| Definition | Nocardia farcinica IFM 10152 chromosome, complete genome. |
|---|---|
| Accession | NC_006361 |
| Length | 6,021,225 |
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The map label for this gene is 54026130
Identifier: 54026130
GI number: 54026130
Start: 4305448
End: 4306461
Strand: Reverse
Name: 54026130
Synonym: nfa41590
Alternate gene names: NA
Gene position: 4306461-4305448 (Counterclockwise)
Preceding gene: 54026131
Following gene: 54026129
Centisome position: 71.52
GC content: 72.09
Gene sequence:
>1014_bases ATGCGGGATGCCGAAACCCTCTGTGACAGCGGCTGGATCGTGCCGGGCCTGGTCGACGCGCACTGCCACGTCGGCATTCG CTACGGCGGTGGCGACGAGGACCACGACGGCGCGATCGCCCAGGCCGAGATCGAACGCGACGCCGGTGCGCTGCTGCTGC GCGACGCGGGCTCGCCCATCGATACGCGCTTCATCGACGACCACGACGACCTACCCCGCATCATCCGTGCGGGCAGGCAC ATCGCGCGGCCCAAACGCTACATCCGCGAGCTGGGGATCGAGCTCGACGACGAACGGGACCTGCCGCAGATCGTGGCCGA GCAGGCCCGCCGCGGCGACGGCTGGGTCAAGATCGTCGGCGACTGGATCGACCGCGCCGTCGGCGATCTGCGCCCGCTGT GGAGCGATGCCGTCCTGGTCGAGGCGATCGAGGCCGCGCACGCCGAGGGCGCTCGGGTGACCGCGCACGTCTTCGGCGAG GACGCGCTGCCCGGGTTGATCAACGCCGGTATCGACTGTCTCGAGCACGGCACCGGCCTCACCGACGACACCATCGCGAT GATGGTCGAGCACGGCACCGCCCTGGTGCCCACCCTGATCAACATCGACACCTTCCCCGAGATCGCCGACAGCGCGGGCC GCTTCCCCGTCTACGCCGCACACATGCGCGACCTGCACCGTCGCGTGCGCGACACCATCGGCAACGCCCACGACGCCGGC GTGCCGATCTACGCGGGCACCGACGCGGGCGGCTCGATCCGGCACGGCCGCATCGCCGACGAGATCGCCGCGCTCGGCAA GGCCGGGCTGTCGGCGCACGAGGCGCTCGGCGCGGCGTCCTGGGCGGCCCGCGACTGGCTCGGCAGGCCGGGCATCGCGC ACGGGGCGCCCGCCGATTTCGTCGTCTACCGCGACGATCCGCGCGAGCATCCCGATGTGCTCACCGAGCCCGCCTGGGTG GTGCTGCGCGGGCGGGTGGTCAAGTCCGCCGATCCCGTCACCGGACACCGGTGA
Upstream 100 bases:
>100_bases GAGTGAGGGAGGTCCCGCCGTGCATCTTCGTGGATTCGTTCTGCCCGACGACGAGGTTCGTGACCTGTGGGTACACGACG GCCTGGTCTCGTTCGAGCCG
Downstream 100 bases:
>100_bases CCGGCGCGTCGACGAGGTTCCGGCGGAGGCGGGCGGGCGTCGACGGTCCGCCTTCCCCGCGTGGGGGTAGCACCGATCCG AGGAGGAGGTCGCTGTGCGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 337; Mature: 337
Protein sequence:
>337_residues MRDAETLCDSGWIVPGLVDAHCHVGIRYGGGDEDHDGAIAQAEIERDAGALLLRDAGSPIDTRFIDDHDDLPRIIRAGRH IARPKRYIRELGIELDDERDLPQIVAEQARRGDGWVKIVGDWIDRAVGDLRPLWSDAVLVEAIEAAHAEGARVTAHVFGE DALPGLINAGIDCLEHGTGLTDDTIAMMVEHGTALVPTLINIDTFPEIADSAGRFPVYAAHMRDLHRRVRDTIGNAHDAG VPIYAGTDAGGSIRHGRIADEIAALGKAGLSAHEALGAASWAARDWLGRPGIAHGAPADFVVYRDDPREHPDVLTEPAWV VLRGRVVKSADPVTGHR
Sequences:
