTAALDVVTQVREKATTTDVSGRVEEARERFAHVPADVQAQFESLRERLAGLPTELPD ELAELREKFTAEELRKLAEEYYAKVLDLYSDLAVRGEETVERLRANHLVEDQIERVESLYKDAASRAEEVVGRVNGLLGR PAKAEESAPEATATAAPVVDAEVVEVTTETTPAPAKKAAPAAKKAPAKKAAPAKKAAPKNV
Sequences:
>Translated_221_residues MTEKTATVTKPLLAAVGAGDAVYTAALDVVTQVREKATTTDVSGRVEEARERFAHVPADVQAQFESLRERLAGLPTELPD ELAELREKFTAEELRKLAEEYYAKVLDLYSDLAVRGEETVERLRANHLVEDQIERVESLYKDAASRAEEVVGRVNGLLGR PAKAEESAPEATATAAPVVDAEVVEVTTETTPAPAKKAAPAAKKAPAKKAAPAKKAAPKNV >Mature_220_residues TEKTATVTKPLLAAVGAGDAVYTAALDVVTQVREKATTTDVSGRVEEARERFAHVPADVQAQFESLRERLAGLPTELPDE LAELREKFTAEELRKLAEEYYAKVLDLYSDLAVRGEETVERLRANHLVEDQIERVESLYKDAASRAEEVVGRVNGLLGRP AKAEESAPEATATAAPVVDAEVVEVTTETTPAPAKKAAPAAKKAPAKKAAPAKKAAPKNV
Specific function: Required for extrapulmonary dissemination. Mediates adherence to epithelial cells by binding to sulfated glycoconjugates present at the surface of these cells; binds heparin, dextran sulfate, fucoidan and chondroitin sulfate. Promotes hemagglutination of
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell surface [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To M.leprae hbhA [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020340 - ProDom: PD082580 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23713; Mature: 23582
Theoretical pI: Translated: 4.89; Mature: 4.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 0.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEKTATVTKPLLAAVGAGDAVYTAALDVVTQVREKATTTDVSGRVEEARERFAHVPADV CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH QAQFESLRERLAGLPTELPDELAELREKFTAEELRKLAEEYYAKVLDLYSDLAVRGEETV HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH ERLRANHLVEDQIERVESLYKDAASRAEEVVGRVNGLLGRPAKAEESAPEATATAAPVVD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCHHH AEVVEVTTETTPAPAKKAAPAAKKAPAKKAAPAKKAAPKNV HHHHHHHCCCCCCCHHHCCCCHHHCCCHHCCCCCCCCCCCC >Mature Secondary Structure TEKTATVTKPLLAAVGAGDAVYTAALDVVTQVREKATTTDVSGRVEEARERFAHVPADV CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH QAQFESLRERLAGLPTELPDELAELREKFTAEELRKLAEEYYAKVLDLYSDLAVRGEETV HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH ERLRANHLVEDQIERVESLYKDAASRAEEVVGRVNGLLGRPAKAEESAPEATATAAPVVD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCHHH AEVVEVTTETTPAPAKKAAPAAKKAPAKKAAPAKKAAPKNV HHHHHHHCCCCCCCHHHCCCCHHHCCCHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12788972; 11449276 [H]