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The map label for this gene is ccsA [H]

Identifier: 54027129

GI number: 54027129

Start: 5455185

End: 5456153

Strand: Reverse

Name: ccsA [H]

Synonym: nfa51550

Alternate gene names: 54027129

Gene position: 5456153-5455185 (Counterclockwise)

Preceding gene: 54027130

Following gene: 54027126

Centisome position: 90.62

GC content: 68.42

Gene sequence:

>969_bases
ATGCCGATCGACGACACCCTCGCCCAGTACAGCGATCTCGCCTTCAAGACCGCGCTGATCGTGTACACCCTGGTGCTCGG
GCTGCTGATCTGGCAGTACTCCTCGGCCCAGGTGCGCAAGGTCGGCGAGCGCGAACTCGTCACTGCCGGTGGCGGGGGAG
AGCGGCCGACCGGGCCCGGCAAGCTGGTGGAACCGGCGGCCAGGCCGCTGTCGGAGCGACTGGGCAACATGGCGTTCTCG
GTGCTCGTCGTCGGCTTCGTGCTGCACGTGGCCTCGATCGTGTTGCGTGGCTTCGCCACCGACCGGTTCCCGCTGGGCAA
CATGTACGAGTTCGTCACCATGGCCTGTGCGGCCGCGGTGCTGGTCGGCTTCGGACTGCTGCGCGAGCAGCGCTACCGCT
CGATGTGGGTGTTCCTGCTCGTGCCGGTGCTGATCCTGATGTTCCTGGCGGGCACCGTGCTCTACGCCGACGCCGCGCCG
GTGGTGCCCGCGCTGCGCTCGTTCTGGCTGCCGCTGCACGTGACCATCGTCAGCGTCGGCAGTGGTGTGTTCCTGGTCTC
GGGTGTGGCCAGCCTGCTGTTCCTGTACCGGATCCGCCAGCCCGAGGGTCAGGAGTCGGGCAACGTCCTCGGCGCGATCG
CCAAGCGCCTGCCCGACGCCCGCACCCTGGACCGGCTCGCCTACCGCACCACGATCATCGGCTTCCCGCTGTTCGGCGCC
GGCGTCATCCTGGGCGCCATCTGGGCCGAGGCCGCCTGGGGCCGCTTCTGGGGCTGGGACCCCAAGGAGACCTGTTCCTT
CATCGCCTGGGTCCTCTACGCCGCCTACCTGCACGCCCGCGCCACCTCCGGCTGGCGCGACACCAAGGCCGCCTGGATCA
ACGTGGCCGCCTTCGTCGCCATGCTCTTCAACCTGTTCATCATCAACTTGGTTATCAGCGGCCTGCACAGCTACGCGGGA
CTCACCTAG

Upstream 100 bases:

>100_bases
CGGGCTGGGGCGCCGAGTTCGACCGGCTGCGCGCGCGCCTGCTCGAACCGGACACCGACACGGCGGCCCGCACCGGGGCC
GACACCACGGGAGACTGACG

Downstream 100 bases:

>100_bases
GAAGCCGAACGGGGGCGGGTGCATTGCTCGAGGATGGTGCGGGCCCTGGCCCCGACTCGGGCCCCGCACGGCGGGATCTG
TCACTACGAGATCTCTTTCT

Product: putative cytochrome c assembly protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 321

Protein sequence:

>322_residues
MPIDDTLAQYSDLAFKTALIVYTLVLGLLIWQYSSAQVRKVGERELVTAGGGGERPTGPGKLVEPAARPLSERLGNMAFS
VLVVGFVLHVASIVLRGFATDRFPLGNMYEFVTMACAAAVLVGFGLLREQRYRSMWVFLLVPVLILMFLAGTVLYADAAP
VVPALRSFWLPLHVTIVSVGSGVFLVSGVASLLFLYRIRQPEGQESGNVLGAIAKRLPDARTLDRLAYRTTIIGFPLFGA
GVILGAIWAEAAWGRFWGWDPKETCSFIAWVLYAAYLHARATSGWRDTKAAWINVAAFVAMLFNLFIINLVISGLHSYAG
LT

Sequences:

>Translated_322_residues
MPIDDTLAQYSDLAFKTALIVYTLVLGLLIWQYSSAQVRKVGERELVTAGGGGERPTGPGKLVEPAARPLSERLGNMAFS
VLVVGFVLHVASIVLRGFATDRFPLGNMYEFVTMACAAAVLVGFGLLREQRYRSMWVFLLVPVLILMFLAGTVLYADAAP
VVPALRSFWLPLHVTIVSVGSGVFLVSGVASLLFLYRIRQPEGQESGNVLGAIAKRLPDARTLDRLAYRTTIIGFPLFGA
GVILGAIWAEAAWGRFWGWDPKETCSFIAWVLYAAYLHARATSGWRDTKAAWINVAAFVAMLFNLFIINLVISGLHSYAG
LT
>Mature_321_residues
PIDDTLAQYSDLAFKTALIVYTLVLGLLIWQYSSAQVRKVGERELVTAGGGGERPTGPGKLVEPAARPLSERLGNMAFSV
LVVGFVLHVASIVLRGFATDRFPLGNMYEFVTMACAAAVLVGFGLLREQRYRSMWVFLLVPVLILMFLAGTVLYADAAPV
VPALRSFWLPLHVTIVSVGSGVFLVSGVASLLFLYRIRQPEGQESGNVLGAIAKRLPDARTLDRLAYRTTIIGFPLFGAG
VILGAIWAEAAWGRFWGWDPKETCSFIAWVLYAAYLHARATSGWRDTKAAWINVAAFVAMLFNLFIINLVISGLHSYAGL
T

Specific function: Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment [H]

COG id: COG0755

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR017562 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 35134; Mature: 35003

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPIDDTLAQYSDLAFKTALIVYTLVLGLLIWQYSSAQVRKVGERELVTAGGGGERPTGPG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHEEECCCCCCCCCCCC
KLVEPAARPLSERLGNMAFSVLVVGFVLHVASIVLRGFATDRFPLGNMYEFVTMACAAAV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
LVGFGLLREQRYRSMWVFLLVPVLILMFLAGTVLYADAAPVVPALRSFWLPLHVTIVSVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHC
SGVFLVSGVASLLFLYRIRQPEGQESGNVLGAIAKRLPDARTLDRLAYRTTIIGFPLFGA
CCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCHHHHH
GVILGAIWAEAAWGRFWGWDPKETCSFIAWVLYAAYLHARATSGWRDTKAAWINVAAFVA
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
MLFNLFIINLVISGLHSYAGLT
HHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PIDDTLAQYSDLAFKTALIVYTLVLGLLIWQYSSAQVRKVGERELVTAGGGGERPTGPG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHEEECCCCCCCCCCCC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HHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 14621292 [H]