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The map label for this gene is ygdL [C]

Identifier: 54026891

GI number: 54026891

Start: 5134640

End: 5136781

Strand: Reverse

Name: ygdL [C]

Synonym: nfa49170

Alternate gene names: 54026891

Gene position: 5136781-5134640 (Counterclockwise)

Preceding gene: 54026892

Following gene: 54026890

Centisome position: 85.31

GC content: 72.64

Gene sequence:

>2142_bases
ATGACCGACGAGGCCGACCAAGGCGCCGAGCACCGGCCACTGATCCTCGACGAGCACGCCGACGACGACGCCGCCGCGCT
GGCCCGGCTGCGCACCACCCGGTCGATCCGCATCCTCGACCTGCGCGACCCGCTGCGGGCCGAGCTGGCGAAGGTGTGCG
ATCCACCGGAGGGGCCCGAATCGGACCGCTGGGTCTACTACCCCTGGCGGCGGGTGCTGGTCGGCCTGCCCGGCCCGCGC
ACCTTCCGCGCGGTCCGGCTCGACCGCAACCGCAACAAGCTCACTCGCGCCGAACAGGCCGCCCTCGGCGAGATGAAGGT
CGGCATCGTCGGCCAGAGCGTCGGACACGCCATCGCGCACACGCTCGCACTCGAGGGCTCCTGCGGGCTGCTGCGGCTGG
CCGATTTCGACGACATCGAACTGTCCAACCTCAACCGGGTGCCGGGCACCCTGTTCGACATCGGCGTGAACAAGGCGGTG
GTCACCGCGCGCCGCATCGCCGAACTCGACCCCTACCTGCCCGTCGAGGTCATGACCTGCGGTGTCGAGGACGGCAGCGT
CGACGAATTCCTGCACGGGCTCACCCTGGTGCTCGAGGAGTGCGATTCCCTCGACGTGAAATTCGCCGTGCGCGAGGGCG
CGCGCCGACACCGGCTGCCGCTGCTCATGGACACCAGCGACCGCGGCCTGTTCGACGTCGAACGCTACGACCTGGAACCC
GATCGCCCGCCCTTCCACGGACTGCTCGGCGCCACCACCGCCGCCGACCTGCGCGGCCTGACCACGAAAGAGAAGGCGCC
GCACGTCATGCGGATCCTCGACCCCGGCGAGCTGTCCGCCCGGATGGCGGCCAGCCTCGCCGAGATCGACGAGACCGTGA
CCACCTGGCCGCAGCTCGGCGGTGACGTGCAACTCGGCGCGGCGATCGCGGCCACCGCGGTGCGCCGGATCGGGCTCGGC
CTCAAACTGTCCTCCGGCCGCACCCGGGTCGACCTCGAGCGCGCGCTCGACGGGCTCGCCGAACCCGCCCCGGTCGAGGA
TCTGGTGTGGGACGACGGACCCGAACCCGGCCTGCTCCCGCCCGGCCCGCCGCGCGCCAAGGTGGCGGGCACCGCGCAGC
GCGCGCCCTCGGGCGGCAACGTGCAGCCGTGGACGCTGCACCTGACCGACGAAGAGCTGCGCATCGCGCTGGATCCGGGA
CGCTCCTCGGCCATGGACATCGGCTACCGCGGCAGCGCGGTCGCGATCGGCGCCGCCCTGCACAACGCCAGGGCGGCCGC
CGCCGCGCACGGCCTGCTCGGCGAGCACCGCCTGATCGAGGACGAGAGCGCCCCGCTCACGGCGGTCCTGCGCTTCGGCG
CGGGCAGCGACCAGCTGTTGGCGCGGGACTATCCCGCCGCGCTCACCAGGGCGACCAACCGCAGGCTCGGCACCGGCGCG
CCCATCCGTGACGGCGTGCTCGCCGCCCTCGCGGCCGCCGCGCGCGCGGCGGGCGGGCGACTGCACACCCTGACCGATCG
CGCGGCGCTGGCCGAGGCCGCCGAATTGCTCGGCGGCTCCGATCGGGCCCGCTTCCTCACCCCGCGCCTGCACCAGGAGA
TGTTCGAGGAACTGCGCGGCCCCGGCGAGGATCTGCGCGACGGCATCGACCTGCGCAGCATGGAACTGGCACCCGACGAG
CACGCCAAACTCCGCATCGCGGCCCGGTCCGATGTGATGGACCGACTGCGCGAATGGTCCGGCGGCCGCGCGCTCGGCGA
ACTGACCAGGGACCGGGTGCTGTCGAGTTCGGCGCTGGTCGCGGTCACCCTGCCCTGCGAGGGCGGCCGCGACGCGGCCT
CGCTGAGCGACTACGCCCGGGCAGGCGCGGCCCTGGAACGGGTGTGGCTGGAGGCCGGACGACGAGGGCTGGCCGTGCAA
CCGGTGTCGCCGGTGTTCCTCTACGCACACCGCGCCGAGGAGCTGACCGCGATTTCAGAGGATTTCGCGGATACACTAAC
GTCACTTCAGGGCCGTTTCCTGGACCTGCTGGGAGTGCCAGGGCATGAGATCATGGCGTTGGTGCTTCGTCTGAGCTACG
CGGCAGCAGCCACGGTCCGCAGCAGGCGGTTACCAGCGCCGGGTGCGGGCCAGGGCAGCTAG

Upstream 100 bases:

>100_bases
CGACCCGGTCGCAGAGCGCGCTCACCATGATCGAGCGCGCCGCGCTGCGCGCGTGGGGCGTGCCGCGGCCGGTGCTCGCG
ACGAAGGGCGGGGCGGCGCG

Downstream 100 bases:

>100_bases
CACGATCGGAGACAAGGTGCCTCGGCGAACGCTCGACTCACTGGTGACGCAAGTCGCCTCCGAGTTGATGGGCGTCGACG
CCACCACCATGGTGGCGTCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 713; Mature: 712

Protein sequence:

>713_residues
MTDEADQGAEHRPLILDEHADDDAAALARLRTTRSIRILDLRDPLRAELAKVCDPPEGPESDRWVYYPWRRVLVGLPGPR
TFRAVRLDRNRNKLTRAEQAALGEMKVGIVGQSVGHAIAHTLALEGSCGLLRLADFDDIELSNLNRVPGTLFDIGVNKAV
VTARRIAELDPYLPVEVMTCGVEDGSVDEFLHGLTLVLEECDSLDVKFAVREGARRHRLPLLMDTSDRGLFDVERYDLEP
DRPPFHGLLGATTAADLRGLTTKEKAPHVMRILDPGELSARMAASLAEIDETVTTWPQLGGDVQLGAAIAATAVRRIGLG
LKLSSGRTRVDLERALDGLAEPAPVEDLVWDDGPEPGLLPPGPPRAKVAGTAQRAPSGGNVQPWTLHLTDEELRIALDPG
RSSAMDIGYRGSAVAIGAALHNARAAAAAHGLLGEHRLIEDESAPLTAVLRFGAGSDQLLARDYPAALTRATNRRLGTGA
PIRDGVLAALAAAARAAGGRLHTLTDRAALAEAAELLGGSDRARFLTPRLHQEMFEELRGPGEDLRDGIDLRSMELAPDE
HAKLRIAARSDVMDRLREWSGGRALGELTRDRVLSSSALVAVTLPCEGGRDAASLSDYARAGAALERVWLEAGRRGLAVQ
PVSPVFLYAHRAEELTAISEDFADTLTSLQGRFLDLLGVPGHEIMALVLRLSYAAAATVRSRRLPAPGAGQGS

Sequences:

>Translated_713_residues
MTDEADQGAEHRPLILDEHADDDAAALARLRTTRSIRILDLRDPLRAELAKVCDPPEGPESDRWVYYPWRRVLVGLPGPR
TFRAVRLDRNRNKLTRAEQAALGEMKVGIVGQSVGHAIAHTLALEGSCGLLRLADFDDIELSNLNRVPGTLFDIGVNKAV
VTARRIAELDPYLPVEVMTCGVEDGSVDEFLHGLTLVLEECDSLDVKFAVREGARRHRLPLLMDTSDRGLFDVERYDLEP
DRPPFHGLLGATTAADLRGLTTKEKAPHVMRILDPGELSARMAASLAEIDETVTTWPQLGGDVQLGAAIAATAVRRIGLG
LKLSSGRTRVDLERALDGLAEPAPVEDLVWDDGPEPGLLPPGPPRAKVAGTAQRAPSGGNVQPWTLHLTDEELRIALDPG
RSSAMDIGYRGSAVAIGAALHNARAAAAAHGLLGEHRLIEDESAPLTAVLRFGAGSDQLLARDYPAALTRATNRRLGTGA
PIRDGVLAALAAAARAAGGRLHTLTDRAALAEAAELLGGSDRARFLTPRLHQEMFEELRGPGEDLRDGIDLRSMELAPDE
HAKLRIAARSDVMDRLREWSGGRALGELTRDRVLSSSALVAVTLPCEGGRDAASLSDYARAGAALERVWLEAGRRGLAVQ
PVSPVFLYAHRAEELTAISEDFADTLTSLQGRFLDLLGVPGHEIMALVLRLSYAAAATVRSRRLPAPGAGQGS
>Mature_712_residues
TDEADQGAEHRPLILDEHADDDAAALARLRTTRSIRILDLRDPLRAELAKVCDPPEGPESDRWVYYPWRRVLVGLPGPRT
FRAVRLDRNRNKLTRAEQAALGEMKVGIVGQSVGHAIAHTLALEGSCGLLRLADFDDIELSNLNRVPGTLFDIGVNKAVV
TARRIAELDPYLPVEVMTCGVEDGSVDEFLHGLTLVLEECDSLDVKFAVREGARRHRLPLLMDTSDRGLFDVERYDLEPD
RPPFHGLLGATTAADLRGLTTKEKAPHVMRILDPGELSARMAASLAEIDETVTTWPQLGGDVQLGAAIAATAVRRIGLGL
KLSSGRTRVDLERALDGLAEPAPVEDLVWDDGPEPGLLPPGPPRAKVAGTAQRAPSGGNVQPWTLHLTDEELRIALDPGR
SSAMDIGYRGSAVAIGAALHNARAAAAAHGLLGEHRLIEDESAPLTAVLRFGAGSDQLLARDYPAALTRATNRRLGTGAP
IRDGVLAALAAAARAAGGRLHTLTDRAALAEAAELLGGSDRARFLTPRLHQEMFEELRGPGEDLRDGIDLRSMELAPDEH
AKLRIAARSDVMDRLREWSGGRALGELTRDRVLSSSALVAVTLPCEGGRDAASLSDYARAGAALERVWLEAGRRGLAVQP
VSPVFLYAHRAEELTAISEDFADTLTSLQGRFLDLLGVPGHEIMALVLRLSYAAAATVRSRRLPAPGAGQGS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009036
- InterPro:   IPR016040
- InterPro:   IPR000594 [H]

Pfam domain/function: PF00899 ThiF [H]

EC number: NA

Molecular weight: Translated: 76563; Mature: 76432

Theoretical pI: Translated: 5.47; Mature: 5.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDEADQGAEHRPLILDEHADDDAAALARLRTTRSIRILDLRDPLRAELAKVCDPPEGPE
CCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCCCC
SDRWVYYPWRRVLVGLPGPRTFRAVRLDRNRNKLTRAEQAALGEMKVGIVGQSVGHAIAH
CCCEEECCHHHEEECCCCCCCEEEEEECCCCHHHHHHHHHHHCCEEEEEECHHHHHHHHH
TLALEGSCGLLRLADFDDIELSNLNRVPGTLFDIGVNKAVVTARRIAELDPYLPVEVMTC
HHEECCCCCEEEECCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHCCCCCCEEEEEE
GVEDGSVDEFLHGLTLVLEECDSLDVKFAVREGARRHRLPLLMDTSDRGLFDVERYDLEP
CCCCCCHHHHHHHHHHHHHHCCCCCEEEHHHCCHHHCCCCEEEECCCCCCEEHHHCCCCC
DRPPFHGLLGATTAADLRGLTTKEKAPHVMRILDPGELSARMAASLAEIDETVTTWPQLG
CCCCCHHHHHCCHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCC
GDVQLGAAIAATAVRRIGLGLKLSSGRTRVDLERALDGLAEPAPVEDLVWDDGPEPGLLP
CCEEHHHHHHHHHHHHHCCCEEECCCCCEEEHHHHHHHCCCCCCCHHHCCCCCCCCCCCC
PGPPRAKVAGTAQRAPSGGNVQPWTLHLTDEELRIALDPGRSSAMDIGYRGSAVAIGAAL
CCCCCCCCCCCHHCCCCCCCCCCEEEEEECCCEEEEECCCCCCCEECCCCCCCEEEHHHH
HNARAAAAAHGLLGEHRLIEDESAPLTAVLRFGAGSDQLLARDYPAALTRATNRRLGTGA
HHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHCCCCHHHHHHHCCCCCCCC
PIRDGVLAALAAAARAAGGRLHTLTDRAALAEAAELLGGSDRARFLTPRLHQEMFEELRG
CCHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHCCCCCCHHCCHHHHHHHHHHHCC
PGEDLRDGIDLRSMELAPDEHAKLRIAARSDVMDRLREWSGGRALGELTRDRVLSSSALV
CCHHHHCCCCCEEEECCCCCCCEEEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEE
AVTLPCEGGRDAASLSDYARAGAALERVWLEAGRRGLAVQPVSPVFLYAHRAEELTAISE
EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEHHHHHHHHHHH
DFADTLTSLQGRFLDLLGVPGHEIMALVLRLSYAAAATVRSRRLPAPGAGQGS
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
TDEADQGAEHRPLILDEHADDDAAALARLRTTRSIRILDLRDPLRAELAKVCDPPEGPE
CCCCCCCCCCCCEEEECCCCCHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCCCC
SDRWVYYPWRRVLVGLPGPRTFRAVRLDRNRNKLTRAEQAALGEMKVGIVGQSVGHAIAH
CCCEEECCHHHEEECCCCCCCEEEEEECCCCHHHHHHHHHHHCCEEEEEECHHHHHHHHH
TLALEGSCGLLRLADFDDIELSNLNRVPGTLFDIGVNKAVVTARRIAELDPYLPVEVMTC
HHEECCCCCEEEECCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHCCCCCCEEEEEE
GVEDGSVDEFLHGLTLVLEECDSLDVKFAVREGARRHRLPLLMDTSDRGLFDVERYDLEP
CCCCCCHHHHHHHHHHHHHHCCCCCEEEHHHCCHHHCCCCEEEECCCCCCEEHHHCCCCC
DRPPFHGLLGATTAADLRGLTTKEKAPHVMRILDPGELSARMAASLAEIDETVTTWPQLG
CCCCCHHHHHCCHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCC
GDVQLGAAIAATAVRRIGLGLKLSSGRTRVDLERALDGLAEPAPVEDLVWDDGPEPGLLP
CCEEHHHHHHHHHHHHHCCCEEECCCCCEEEHHHHHHHCCCCCCCHHHCCCCCCCCCCCC
PGPPRAKVAGTAQRAPSGGNVQPWTLHLTDEELRIALDPGRSSAMDIGYRGSAVAIGAAL
CCCCCCCCCCCHHCCCCCCCCCCEEEEEECCCEEEEECCCCCCCEECCCCCCCEEEHHHH
HNARAAAAAHGLLGEHRLIEDESAPLTAVLRFGAGSDQLLARDYPAALTRATNRRLGTGA
HHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHCCCCHHHHHHHCCCCCCCC
PIRDGVLAALAAAARAAGGRLHTLTDRAALAEAAELLGGSDRARFLTPRLHQEMFEELRG
CCHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHCCCCCCHHCCHHHHHHHHHHHCC
PGEDLRDGIDLRSMELAPDEHAKLRIAARSDVMDRLREWSGGRALGELTRDRVLSSSALV
CCHHHHCCCCCEEEECCCCCCCEEEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEE
AVTLPCEGGRDAASLSDYARAGAALERVWLEAGRRGLAVQPVSPVFLYAHRAEELTAISE
EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEHHHHHHHHHHH
DFADTLTSLQGRFLDLLGVPGHEIMALVLRLSYAAAATVRSRRLPAPGAGQGS
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]