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The map label for this gene is yciR [C]

Identifier: 54026890

GI number: 54026890

Start: 5132755

End: 5134623

Strand: Reverse

Name: yciR [C]

Synonym: nfa49160

Alternate gene names: 54026890

Gene position: 5134623-5132755 (Counterclockwise)

Preceding gene: 54026891

Following gene: 54026889

Centisome position: 85.28

GC content: 69.82

Gene sequence:

>1869_bases
GTGCCTCGGCGAACGCTCGACTCACTGGTGACGCAAGTCGCCTCCGAGTTGATGGGCGTCGACGCCACCACCATGGTGGC
GTCGAGCGAACGGGTGCTGGCCAAGCTGGTCGAGCATTTCGACGTCGACTTCAGCTACCTGCGCCACACCAACCGGGAGA
ACCGCACCACCGTGCTGGTCGCCGAATGGCCGCACCGCGCCGACGTCCCCGACCCCGATCCGCTGCGCGTGGTCCGCTTC
GCCGACGCCGACTCGGTCTTCCGGGAACTCGAGCACGCCACCGAGCCGATCATCGTCCGGCCCGGCCACGATTCGGCCGA
CTACCAGGAGACCATCCGTAAATCCTCGGGAATTCCGAAGGTGGCGATGGCCTGCGTGCCGCTGGTCTCGCGCGGGGAGT
CCACCGGCGTGCTCGGCTTCATCAAGGAGGGCGACCGCAGCTGGAGCACCCGCGAACTCAACGTGCTCAAGGCCATCGCC
GCGCTGTTCGCCCAGGTGCAGGCCAGGGTGGTGGCCGAGGAACGGTTGCGCTACATCGCGCTGCACGACGACCTCACCGG
CCTGGCCAACCGCCGGGCCCTGCTCGAATACATGGAGGACCGGCTGCGGCCCGGCAGCCCCGGCCCGGTGGCCGCGTTCT
TCCTCGACCTGGACCGGCTCAAGGCCCTCAACGACTTCCTCGGTCACACCGCGGGCGACAACTTCATCCGCACGCTGTCC
TCCCGGCTGCGCGAGAACCTGGACCCCAACGACATGATCGCCCGGCTCGGCGGCGACGAATTCGTCATCGTGCCCGCCAA
GCCGATGGACGCCGTCGCGGCCGAACTCGAGGCCACCCGGTTGCAGCAGTTGATCGGGCGGCGCGTGACCGTCGGCGGGG
AATCGGTCAGCCGCGGCGCGAGTGTCGGTGTCGCCGTGGGCATTCCGGGGCAGACGACGGTGGCCGACGTGCTGCGCCGC
GCCGACCACGCGCTGCTGTCGGCCAAATCCGGCGGCGGCAACGGCGTCGCGGTGTTCACCGACGCGATGCGGGCCCAGTT
CGAACTCCAAGACGACGTGGAGCTGAACCTGCGCGGCGCGGTGTCCGACGGCTCCCTGCTGCTGCACTACCAGCCCGAGG
TGGATCTGCGCACCGGCCGGATCGTGGCGCTCGAGGCGCTGGTGCGCTGGATGCACCCCACCCGGGGCATGCTGCCGCCC
GCCGCGTTCGTCACCGTCGCCGAGGCCACCAACCTGGCCGGGGAACTGGGCCGCTGGGTGATCCGCACCGCCTGCGCCCA
GTTCGCGGAATGGCGCAGGCGTGGGCTGGCCGCCAACACCGTGATGCGGATCAACGTCTCACCGGTGCAGCTGGTGAGCC
TGGATTTCGTCGAGCGGATCGAGGACATCCTGCGGTTGTTCGGCATCGACGGCAGCTCGGTCTGCCTGGAGATCACCGAA
CACGTCGTTGTGCAGGATCTCGCGCGCACCCAGGTCACCCTGCGCGGACTCAAGCGGATGGGGGTGCAGATCGCCATCGA
CGACTTCGGCACCGGCTACAGCTCGCTCTCCCACCTCAAGGCGCTGCCGGTCGACGCGGTGAAGATCGACCGCGGATTCG
TGCAGCGGCTCGGCGCCAGCACCGACGACCTGGCCATCGTGAAGTCCATCATCGGCCTGGCCGGCTCGTTCGGTCTCGGT
GTGGTCGGCGAGGGCGTGGAGACCGCCGTCGCGGCCCGCACCCTGGTCGGCCTGGGTTGCTATCGCGCCCAAGGGTTCCT
CATCGCCCGCCCCATGCCCGCCGACGAAGTGGAGGCGCATCTGGTGACCGGGCGCATCCCGCTCGACCTCGACCTGCCGC
GCGCGGTCCGCGGCGTCGCCAAGCGCTGA

Upstream 100 bases:

>100_bases
TTGGTGCTTCGTCTGAGCTACGCGGCAGCAGCCACGGTCCGCAGCAGGCGGTTACCAGCGCCGGGTGCGGGCCAGGGCAG
CTAGCACGATCGGAGACAAG

Downstream 100 bases:

>100_bases
CCGCCGCTTCCCGCGTTCTTTCCCGACTGTTCACCGCGCGTTGCCCGGCTGGGTTCCGGTGCCCGCCACCATCGGCGGAG
TGCGCATCGTGCAGCTGGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 622; Mature: 621

Protein sequence:

>622_residues
MPRRTLDSLVTQVASELMGVDATTMVASSERVLAKLVEHFDVDFSYLRHTNRENRTTVLVAEWPHRADVPDPDPLRVVRF
ADADSVFRELEHATEPIIVRPGHDSADYQETIRKSSGIPKVAMACVPLVSRGESTGVLGFIKEGDRSWSTRELNVLKAIA
ALFAQVQARVVAEERLRYIALHDDLTGLANRRALLEYMEDRLRPGSPGPVAAFFLDLDRLKALNDFLGHTAGDNFIRTLS
SRLRENLDPNDMIARLGGDEFVIVPAKPMDAVAAELEATRLQQLIGRRVTVGGESVSRGASVGVAVGIPGQTTVADVLRR
ADHALLSAKSGGGNGVAVFTDAMRAQFELQDDVELNLRGAVSDGSLLLHYQPEVDLRTGRIVALEALVRWMHPTRGMLPP
AAFVTVAEATNLAGELGRWVIRTACAQFAEWRRRGLAANTVMRINVSPVQLVSLDFVERIEDILRLFGIDGSSVCLEITE
HVVVQDLARTQVTLRGLKRMGVQIAIDDFGTGYSSLSHLKALPVDAVKIDRGFVQRLGASTDDLAIVKSIIGLAGSFGLG
VVGEGVETAVAARTLVGLGCYRAQGFLIARPMPADEVEAHLVTGRIPLDLDLPRAVRGVAKR

Sequences:

