Definition Nocardia farcinica IFM 10152 chromosome, complete genome.
Accession NC_006361
Length 6,021,225

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The map label for this gene is 54026496

Identifier: 54026496

GI number: 54026496

Start: 4691576

End: 4693378

Strand: Reverse

Name: 54026496

Synonym: nfa45230

Alternate gene names: NA

Gene position: 4693378-4691576 (Counterclockwise)

Preceding gene: 54026497

Following gene: 54026492

Centisome position: 77.95

GC content: 66.72

Gene sequence:

>1803_bases
TTGTGGGGTAGCCGAATCAGTCATTCGATCGGGACGCTCGCCCTGGTGGTGAGTTGCGTGGCGTTCGGCGGCGATGAACA
CGCCGCGGCGATCGACCATACGTACGCTGCTGCCTCGTCCTCGGAACTGTTGGTGGTCCGTGGTGCCGAGATCGTCGCGC
GGGCGTCGATCAGCCCGCTGCCCTGGGGCGGTAAGACCGTGATGACCAACGACCGCCGCCACTACGCCCGGCTGTCGGCT
GTACCCGGCACGGCGGAACAGGACGAAGACGGTCAGGTGGAGTTGATCACCGTATCGGTGGCCGACGGGCGTGTGGTGCG
GCGTGAGTGCCCCGGATGCACCTCTGCCGCCGCCATCGGCCCCACCGAGGTGGTGGTGACCTCCACCCTCGGGGGCGGGC
TCTTCGACACCGTCGGTGCGCTGCTGGTCTTCGATGCCGCGACCGAGGACGCGCCGAGTCGACTGACTCCTCGTCCACCG
GGAGTGAACCGCGTACAGCAGGCCACAGAGTTCGTGGCAGCCATGGGCCTTGTGGCCGGCTCGGACGAGGCCGCGTTCGC
CATCGGCTACGACCAGGCGGCGACGATGGCCGGGATGTACCGGCTCGACCGCTTCGGCGGTGTGCGCTTCGAGGGGTTGC
GACGGTACTACGGCTTTCGTGACGAAGACGGCAGGCGCTGGGGCCTGGTCGATACCACGGCCGCTCCGGTCGTACTCGCG
GAATCCCCGGTGATGGGCATGGCGTTCGCCTCGACCTACGAAGCCGACGAACCCGCGAGAGAGGATGAACCGCCGACCGA
CAATGTCGGCTGCACACGGCACACCCTCATCGACATCGTGGATGGAACCGGCGACGTGCGAACTCTGCGAATCGACGATG
CAGTTCGCGCCGCGGGGATGGACCCGTCGTCGGTGGGGACGGTGATCAGCAGGCTCTGGCAGAGCCCGGACGGCATTTTG
CGCGGTGTCGTGCGGGTCCGCGGTTGTGATCCGAAGGCCGATGCCCCTAGCTATTGGGACCTCGTGGTCGACGGTCGAGG
CGTGCGTCTGTTGGGGCAGCGACAGCCAGTCTCGCGATTCGGCTCGGGCGCGGCTGCGGTGACCGTGTCGGAGGGATTCG
TCCAGGGGGAGCGGCCCTTCGCGGTACGCACCGGTGACGAAGCCGAGTGGGGTGAGTTCCTGGAAATCACAGGAACCGCG
ATGGGGCTCCGGGAGACATCGCCGTTGAACCGGGCCTTGCCACTACCCGAGACCGTGGGCGACCGCACTCGCCTGTCGAC
CGTTCGTCCTGTCGACAACACTCGAAAACTGCGGGCGGAGTACGACGTTCAGCGCAGGATCGACGGCGCGTGCCGAGATT
CCCGGCACAGGGTGGCGCGCGTACTGCTGGAGTGCACGACCGCGGAGGGCACCCACGAGCTGTGCTGGGCGGGACAGCCC
TCGAACACCGCGTACTGTCTCGATGACGTGACCGGCAGGTCGGTCGTCGAGGTTCGCTCGCGCTCCGGTAGAGGTGTCGG
TGTCGTCGGCGCGTCCGACGTGGTCGGGGACGGTGTGGTACGGATTCCGCTGGCGCTTCGGCTGATCGATGGCCGAACCT
GTGCACTCGACAGCCACGTACCACCCGACGCGCACGACCACACCTACACGTGCATAGATGGTTCACAGGTGCTCGACAAT
CAGAACTCCGGTCCCACCGCATTCGTCGCCGACGGCACTCTGTTCACGGCCTCCCATCGTGCGCTCGACGGCACCCTGAC
CGACATCCCGATCACCGAACTGTTTCTGGTCCAATCGAATTGA

Upstream 100 bases:

>100_bases
GTCGAACTTGTGACCGAACCGTTCCGTCCGGTGGAGCGGGTCCCACCATTCGTGCGCGAGGATCCAGCGGCCTTGGCCGC
CGAATGTCCAGGGAGCTGAG

Downstream 100 bases:

>100_bases
GAGTGGGCAAAGCGAACGGCGCCGTCGTCCCTCGGGACGGCGGCGCCGTTGTCGTCGGTGCGACCGATGCGTCAGCGACC
CAGCGAGTCGATGAGCACGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 600; Mature: 600

Protein sequence:

>600_residues
MWGSRISHSIGTLALVVSCVAFGGDEHAAAIDHTYAAASSSELLVVRGAEIVARASISPLPWGGKTVMTNDRRHYARLSA
VPGTAEQDEDGQVELITVSVADGRVVRRECPGCTSAAAIGPTEVVVTSTLGGGLFDTVGALLVFDAATEDAPSRLTPRPP
GVNRVQQATEFVAAMGLVAGSDEAAFAIGYDQAATMAGMYRLDRFGGVRFEGLRRYYGFRDEDGRRWGLVDTTAAPVVLA
ESPVMGMAFASTYEADEPAREDEPPTDNVGCTRHTLIDIVDGTGDVRTLRIDDAVRAAGMDPSSVGTVISRLWQSPDGIL
RGVVRVRGCDPKADAPSYWDLVVDGRGVRLLGQRQPVSRFGSGAAAVTVSEGFVQGERPFAVRTGDEAEWGEFLEITGTA
MGLRETSPLNRALPLPETVGDRTRLSTVRPVDNTRKLRAEYDVQRRIDGACRDSRHRVARVLLECTTAEGTHELCWAGQP
SNTAYCLDDVTGRSVVEVRSRSGRGVGVVGASDVVGDGVVRIPLALRLIDGRTCALDSHVPPDAHDHTYTCIDGSQVLDN
QNSGPTAFVADGTLFTASHRALDGTLTDIPITELFLVQSN

Sequences:

>Translated_600_residues
MWGSRISHSIGTLALVVSCVAFGGDEHAAAIDHTYAAASSSELLVVRGAEIVARASISPLPWGGKTVMTNDRRHYARLSA
VPGTAEQDEDGQVELITVSVADGRVVRRECPGCTSAAAIGPTEVVVTSTLGGGLFDTVGALLVFDAATEDAPSRLTPRPP
GVNRVQQATEFVAAMGLVAGSDEAAFAIGYDQAATMAGMYRLDRFGGVRFEGLRRYYGFRDEDGRRWGLVDTTAAPVVLA
ESPVMGMAFASTYEADEPAREDEPPTDNVGCTRHTLIDIVDGTGDVRTLRIDDAVRAAGMDPSSVGTVISRLWQSPDGIL
RGVVRVRGCDPKADAPSYWDLVVDGRGVRLLGQRQPVSRFGSGAAAVTVSEGFVQGERPFAVRTGDEAEWGEFLEITGTA
MGLRETSPLNRALPLPETVGDRTRLSTVRPVDNTRKLRAEYDVQRRIDGACRDSRHRVARVLLECTTAEGTHELCWAGQP
SNTAYCLDDVTGRSVVEVRSRSGRGVGVVGASDVVGDGVVRIPLALRLIDGRTCALDSHVPPDAHDHTYTCIDGSQVLDN
QNSGPTAFVADGTLFTASHRALDGTLTDIPITELFLVQSN
>Mature_600_residues
MWGSRISHSIGTLALVVSCVAFGGDEHAAAIDHTYAAASSSELLVVRGAEIVARASISPLPWGGKTVMTNDRRHYARLSA
VPGTAEQDEDGQVELITVSVADGRVVRRECPGCTSAAAIGPTEVVVTSTLGGGLFDTVGALLVFDAATEDAPSRLTPRPP
GVNRVQQATEFVAAMGLVAGSDEAAFAIGYDQAATMAGMYRLDRFGGVRFEGLRRYYGFRDEDGRRWGLVDTTAAPVVLA
ESPVMGMAFASTYEADEPAREDEPPTDNVGCTRHTLIDIVDGTGDVRTLRIDDAVRAAGMDPSSVGTVISRLWQSPDGIL
RGVVRVRGCDPKADAPSYWDLVVDGRGVRLLGQRQPVSRFGSGAAAVTVSEGFVQGERPFAVRTGDEAEWGEFLEITGTA
MGLRETSPLNRALPLPETVGDRTRLSTVRPVDNTRKLRAEYDVQRRIDGACRDSRHRVARVLLECTTAEGTHELCWAGQP
SNTAYCLDDVTGRSVVEVRSRSGRGVGVVGASDVVGDGVVRIPLALRLIDGRTCALDSHVPPDAHDHTYTCIDGSQVLDN
QNSGPTAFVADGTLFTASHRALDGTLTDIPITELFLVQSN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 63891; Mature: 63891

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWGSRISHSIGTLALVVSCVAFGGDEHAAAIDHTYAAASSSELLVVRGAEIVARASISPL
CCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCEEEEECCEEEEECCCCCC
PWGGKTVMTNDRRHYARLSAVPGTAEQDEDGQVELITVSVADGRVVRRECPGCTSAAAIG
CCCCEEEEECCCHHHEEEECCCCCCCCCCCCCEEEEEEEECCCEEEHHCCCCCCCCCCCC
PTEVVVTSTLGGGLFDTVGALLVFDAATEDAPSRLTPRPPGVNRVQQATEFVAAMGLVAG
CCEEEEEECCCCHHHHHHHHHEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHEEC
SDEAAFAIGYDQAATMAGMYRLDRFGGVRFEGLRRYYGFRDEDGRRWGLVDTTAAPVVLA
CCCCEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCEECEEECCCCCEEEE
ESPVMGMAFASTYEADEPAREDEPPTDNVGCTRHTLIDIVDGTGDVRTLRIDDAVRAAGM
CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECHHHHHCCC
DPSSVGTVISRLWQSPDGILRGVVRVRGCDPKADAPSYWDLVVDGRGVRLLGQRQPVSRF
CHHHHHHHHHHHHCCCHHHHHHHHHEECCCCCCCCCCEEEEEECCCCEEEECCCCCHHHH
GSGAAAVTVSEGFVQGERPFAVRTGDEAEWGEFLEITGTAMGLRETSPLNRALPLPETVG
CCCEEEEEEECCCCCCCCCEEEECCCCCCCCCEEEEECCEECCCCCCCCCCCCCCCHHCC
DRTRLSTVRPVDNTRKLRAEYDVQRRIDGACRDSRHRVARVLLECTTAEGTHELCWAGQP
CCHHCCEECCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCC
SNTAYCLDDVTGRSVVEVRSRSGRGVGVVGASDVVGDGVVRIPLALRLIDGRTCALDSHV
CCCEEEEECCCCCEEEEHHHCCCCEEEEEECCHHCCCCEEEEEEEEEEECCCEEEECCCC
PPDAHDHTYTCIDGSQVLDNQNSGPTAFVADGTLFTASHRALDGTLTDIPITELFLVQSN
CCCCCCCEEEEECCHHHHCCCCCCCEEEEECCEEEEECCCCCCCCCCCCCEEEEEEEECC
>Mature Secondary Structure
MWGSRISHSIGTLALVVSCVAFGGDEHAAAIDHTYAAASSSELLVVRGAEIVARASISPL
CCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCEEEEECCEEEEECCCCCC
PWGGKTVMTNDRRHYARLSAVPGTAEQDEDGQVELITVSVADGRVVRRECPGCTSAAAIG
CCCCEEEEECCCHHHEEEECCCCCCCCCCCCCEEEEEEEECCCEEEHHCCCCCCCCCCCC
PTEVVVTSTLGGGLFDTVGALLVFDAATEDAPSRLTPRPPGVNRVQQATEFVAAMGLVAG
CCEEEEEECCCCHHHHHHHHHEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHEEC
SDEAAFAIGYDQAATMAGMYRLDRFGGVRFEGLRRYYGFRDEDGRRWGLVDTTAAPVVLA
CCCCEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCEECEEECCCCCEEEE
ESPVMGMAFASTYEADEPAREDEPPTDNVGCTRHTLIDIVDGTGDVRTLRIDDAVRAAGM
CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECHHHHHCCC
DPSSVGTVISRLWQSPDGILRGVVRVRGCDPKADAPSYWDLVVDGRGVRLLGQRQPVSRF
CHHHHHHHHHHHHCCCHHHHHHHHHEECCCCCCCCCCEEEEEECCCCEEEECCCCCHHHH
GSGAAAVTVSEGFVQGERPFAVRTGDEAEWGEFLEITGTAMGLRETSPLNRALPLPETVG
CCCEEEEEEECCCCCCCCCEEEECCCCCCCCCEEEEECCEECCCCCCCCCCCCCCCHHCC
DRTRLSTVRPVDNTRKLRAEYDVQRRIDGACRDSRHRVARVLLECTTAEGTHELCWAGQP
CCHHCCEECCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCC
SNTAYCLDDVTGRSVVEVRSRSGRGVGVVGASDVVGDGVVRIPLALRLIDGRTCALDSHV
CCCEEEEECCCCCEEEEHHHCCCCEEEEEECCHHCCCCEEEEEEEEEEECCCEEEECCCC
PPDAHDHTYTCIDGSQVLDNQNSGPTAFVADGTLFTASHRALDGTLTDIPITELFLVQSN
CCCCCCCEEEEECCHHHHCCCCCCCEEEEECCEEEEECCCCCCCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA