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The map label for this gene is ccsB [H]

Identifier: 54027130

GI number: 54027130

Start: 5456156

End: 5457829

Strand: Reverse

Name: ccsB [H]

Synonym: nfa51560

Alternate gene names: 54027130

Gene position: 5457829-5456156 (Counterclockwise)

Preceding gene: 54027131

Following gene: 54027129

Centisome position: 90.64

GC content: 70.31

Gene sequence:

>1674_bases
ATGACCGTGACCGAACAGCCCGCCGCCGACCCCGCCCCCCGGACCCCGCCCCGCCAGTCGCTCCCCGGGCGCGCCTGGGC
GCTGGTGCGCAACACCTGGCGCGGCCTCACCAGCATGCGCACCGCGCTGGTGCTGCTGTTCCTGCTGGCGCTGGCCGCCA
TTCCCGGCGCGCTGCTGCCCCAGCGCAGCCTCAACGAGCAGAAGGTCGAGCAGTACATCGCCGACCGGCCGACGCTCGGG
CCGTGGATGGACCGGTTCGAGTTGTTCGACGTGTTCGGCAGCTTCTGGTTCACCGCGATCTACGTGCTGCTGTTCATCTC
CCTGGTGGGCTGCATCCTGCCGCGCTCGCTGGACCACTACCGCGCGCTGCGCACCCCGCCGGTGCGGGCGCCGCGCAATC
TGGCGCGGCTGCCGCACCATCACGAGGACCGTTCGGCGCGCACGCCGCAGCAGGTGATCGACCATGCCCGCACCCAGTTG
CGTGGCTGGCGCACCGAGGTGCGGGAGGGTGGTCGCGAGGGCGAGCTCACCGTGTCGGCGGAGAAGGGCTACTTCCGCGA
ATTCGGCAACCTGGTCTTCCACCTGGCGCTGGTCGGGCTGCTGGTGTCGATCGCGGTCGGCAAGCTGTTCGGTTACGAGG
GCAGCGTCATCGTCATCGCCGACGACGGGCCCGGCTTCTGCACCACCTCGCCCGCGGTGTTCGACTCCTTCCGGGCGGGC
AACGTCAACGACGGCACCGGTATGACCCCGATCTGCGTGCGGGTCAAGGACTTCCGCGCCGACTACCTCGACACCGGCCA
GGCCGAGATGTTCACTTCCAATATCGCCTACCAGGCCGGGGACGACCTGCGCACCGGCACCTGGCGCGAGACCACCTTGA
AGGTGAACCATCCGCTGCGCGTCGAGGGCGACCGGCTCTACCTGCAGGGTCACGGCTACGCGCCGACCTTCACCGTCACC
TTCCCGGACGGGCAGACCAGGACCGAGACCATCCAGTGGCGGCCCGACGACGCGCGCACCTTCCTGTCCAGCGGCGTGCT
GCGCATCGACCCGCCCGGCGGCATGTACGCCACCGACGAGGAGCGCCGCCGGAACCAGATCGCCATCGAGGGCCTGTTCG
CGCCGACCGCCATGCTGCACGGCAGCCTGCTCACCTCGGTGTTCCCGCGGATGGACGACCCGGCCGTCGCGGTCGACATC
TATCGCGGCGACACCGGCCTGGACACCGGCAGGCCGCAGTCGTTGTTCGCGCTGGACCAGGAGCTGGTCCGGCAGGGCAG
GCTCGCCAAGGAAGCCAGGGTGAACCTGCGCCCCGGTGAGTCGACCACTCTGCCCAACGGCACGAAGGTCACCTTCGACG
GCGCGAAGGAGTTCGTGAACCTGCAGGTCTCGCACGACCCGGCGCAGCAGTGGGTGCTGGTGAGCGCGCTGACGATGATG
GCGGGCCTGCTGGTCTCGCTGCTGGTGAAGCGGCGCCGTATCTGGATCCGGGTCTACCCCGCCCGCGACGATGCCGGTAC
CGTGGACCAACGACACACCGTAGTAGAGATGGGCGGTCTGGCCAGGACCGACCAGGCGGGCTGGGGCGCCGAGTTCGACC
GGCTGCGCGCGCGCCTGCTCGAACCGGACACCGACACGGCGGCCCGCACCGGGGCCGACACCACGGGAGACTGA

Upstream 100 bases:

>100_bases
TGCTGCTCGTCGCGGTCGGGATCGCGCTGGTCACCGGAGCCTGGGACCAGTTCGTCGGCTGGGTGCGCGACGCGTTCGTC
TCCGAGGTGACCCTGCCGAT

Downstream 100 bases:

>100_bases
CGATGCCGATCGACGACACCCTCGCCCAGTACAGCGATCTCGCCTTCAAGACCGCGCTGATCGTGTACACCCTGGTGCTC
GGGCTGCTGATCTGGCAGTA

Product: putative cytochrome c biogenesis membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 557; Mature: 556

Protein sequence:

>557_residues
MTVTEQPAADPAPRTPPRQSLPGRAWALVRNTWRGLTSMRTALVLLFLLALAAIPGALLPQRSLNEQKVEQYIADRPTLG
PWMDRFELFDVFGSFWFTAIYVLLFISLVGCILPRSLDHYRALRTPPVRAPRNLARLPHHHEDRSARTPQQVIDHARTQL
RGWRTEVREGGREGELTVSAEKGYFREFGNLVFHLALVGLLVSIAVGKLFGYEGSVIVIADDGPGFCTTSPAVFDSFRAG
NVNDGTGMTPICVRVKDFRADYLDTGQAEMFTSNIAYQAGDDLRTGTWRETTLKVNHPLRVEGDRLYLQGHGYAPTFTVT
FPDGQTRTETIQWRPDDARTFLSSGVLRIDPPGGMYATDEERRRNQIAIEGLFAPTAMLHGSLLTSVFPRMDDPAVAVDI
YRGDTGLDTGRPQSLFALDQELVRQGRLAKEARVNLRPGESTTLPNGTKVTFDGAKEFVNLQVSHDPAQQWVLVSALTMM
AGLLVSLLVKRRRIWIRVYPARDDAGTVDQRHTVVEMGGLARTDQAGWGAEFDRLRARLLEPDTDTAARTGADTTGD

Sequences:

>Translated_557_residues
MTVTEQPAADPAPRTPPRQSLPGRAWALVRNTWRGLTSMRTALVLLFLLALAAIPGALLPQRSLNEQKVEQYIADRPTLG
PWMDRFELFDVFGSFWFTAIYVLLFISLVGCILPRSLDHYRALRTPPVRAPRNLARLPHHHEDRSARTPQQVIDHARTQL
RGWRTEVREGGREGELTVSAEKGYFREFGNLVFHLALVGLLVSIAVGKLFGYEGSVIVIADDGPGFCTTSPAVFDSFRAG
NVNDGTGMTPICVRVKDFRADYLDTGQAEMFTSNIAYQAGDDLRTGTWRETTLKVNHPLRVEGDRLYLQGHGYAPTFTVT
FPDGQTRTETIQWRPDDARTFLSSGVLRIDPPGGMYATDEERRRNQIAIEGLFAPTAMLHGSLLTSVFPRMDDPAVAVDI
YRGDTGLDTGRPQSLFALDQELVRQGRLAKEARVNLRPGESTTLPNGTKVTFDGAKEFVNLQVSHDPAQQWVLVSALTMM
AGLLVSLLVKRRRIWIRVYPARDDAGTVDQRHTVVEMGGLARTDQAGWGAEFDRLRARLLEPDTDTAARTGADTTGD
>Mature_556_residues
TVTEQPAADPAPRTPPRQSLPGRAWALVRNTWRGLTSMRTALVLLFLLALAAIPGALLPQRSLNEQKVEQYIADRPTLGP
WMDRFELFDVFGSFWFTAIYVLLFISLVGCILPRSLDHYRALRTPPVRAPRNLARLPHHHEDRSARTPQQVIDHARTQLR
GWRTEVREGGREGELTVSAEKGYFREFGNLVFHLALVGLLVSIAVGKLFGYEGSVIVIADDGPGFCTTSPAVFDSFRAGN
VNDGTGMTPICVRVKDFRADYLDTGQAEMFTSNIAYQAGDDLRTGTWRETTLKVNHPLRVEGDRLYLQGHGYAPTFTVTF
PDGQTRTETIQWRPDDARTFLSSGVLRIDPPGGMYATDEERRRNQIAIEGLFAPTAMLHGSLLTSVFPRMDDPAVAVDIY
RGDTGLDTGRPQSLFALDQELVRQGRLAKEARVNLRPGESTTLPNGTKVTFDGAKEFVNLQVSHDPAQQWVLVSALTMMA
GLLVSLLVKRRRIWIRVYPARDDAGTVDQRHTVVEMGGLARTDQAGWGAEFDRLRARLLEPDTDTAARTGADTTGD