>Translated_622_residues
MPRRTLDSLVTQVASELMGVDATTMVASSERVLAKLVEHFDVDFSYLRHTNRENRTTVLVAEWPHRADVPDPDPLRVVRF
ADADSVFRELEHATEPIIVRPGHDSADYQETIRKSSGIPKVAMACVPLVSRGESTGVLGFIKEGDRSWSTRELNVLKAIA
ALFAQVQARVVAEERLRYIALHDDLTGLANRRALLEYMEDRLRPGSPGPVAAFFLDLDRLKALNDFLGHTAGDNFIRTLS
SRLRENLDPNDMIARLGGDEFVIVPAKPMDAVAAELEATRLQQLIGRRVTVGGESVSRGASVGVAVGIPGQTTVADVLRR
ADHALLSAKSGGGNGVAVFTDAMRAQFELQDDVELNLRGAVSDGSLLLHYQPEVDLRTGRIVALEALVRWMHPTRGMLPP
AAFVTVAEATNLAGELGRWVIRTACAQFAEWRRRGLAANTVMRINVSPVQLVSLDFVERIEDILRLFGIDGSSVCLEITE
HVVVQDLARTQVTLRGLKRMGVQIAIDDFGTGYSSLSHLKALPVDAVKIDRGFVQRLGASTDDLAIVKSIIGLAGSFGLG
VVGEGVETAVAARTLVGLGCYRAQGFLIARPMPADEVEAHLVTGRIPLDLDLPRAVRGVAKR
>Mature_621_residues
PRRTLDSLVTQVASELMGVDATTMVASSERVLAKLVEHFDVDFSYLRHTNRENRTTVLVAEWPHRADVPDPDPLRVVRFA
DADSVFRELEHATEPIIVRPGHDSADYQETIRKSSGIPKVAMACVPLVSRGESTGVLGFIKEGDRSWSTRELNVLKAIAA
LFAQVQARVVAEERLRYIALHDDLTGLANRRALLEYMEDRLRPGSPGPVAAFFLDLDRLKALNDFLGHTAGDNFIRTLSS
RLRENLDPNDMIARLGGDEFVIVPAKPMDAVAAELEATRLQQLIGRRVTVGGESVSRGASVGVAVGIPGQTTVADVLRRA
DHALLSAKSGGGNGVAVFTDAMRAQFELQDDVELNLRGAVSDGSLLLHYQPEVDLRTGRIVALEALVRWMHPTRGMLPPA
AFVTVAEATNLAGELGRWVIRTACAQFAEWRRRGLAANTVMRINVSPVQLVSLDFVERIEDILRLFGIDGSSVCLEITEH
VVVQDLARTQVTLRGLKRMGVQIAIDDFGTGYSSLSHLKALPVDAVKIDRGFVQRLGASTDDLAIVKSIIGLAGSFGLGV
VGEGVETAVAARTLVGLGCYRAQGFLIARPMPADEVEAHLVTGRIPLDLDLPRAVRGVAKR

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=423, Percent_Identity=34.51536643026, Blast_Score=261, Evalue=6e-71,
Organism=Escherichia coli, GI87081921, Length=496, Percent_Identity=29.6370967741936, Blast_Score=233, Evalue=3e-62,
Organism=Escherichia coli, GI1787055, Length=271, Percent_Identity=36.5313653136531, Blast_Score=176, Evalue=4e-45,
Organism=Escherichia coli, GI226510982, Length=422, Percent_Identity=27.0142180094787, Blast_Score=164, Evalue=2e-41,
Organism=Escherichia coli, GI1788502, Length=237, Percent_Identity=35.0210970464135, Blast_Score=140, Evalue=2e-34,
Organism=Escherichia coli, GI1786507, Length=228, Percent_Identity=33.7719298245614, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI1790496, Length=238, Percent_Identity=31.0924369747899, Blast_Score=130, Evalue=3e-31,
Organism=Escherichia coli, GI87081743, Length=249, Percent_Identity=31.3253012048193, Blast_Score=127, Evalue=3e-30,
Organism=Escherichia coli, GI1788849, Length=254, Percent_Identity=32.6771653543307, Blast_Score=122, Evalue=7e-29,
Organism=Escherichia coli, GI87081845, Length=236, Percent_Identity=31.7796610169492, Blast_Score=112, Evalue=7e-26,
Organism=Escherichia coli, GI87082096, Length=431, Percent_Identity=27.6102088167053, Blast_Score=112, Evalue=7e-26,
Organism=Escherichia coli, GI87081980, Length=272, Percent_Identity=29.4117647058824, Blast_Score=105, Evalue=8e-24,
Organism=Escherichia coli, GI1788381, Length=431, Percent_Identity=25.2900232018561, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI87081977, Length=208, Percent_Identity=32.6923076923077, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI87081881, Length=174, Percent_Identity=32.183908045977, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI145693134, Length=185, Percent_Identity=31.3513513513514, Blast_Score=77, Evalue=4e-15,
Organism=Escherichia coli, GI1789650, Length=479, Percent_Identity=23.7995824634656, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI1787816, Length=153, Percent_Identity=32.6797385620915, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1787262, Length=163, Percent_Identity=28.8343558282209, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI87081974, Length=203, Percent_Identity=28.0788177339901, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI87082007, Length=175, Percent_Identity=31.4285714285714, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI1786584, Length=168, Percent_Identity=31.547619047619, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1788085, Length=166, Percent_Identity=25.9036144578313, Blast_Score=62, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 67604; Mature: 67472

Theoretical pI: Translated: 6.46; Mature: 6.46

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRRTLDSLVTQVASELMGVDATTMVASSERVLAKLVEHFDVDFSYLRHTNRENRTTVLV
CCCHHHHHHHHHHHHHHHCCCHHHHHHCHHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEE
AEWPHRADVPDPDPLRVVRFADADSVFRELEHATEPIIVRPGHDSADYQETIRKSSGIPK
EECCCCCCCCCCCCEEEEEECCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCCH
VAMACVPLVSRGESTGVLGFIKEGDRSWSTRELNVLKAIAALFAQVQARVVAEERLRYIA
HHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE
LHDDLTGLANRRALLEYMEDRLRPGSPGPVAAFFLDLDRLKALNDFLGHTAGDNFIRTLS
EECCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
SRLRENLDPNDMIARLGGDEFVIVPAKPMDAVAAELEATRLQQLIGRRVTVGGESVSRGA
HHHHCCCCHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCEEEECCCHHCCCC
SVGVAVGIPGQTTVADVLRRADHALLSAKSGGGNGVAVFTDAMRAQFELQDDVELNLRGA
CCEEEEECCCCHHHHHHHHHHHHHHEEECCCCCCEEEEEEHHHHHHCCCCCCCEEEEEEE
VSDGSLLLHYQPEVDLRTGRIVALEALVRWMHPTRGMLPPAAFVTVAEATNLAGELGRWV
ECCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
IRTACAQFAEWRRRGLAANTVMRINVSPVQLVSLDFVERIEDILRLFGIDGSSVCLEITE
HHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
HVVVQDLARTQVTLRGLKRMGVQIAIDDFGTGYSSLSHLKALPVDAVKIDRGFVQRLGAS
HHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCC
TDDLAIVKSIIGLAGSFGLGVVGEGVETAVAARTLVGLGCYRAQGFLIARPMPADEVEAH
CCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEECCCCHHHHCEE
LVTGRIPLDLDLPRAVRGVAKR
EEECCCCCCCCCHHHHHHHCCC
>Mature Secondary Structure 
PRRTLDSLVTQVASELMGVDATTMVASSERVLAKLVEHFDVDFSYLRHTNRENRTTVLV
CCHHHHHHHHHHHHHHHCCCHHHHHHCHHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEE
AEWPHRADVPDPDPLRVVRFADADSVFRELEHATEPIIVRPGHDSADYQETIRKSSGIPK
EECCCCCCCCCCCCEEEEEECCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCCH
VAMACVPLVSRGESTGVLGFIKEGDRSWSTRELNVLKAIAALFAQVQARVVAEERLRYIA
HHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE
LHDDLTGLANRRALLEYMEDRLRPGSPGPVAAFFLDLDRLKALNDFLGHTAGDNFIRTLS
EECCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
SRLRENLDPNDMIARLGGDEFVIVPAKPMDAVAAELEATRLQQLIGRRVTVGGESVSRGA
HHHHCCCCHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCEEEECCCHHCCCC
SVGVAVGIPGQTTVADVLRRADHALLSAKSGGGNGVAVFTDAMRAQFELQDDVELNLRGA
CCEEEEECCCCHHHHHHHHHHHHHHEEECCCCCCEEEEEEHHHHHHCCCCCCCEEEEEEE
VSDGSLLLHYQPEVDLRTGRIVALEALVRWMHPTRGMLPPAAFVTVAEATNLAGELGRWV
ECCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
IRTACAQFAEWRRRGLAANTVMRINVSPVQLVSLDFVERIEDILRLFGIDGSSVCLEITE
HHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
HVVVQDLARTQVTLRGLKRMGVQIAIDDFGTGYSSLSHLKALPVDAVKIDRGFVQRLGAS
HHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCC
TDDLAIVKSIIGLAGSFGLGVVGEGVETAVAARTLVGLGCYRAQGFLIARPMPADEVEAH
CCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEECCCCHHHHCEE
LVTGRIPLDLDLPRAVRGVAKR
EEECCCCCCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]