>Translated_337_residues MRDAETLCDSGWIVPGLVDAHCHVGIRYGGGDEDHDGAIAQAEIERDAGALLLRDAGSPIDTRFIDDHDDLPRIIRAGRH IARPKRYIRELGIELDDERDLPQIVAEQARRGDGWVKIVGDWIDRAVGDLRPLWSDAVLVEAIEAAHAEGARVTAHVFGE DALPGLINAGIDCLEHGTGLTDDTIAMMVEHGTALVPTLINIDTFPEIADSAGRFPVYAAHMRDLHRRVRDTIGNAHDAG VPIYAGTDAGGSIRHGRIADEIAALGKAGLSAHEALGAASWAARDWLGRPGIAHGAPADFVVYRDDPREHPDVLTEPAWV VLRGRVVKSADPVTGHR >Mature_337_residues MRDAETLCDSGWIVPGLVDAHCHVGIRYGGGDEDHDGAIAQAEIERDAGALLLRDAGSPIDTRFIDDHDDLPRIIRAGRH IARPKRYIRELGIELDDERDLPQIVAEQARRGDGWVKIVGDWIDRAVGDLRPLWSDAVLVEAIEAAHAEGARVTAHVFGE DALPGLINAGIDCLEHGTGLTDDTIAMMVEHGTALVPTLINIDTFPEIADSAGRFPVYAAHMRDLHRRVRDTIGNAHDAG VPIYAGTDAGGSIRHGRIADEIAALGKAGLSAHEALGAASWAARDWLGRPGIAHGAPADFVVYRDDPREHPDVLTEPAWV VLRGRVVKSADPVTGHR
Specific function: Unknown
COG id: COG1228
COG function: function code Q; Imidazolonepropionase and related amidohydrolases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To S.coelicolor SCO1861 [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006680 [H]
Pfam domain/function: PF01979 Amidohydro_1 [H]
EC number: NA
Molecular weight: Translated: 36324; Mature: 36324
Theoretical pI: Translated: 4.95; Mature: 4.95
Prosite motif: PS00018 EF_HAND_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRDAETLCDSGWIVPGLVDAHCHVGIRYGGGDEDHDGAIAQAEIERDAGALLLRDAGSPI CCCHHHHHCCCCCCCCEECCCEEEEEEECCCCCCCCCCEEHHHHHCCCCEEEEECCCCCC DTRFIDDHDDLPRIIRAGRHIARPKRYIRELGIELDDERDLPQIVAEQARRGDGWVKIVG CCCCCCCCCCHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEEHH DWIDRAVGDLRPLWSDAVLVEAIEAAHAEGARVTAHVFGEDALPGLINAGIDCLEHGTGL HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCC TDDTIAMMVEHGTALVPTLINIDTFPEIADSAGRFPVYAAHMRDLHRRVRDTIGNAHDAG CHHHHHHHHHCCCCHHHHHHCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC VPIYAGTDAGGSIRHGRIADEIAALGKAGLSAHEALGAASWAARDWLGRPGIAHGAPADF CCEEECCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCE VVYRDDPREHPDVLTEPAWVVLRGRVVKSADPVTGHR EEECCCCCCCCCCCCCCCEEEEECEEECCCCCCCCCC >Mature Secondary Structure MRDAETLCDSGWIVPGLVDAHCHVGIRYGGGDEDHDGAIAQAEIERDAGALLLRDAGSPI CCCHHHHHCCCCCCCCEECCCEEEEEEECCCCCCCCCCEEHHHHHCCCCEEEEECCCCCC DTRFIDDHDDLPRIIRAGRHIARPKRYIRELGIELDDERDLPQIVAEQARRGDGWVKIVG CCCCCCCCCCHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEEHH DWIDRAVGDLRPLWSDAVLVEAIEAAHAEGARVTAHVFGEDALPGLINAGIDCLEHGTGL HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCC TDDTIAMMVEHGTALVPTLINIDTFPEIADSAGRFPVYAAHMRDLHRRVRDTIGNAHDAG CHHHHHHHHHCCCCHHHHHHCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC VPIYAGTDAGGSIRHGRIADEIAALGKAGLSAHEALGAASWAARDWLGRPGIAHGAPADF CCEEECCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCE VVYRDDPREHPDVLTEPAWVVLRGRVVKSADPVTGHR EEECCCCCCCCCCCCCCCEEEEECEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]