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The map label for this gene is 54027183

Identifier: 54027183

GI number: 54027183

Start: 5503699

End: 5504109

Strand: Reverse

Name: 54027183

Synonym: nfa52090

Alternate gene names: NA

Gene position: 5504109-5503699 (Counterclockwise)

Preceding gene: 54027184

Following gene: 54027182

Centisome position: 91.41

GC content: 64.72

Gene sequence:

>411_bases
GTGATGGCTGACCATCCCGAGGGCCGCGTGGCGAACGCGGCGCACGACATCGGAGGTTTCATCAGGGCACAGCGGGAAGC
TGCGCAAGTCTCGTTGCGTCAACTCGCCGCCCTGGCGGGGGTGAGCAATCCGTATCTCAGCCAGATCGAGCGGGGATTGC
GCAACCCGTCCGCGGAGGTACTCGCGCAGATCGCGAAAGCACTGCGGGTGTCCTCGGAGGTCTTGTACGTACGGGCCGGC
TATCTCGAGCAGCGGCCGCACGGTCCGGTCCGGGACGCCCTGCTTGCCGACACCTCCATCACGGAGCGGCAGAAGCAGGT
GCTGCTGGACATCTACGAATCGTTCCGTCGAGAAAACGGCGAGAACGAGACAACCGACACTCCGCCACGCCAGGAGAGCG
AACAACCATGA

Upstream 100 bases:

>100_bases
GCCGGCGCGGGCGGTAGCCCCCGGAATTTCTGCTAACACGGTGCTTGCAAGAGCTAGCACCCTGACCTAGACTCGTTCTC
GTACAACCGCCAGAAGGTGA

Downstream 100 bases:

>100_bases
CCGAGAAGACCGCCACCGTCACCAAGCCTCTGCTCGCCGCGGTCGGCGCCGGGGACGCCGTTTACACGGCGGCCCTCGAC
GTCGTCACCCAGGTGCGCGA

Product: putative DNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 136; Mature: 136

Protein sequence:

>136_residues
MMADHPEGRVANAAHDIGGFIRAQREAAQVSLRQLAALAGVSNPYLSQIERGLRNPSAEVLAQIAKALRVSSEVLYVRAG
YLEQRPHGPVRDALLADTSITERQKQVLLDIYESFRRENGENETTDTPPRQESEQP

Sequences:

>Translated_136_residues
MMADHPEGRVANAAHDIGGFIRAQREAAQVSLRQLAALAGVSNPYLSQIERGLRNPSAEVLAQIAKALRVSSEVLYVRAG
YLEQRPHGPVRDALLADTSITERQKQVLLDIYESFRRENGENETTDTPPRQESEQP
>Mature_136_residues
MMADHPEGRVANAAHDIGGFIRAQREAAQVSLRQLAALAGVSNPYLSQIERGLRNPSAEVLAQIAKALRVSSEVLYVRAG
YLEQRPHGPVRDALLADTSITERQKQVLLDIYESFRRENGENETTDTPPRQESEQP

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 15076; Mature: 15076

Theoretical pI: Translated: 5.71; Mature: 5.71

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMADHPEGRVANAAHDIGGFIRAQREAAQVSLRQLAALAGVSNPYLSQIERGLRNPSAEV
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHH
LAQIAKALRVSSEVLYVRAGYLEQRPHGPVRDALLADTSITERQKQVLLDIYESFRRENG
HHHHHHHHHHHHHHHHHHHCHHHCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC
ENETTDTPPRQESEQP
CCCCCCCCCCCCCCCC
>Mature Secondary Structure
MMADHPEGRVANAAHDIGGFIRAQREAAQVSLRQLAALAGVSNPYLSQIERGLRNPSAEV
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHH
LAQIAKALRVSSEVLYVRAGYLEQRPHGPVRDALLADTSITERQKQVLLDIYESFRRENG
HHHHHHHHHHHHHHHHHHHCHHHCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC
ENETTDTPPRQESEQP
CCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]