Specific function: Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment [H]

COG id: COG1333

COG function: function code O; ResB protein required for cytochrome c biosynthesis

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccs1/ccsB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007816 [H]

Pfam domain/function: PF05140 ResB [H]

EC number: NA

Molecular weight: Translated: 61882; Mature: 61751

Theoretical pI: Translated: 7.38; Mature: 7.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVTEQPAADPAPRTPPRQSLPGRAWALVRNTWRGLTSMRTALVLLFLLALAAIPGALLP
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
QRSLNEQKVEQYIADRPTLGPWMDRFELFDVFGSFWFTAIYVLLFISLVGCILPRSLDHY
CCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
RALRTPPVRAPRNLARLPHHHEDRSARTPQQVIDHARTQLRGWRTEVREGGREGELTVSA
HHHCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
EKGYFREFGNLVFHLALVGLLVSIAVGKLFGYEGSVIVIADDGPGFCTTSPAVFDSFRAG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHCCCCC
NVNDGTGMTPICVRVKDFRADYLDTGQAEMFTSNIAYQAGDDLRTGTWRETTLKVNHPLR
CCCCCCCCCCEEEEEEHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCEE
VEGDRLYLQGHGYAPTFTVTFPDGQTRTETIQWRPDDARTFLSSGVLRIDPPGGMYATDE
ECCCEEEEEECCCCCEEEEECCCCCCCCCEEEECCCHHHHHHHCCCEEECCCCCCCCCCH
ERRRNQIAIEGLFAPTAMLHGSLLTSVFPRMDDPAVAVDIYRGDTGLDTGRPQSLFALDQ
HHHCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHH
ELVRQGRLAKEARVNLRPGESTTLPNGTKVTFDGAKEFVNLQVSHDPAQQWVLVSALTMM
HHHHCCCCHHHHCCEECCCCCCCCCCCCEEEECCCCCEEEEEECCCHHHHHHHHHHHHHH
AGLLVSLLVKRRRIWIRVYPARDDAGTVDQRHTVVEMGGLARTDQAGWGAEFDRLRARLL
HHHHHHHHHHCCEEEEEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHC
EPDTDTAARTGADTTGD
CCCCCHHHHCCCCCCCC
>Mature Secondary Structure 
TVTEQPAADPAPRTPPRQSLPGRAWALVRNTWRGLTSMRTALVLLFLLALAAIPGALLP
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
QRSLNEQKVEQYIADRPTLGPWMDRFELFDVFGSFWFTAIYVLLFISLVGCILPRSLDHY
CCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
RALRTPPVRAPRNLARLPHHHEDRSARTPQQVIDHARTQLRGWRTEVREGGREGELTVSA
HHHCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
EKGYFREFGNLVFHLALVGLLVSIAVGKLFGYEGSVIVIADDGPGFCTTSPAVFDSFRAG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHCCCCC
NVNDGTGMTPICVRVKDFRADYLDTGQAEMFTSNIAYQAGDDLRTGTWRETTLKVNHPLR
CCCCCCCCCCEEEEEEHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCEE
VEGDRLYLQGHGYAPTFTVTFPDGQTRTETIQWRPDDARTFLSSGVLRIDPPGGMYATDE
ECCCEEEEEECCCCCEEEEECCCCCCCCCEEEECCCHHHHHHHCCCEEECCCCCCCCCCH
ERRRNQIAIEGLFAPTAMLHGSLLTSVFPRMDDPAVAVDIYRGDTGLDTGRPQSLFALDQ
HHHCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHH
ELVRQGRLAKEARVNLRPGESTTLPNGTKVTFDGAKEFVNLQVSHDPAQQWVLVSALTMM
HHHHCCCCHHHHCCEECCCCCCCCCCCCEEEECCCCCEEEEEECCCHHHHHHHHHHHHHH
AGLLVSLLVKRRRIWIRVYPARDDAGTVDQRHTVVEMGGLARTDQAGWGAEFDRLRARLL
HHHHHHHHHHCCEEEEEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHC
EPDTDTAARTGADTTGD
CCCCCHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA