| Definition | Nocardia farcinica IFM 10152 chromosome, complete genome. |
|---|---|
| Accession | NC_006361 |
| Length | 6,021,225 |
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The map label for this gene is 54026781
Identifier: 54026781
GI number: 54026781
Start: 5021079
End: 5023007
Strand: Reverse
Name: 54026781
Synonym: nfa48070
Alternate gene names: NA
Gene position: 5023007-5021079 (Counterclockwise)
Preceding gene: 54026783
Following gene: 54026780
Centisome position: 83.42
GC content: 74.55
Gene sequence:
>1929_bases ATGGGCACGGCAGGTTTCGCGGGGGCGGAGAACCCGCACAGTTTCACCCACGCTCGGATCAGGACGGCGGCCGGCCGGCT ACGGCCCGCGGAGGTGGCGCACGCGGCCGACACCTGGTCCGGGGTGGCAGCGCTGGTCGCCACGGCGGCGGACCGACTCG CCGGGGTCGCGCGCCGGGTGTTCACGGATCACTGGGAGGGCGCCGCCGCGGCGGCGGCGCGCCGGTGGATGCACGACTAT CTCGCCCGGCTCGACGCACTGGTCACAGCGGTGGGGGCGCAATCGGAGGCGGTCCGGGCCGCGTCCGAGGCAGCCGCCCG CTTCCGCGCGGCGATACCCGAGGTCGGTGGTGACAGCGCAGGCGCGCGGGAGCGTCAGCGTGTGGAGGAACAGGCGCGGA TCGACATGGGGGAGTTGTATGTGCGGGCGTACGCGGAGATCGCGAGGTCGTTTCCGGAACTGCCGATGACCGAGACCGGC GAGGTTGCCGGGGTAGGCGCGTCTCACGCAGAGGGTGTCGGTGCATTCTTCCCGGGAGGAATCGGGGTTGTTGCGGCCGG TGAGTTGCCCATCGCGGGCGGTTCGAGCGCCGCCGCTACGGATGGTCCGGGCACCGGTGCGCGCGACGGTGGCGTGGAGG ATCGTCCGGCCCCGGGGAGAGGTGGGGGTGCGGCATCCCCCGGACTGGTGACAGATCGAGGTGTCTTGTCGGGTGGGGTG TCGGATCGGGCCGGCTCGCCGGGACGGGTGTGGGGCCTGGATGCGCAATCGGGTGCGGTGTCGGGCCAGGTTGCGCGGCT GGGTGTGGTGTCGGACGAGGTTGTGCAGTCGGGTGTGGTGTCGGACGGGGTTGCGCGGCCGGGCGTGGTCTCGGACCCGG TCGCGTCGCCCGACCGGGTGCCGGATCGCGTTCCAACGGGGCAGGAACTGACGGCCTCCGGTTCGGTGCAGGGTGGCGGC GCCCCGGCGGGAGAGTGGGCCGACGCAACCCGTCCGACCGTGGCGGGCACCCTGGCCCACCACGGCGAGGTCGTCGACGG GTCACCCTGTCCTGTCCGCCCCGGCGAGGGCGCACTTGTCCTCGATGCCGATCGGGCCGGGGCCGCGCCGGGCGCGGTAG CGGCGGCGGGCACATCCGCCGCCGCCGTGGCCGGCCTGCCCGCCCTGCCGACTGGTCCCACTGTCCCTGCTGTGCCCGGC CTGCCCGCTGTGCCCAATGTGCCTTTGGTGCCCGCCCGACCCGCTGTGTCTGCGATGCCAGCCGTGGCCGGCCCACCCGC TGTGCCTGCGATGCCAGCTGTGCCCGGCCTGCCCGCTGTGCCTGCGATGCCCGCGGTACCCGCCGTGGCCGGCCTGCCCC CTGTGCTCGGCGTCCCTGCTGTGTCCGCCGTCCCCGCGAGTTCCGGTGACCCCGCGAATTCCGGTGTCCCGCCCACCGCC CCTGGTGCCACGGATGCGCCATCGGGTGCACCCATGCCGGTTCCTGCCCATCCCACCGACGCGTCCGACGCCCGCCGGCA GAATGCCACCACCCCGCCCCGCCCTCCGGCCGCCGACCACCCCCTCCACACCGGTGTCCTGACGTTCCCGCCGCCCGCGG ACCAGTCCCGGGCGGACCGCCGGCTACCCGACTACCTGCGAACCACCGACCACGGGACCGAACTTCTCGGCAAACCGAGA AAGGTGTTGCCCCCGGCGCTGGGAGCCGACGACGCACCGCCGCCGCCTCGACCCCACCGCCGGACCCCGCCCTGCCCGGC GCCCCCGACCCGTACCGGCAACGTCGGCCTCACCCTCCCACCGGTCCGCCGCCACCGCTCGCACCCTGCCTCCGGGTCCC ACCGCAACCGCCACGGAAAGGAACTACTCGGAGACCCGCCGGCCACGGTCCCGCCGGTTATCGGTGAGGACAACGCCGGG GGCCGGTGA
Upstream 100 bases:
>100_bases GACGCGGTGTTCCGGCAGGTTCCGCCGCCGGAAAATCCGCGGGAACCGTCGGGCGGCATGTCGCGTCTATATCGATCAAC TGCGACGCGAGGGGGACGCG
Downstream 100 bases:
>100_bases TGTGGTGCTCTGTCTGCCGGTGTCACAGGCGCACGGACCGTTCCAGCCCTGTCGCCCGCGCCGACCAGCGAGCGACCATC GCGGCCATTCGAGGTCGCCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 642; Mature: 641
Protein sequence:
>642_residues MGTAGFAGAENPHSFTHARIRTAAGRLRPAEVAHAADTWSGVAALVATAADRLAGVARRVFTDHWEGAAAAAARRWMHDY LARLDALVTAVGAQSEAVRAASEAAARFRAAIPEVGGDSAGARERQRVEEQARIDMGELYVRAYAEIARSFPELPMTETG EVAGVGASHAEGVGAFFPGGIGVVAAGELPIAGGSSAAATDGPGTGARDGGVEDRPAPGRGGGAASPGLVTDRGVLSGGV SDRAGSPGRVWGLDAQSGAVSGQVARLGVVSDEVVQSGVVSDGVARPGVVSDPVASPDRVPDRVPTGQELTASGSVQGGG APAGEWADATRPTVAGTLAHHGEVVDGSPCPVRPGEGALVLDADRAGAAPGAVAAAGTSAAAVAGLPALPTGPTVPAVPG LPAVPNVPLVPARPAVSAMPAVAGPPAVPAMPAVPGLPAVPAMPAVPAVAGLPPVLGVPAVSAVPASSGDPANSGVPPTA PGATDAPSGAPMPVPAHPTDASDARRQNATTPPRPPAADHPLHTGVLTFPPPADQSRADRRLPDYLRTTDHGTELLGKPR KVLPPALGADDAPPPPRPHRRTPPCPAPPTRTGNVGLTLPPVRRHRSHPASGSHRNRHGKELLGDPPATVPPVIGEDNAG GR
Sequences:
>Translated_642_residues MGTAGFAGAENPHSFTHARIRTAAGRLRPAEVAHAADTWSGVAALVATAADRLAGVARRVFTDHWEGAAAAAARRWMHDY LARLDALVTAVGAQSEAVRAASEAAARFRAAIPEVGGDSAGARERQRVEEQARIDMGELYVRAYAEIARSFPELPMTETG EVAGVGASHAEGVGAFFPGGIGVVAAGELPIAGGSSAAATDGPGTGARDGGVEDRPAPGRGGGAASPGLVTDRGVLSGGV SDRAGSPGRVWGLDAQSGAVSGQVARLGVVSDEVVQSGVVSDGVARPGVVSDPVASPDRVPDRVPTGQELTASGSVQGGG APAGEWADATRPTVAGTLAHHGEVVDGSPCPVRPGEGALVLDADRAGAAPGAVAAAGTSAAAVAGLPALPTGPTVPAVPG LPAVPNVPLVPARPAVSAMPAVAGPPAVPAMPAVPGLPAVPAMPAVPAVAGLPPVLGVPAVSAVPASSGDPANSGVPPTA PGATDAPSGAPMPVPAHPTDASDARRQNATTPPRPPAADHPLHTGVLTFPPPADQSRADRRLPDYLRTTDHGTELLGKPR KVLPPALGADDAPPPPRPHRRTPPCPAPPTRTGNVGLTLPPVRRHRSHPASGSHRNRHGKELLGDPPATVPPVIGEDNAG GR >Mature_641_residues GTAGFAGAENPHSFTHARIRTAAGRLRPAEVAHAADTWSGVAALVATAADRLAGVARRVFTDHWEGAAAAAARRWMHDYL ARLDALVTAVGAQSEAVRAASEAAARFRAAIPEVGGDSAGARERQRVEEQARIDMGELYVRAYAEIARSFPELPMTETGE VAGVGASHAEGVGAFFPGGIGVVAAGELPIAGGSSAAATDGPGTGARDGGVEDRPAPGRGGGAASPGLVTDRGVLSGGVS DRAGSPGRVWGLDAQSGAVSGQVARLGVVSDEVVQSGVVSDGVARPGVVSDPVASPDRVPDRVPTGQELTASGSVQGGGA PAGEWADATRPTVAGTLAHHGEVVDGSPCPVRPGEGALVLDADRAGAAPGAVAAAGTSAAAVAGLPALPTGPTVPAVPGL PAVPNVPLVPARPAVSAMPAVAGPPAVPAMPAVPGLPAVPAMPAVPAVAGLPPVLGVPAVSAVPASSGDPANSGVPPTAP GATDAPSGAPMPVPAHPTDASDARRQNATTPPRPPAADHPLHTGVLTFPPPADQSRADRRLPDYLRTTDHGTELLGKPRK VLPPALGADDAPPPPRPHRRTPPCPAPPTRTGNVGLTLPPVRRHRSHPASGSHRNRHGKELLGDPPATVPPVIGEDNAGG R
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 63610; Mature: 63478
Theoretical pI: Translated: 6.77; Mature: 6.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGTAGFAGAENPHSFTHARIRTAAGRLRPAEVAHAADTWSGVAALVATAADRLAGVARRV CCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FTDHWEGAAAAAARRWMHDYLARLDALVTAVGAQSEAVRAASEAAARFRAAIPEVGGDSA HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCC GARERQRVEEQARIDMGELYVRAYAEIARSFPELPMTETGEVAGVGASHAEGVGAFFPGG CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCHHHCCCCCCCCCC IGVVAAGELPIAGGSSAAATDGPGTGARDGGVEDRPAPGRGGGAASPGLVTDRGVLSGGV CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHCCCC SDRAGSPGRVWGLDAQSGAVSGQVARLGVVSDEVVQSGVVSDGVARPGVVSDPVASPDRV CCCCCCCCCEEECCCCCCCCCCCHHEECCHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCC PDRVPTGQELTASGSVQGGGAPAGEWADATRPTVAGTLAHHGEVVDGSPCPVRPGEGALV CCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCEEECCCCCCCCCCCCEEE LDADRAGAAPGAVAAAGTSAAAVAGLPALPTGPTVPAVPGLPAVPNVPLVPARPAVSAMP EECCCCCCCCCCHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCC AVAGPPAVPAMPAVPGLPAVPAMPAVPAVAGLPPVLGVPAVSAVPASSGDPANSGVPPTA CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHCCCCHHCCCCCCCCCCCCCCCCCC PGATDAPSGAPMPVPAHPTDASDARRQNATTPPRPPAADHPLHTGVLTFPPPADQSRADR CCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHH RLPDYLRTTDHGTELLGKPRKVLPPALGADDAPPPPRPHRRTPPCPAPPTRTGNVGLTLP HCHHHHHHCCCCHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECC PVRRHRSHPASGSHRNRHGKELLGDPPATVPPVIGEDNAGGR HHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure GTAGFAGAENPHSFTHARIRTAAGRLRPAEVAHAADTWSGVAALVATAADRLAGVARRV CCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FTDHWEGAAAAAARRWMHDYLARLDALVTAVGAQSEAVRAASEAAARFRAAIPEVGGDSA HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCC GARERQRVEEQARIDMGELYVRAYAEIARSFPELPMTETGEVAGVGASHAEGVGAFFPGG CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCHHHCCCCCCCCCC IGVVAAGELPIAGGSSAAATDGPGTGARDGGVEDRPAPGRGGGAASPGLVTDRGVLSGGV CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHCCCC SDRAGSPGRVWGLDAQSGAVSGQVARLGVVSDEVVQSGVVSDGVARPGVVSDPVASPDRV CCCCCCCCCEEECCCCCCCCCCCHHEECCHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCC PDRVPTGQELTASGSVQGGGAPAGEWADATRPTVAGTLAHHGEVVDGSPCPVRPGEGALV CCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCEEECCCCCCCCCCCCEEE LDADRAGAAPGAVAAAGTSAAAVAGLPALPTGPTVPAVPGLPAVPNVPLVPARPAVSAMP EECCCCCCCCCCHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCC AVAGPPAVPAMPAVPGLPAVPAMPAVPAVAGLPPVLGVPAVSAVPASSGDPANSGVPPTA CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHCCCCHHCCCCCCCCCCCCCCCCCC PGATDAPSGAPMPVPAHPTDASDARRQNATTPPRPPAADHPLHTGVLTFPPPADQSRADR CCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHH RLPDYLRTTDHGTELLGKPRKVLPPALGADDAPPPPRPHRRTPPCPAPPTRTGNVGLTLP HCHHHHHHCCCCHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECC PVRRHRSHPASGSHRNRHGKELLGDPPATVPPVIGEDNAGGR HHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA