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The map label for this gene is yifB [C]

Identifier: 54026113

GI number: 54026113

Start: 4289093

End: 4290601

Strand: Reverse

Name: yifB [C]

Synonym: nfa41420

Alternate gene names: 54026113

Gene position: 4290601-4289093 (Counterclockwise)

Preceding gene: 54026114

Following gene: 54026111

Centisome position: 71.26

GC content: 75.22

Gene sequence:

>1509_bases
ATGGCGCTCGGCCGCGCCCACTCGGTCGCCGTCGCCGGGGTGGACGGCCAGTTGGTGGAGATCGAGGCCGACATCGGCCA
GGGGCTGCCCTCGGTGCATCTGGTGGGCCTGCCCGACACCGCCCTGACGGAATCCCGGGACCGGGTGCGGGCCGCGGTCG
CGAACTCGGGGGAGAAGTGGCCGGACGGCCGGGTCATCCTGGCGCTGTCCCCGGCGACATTGCCCAAGGTGGGCAGCGTC
TACGACCTGGCGCTGGCGGCGGCGGTGCTCGACGCCGCCGACGCGATCCCCTCCACCCGGCTCGGCAAGGCGGTGTTGCT
GGGCGAACTGGCCCTGGACGGACGGGTGCGGCGGGTCCGCGGCATCCTGCCCGCGGTGATGACGGCGCGCGCCGCGGGCT
GGCCCACGGTCGTGGTGCCACGCGCCGCGTTGGCCGAGGCGGGACTGGTGCAGGGCATCGAGGTGCTCGGCGCGGAGACC
CTGCGTGGTCTGGTGGCATGGCTGCGCGGGGAGGGTGGGCTGGCCGAACCCGACGGCGTCCTGCCCGGCGCCGCCGCCCC
CGACGGCGACCTGAGCGAGGTGGTCGGGCAGGAGGAGGCGCGGTGGGCGCTCGAGGTCGCCGCGGCCGGCGGCCACCATC
TGCTCCTCACCGGCCCGCCGGGCATCGGGAAAACGATGCTGGCGCAACGGCTTCCGAGTCTGCTGCCGCCACTCACCGAA
GCGGAGTCGCTGGAGGTGACGGCGATCCACTCGATGGCGGGCGCGTTGTCGGGCGAGCATCCCCTCGTCACCACACCGCC
GTTCGTGGCACCGCACCACTCCACCTCGGTGACCGCGATGATCGGCGGCGGCTCGGGCACGGCACGGCCGGGCGCGGTCA
GCCGGGCGCACCGCGGGGTGCTGTTCCTCGACGAATGCGCCGAGATCGGCACCAAGGTGCTCGAGGCGATGCGTACCCCG
CTCGAGGAGGGTGAGGTGCGCATCGCCCGCCGCGACGGCGTCGCCCGGTATCCCGCGCGCTTCCAGCTGGTACTCGCCGC
CAACCCGTGCCCGTGCGCGCCCGCCCGCGACGTGGACTGCATCTGCCCGCCGCTGGCCCGTCGCCGCTACCTGGGCAAAC
TGTCCGGTCCGCTGATGGACCGCATCGACCTCTGGGTGCGCATGCACGGTCACACCGGGCCCGCGCTGGGCTCCGAGGTC
GCCGAGAGCAGCGCCACGGTGCGGGAGCGGGTCGCCGCCGCCCGCGCCGCGGCGGCGCACCGCTGGCGCGCGGACGGCTG
GCGGACCAACGCCGAAGTGCCGGGACACGTTCTGCGACAGCGTTTTCCGCTGCCCGCCGAGGTGGTCGCCCCGCTGGAGG
CGGCCGTGCGGATGGGCAGGCTGTCCGCGCGCGGCGCCGATCGCGCCATCCGCGTCGCCTGGACGGTGTGCGACCTGCGC
GGCGCTCCCGTCCCCACCGCACGGGACGTGATGCTGGCCTTGAACTTCCGGCAGCGCGGCGCACCGTGA

Upstream 100 bases:

>100_bases
AACAGGACGGGCCCTGGCAACAGATCCGGTTCGACGTGGTCTCGGTGCTGATGACACCCGGGCATCGCCCCGTCATCGAC
CACCTGAAGGCGGTCTTCTG

Downstream 100 bases:

>100_bases
CACGACAGACCCCGGCCGCGGCGGACACGCCGGTCGGCGCACAGGTATTCGACGATTCCCAGGGGGGACAGCAAATGACC
GAGGTAGTGTCCGAGAGGGC

Product: putative magnesium chelatase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 502; Mature: 501

Protein sequence:

>502_residues
MALGRAHSVAVAGVDGQLVEIEADIGQGLPSVHLVGLPDTALTESRDRVRAAVANSGEKWPDGRVILALSPATLPKVGSV
YDLALAAAVLDAADAIPSTRLGKAVLLGELALDGRVRRVRGILPAVMTARAAGWPTVVVPRAALAEAGLVQGIEVLGAET
LRGLVAWLRGEGGLAEPDGVLPGAAAPDGDLSEVVGQEEARWALEVAAAGGHHLLLTGPPGIGKTMLAQRLPSLLPPLTE
AESLEVTAIHSMAGALSGEHPLVTTPPFVAPHHSTSVTAMIGGGSGTARPGAVSRAHRGVLFLDECAEIGTKVLEAMRTP
LEEGEVRIARRDGVARYPARFQLVLAANPCPCAPARDVDCICPPLARRRYLGKLSGPLMDRIDLWVRMHGHTGPALGSEV
AESSATVRERVAAARAAAAHRWRADGWRTNAEVPGHVLRQRFPLPAEVVAPLEAAVRMGRLSARGADRAIRVAWTVCDLR
GAPVPTARDVMLALNFRQRGAP

Sequences:

>Translated_502_residues
MALGRAHSVAVAGVDGQLVEIEADIGQGLPSVHLVGLPDTALTESRDRVRAAVANSGEKWPDGRVILALSPATLPKVGSV
YDLALAAAVLDAADAIPSTRLGKAVLLGELALDGRVRRVRGILPAVMTARAAGWPTVVVPRAALAEAGLVQGIEVLGAET
LRGLVAWLRGEGGLAEPDGVLPGAAAPDGDLSEVVGQEEARWALEVAAAGGHHLLLTGPPGIGKTMLAQRLPSLLPPLTE
AESLEVTAIHSMAGALSGEHPLVTTPPFVAPHHSTSVTAMIGGGSGTARPGAVSRAHRGVLFLDECAEIGTKVLEAMRTP
LEEGEVRIARRDGVARYPARFQLVLAANPCPCAPARDVDCICPPLARRRYLGKLSGPLMDRIDLWVRMHGHTGPALGSEV
AESSATVRERVAAARAAAAHRWRADGWRTNAEVPGHVLRQRFPLPAEVVAPLEAAVRMGRLSARGADRAIRVAWTVCDLR
GAPVPTARDVMLALNFRQRGAP
>Mature_501_residues
ALGRAHSVAVAGVDGQLVEIEADIGQGLPSVHLVGLPDTALTESRDRVRAAVANSGEKWPDGRVILALSPATLPKVGSVY
DLALAAAVLDAADAIPSTRLGKAVLLGELALDGRVRRVRGILPAVMTARAAGWPTVVVPRAALAEAGLVQGIEVLGAETL
RGLVAWLRGEGGLAEPDGVLPGAAAPDGDLSEVVGQEEARWALEVAAAGGHHLLLTGPPGIGKTMLAQRLPSLLPPLTEA
ESLEVTAIHSMAGALSGEHPLVTTPPFVAPHHSTSVTAMIGGGSGTARPGAVSRAHRGVLFLDECAEIGTKVLEAMRTPL
EEGEVRIARRDGVARYPARFQLVLAANPCPCAPARDVDCICPPLARRRYLGKLSGPLMDRIDLWVRMHGHTGPALGSEVA
ESSATVRERVAAARAAAAHRWRADGWRTNAEVPGHVLRQRFPLPAEVVAPLEAAVRMGRLSARGADRAIRVAWTVCDLRG
APVPTARDVMLALNFRQRGAP

Specific function: Unknown

COG id: COG0606

COG function: function code O; Predicted ATPase with chaperone activity

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Mg-chelatase subunits D/I family. ComM subfamily [H]

Homologues:

Organism=Escherichia coli, GI145693202, Length=500, Percent_Identity=39.8, Blast_Score=324, Evalue=9e-90,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR004482
- InterPro:   IPR000523
- InterPro:   IPR008269
- InterPro:   IPR020568 [H]

Pfam domain/function: PF05362 Lon_C; PF01078 Mg_chelatase [H]

EC number: NA

Molecular weight: Translated: 52415; Mature: 52284

Theoretical pI: Translated: 8.18; Mature: 8.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALGRAHSVAVAGVDGQLVEIEADIGQGLPSVHLVGLPDTALTESRDRVRAAVANSGEKW
CCCCCCCEEEEECCCCEEEEEEEHHCCCCCCEEEEECCCHHHHCHHHHHHHHHHCCCCCC
PDGRVILALSPATLPKVGSVYDLALAAAVLDAADAIPSTRLGKAVLLGELALDGRVRRVR
CCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHCCHHHHHHHHHHCCHHHHHH
GILPAVMTARAAGWPTVVVPRAALAEAGLVQGIEVLGAETLRGLVAWLRGEGGLAEPDGV
HHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
LPGAAAPDGDLSEVVGQEEARWALEVAAAGGHHLLLTGPPGIGKTMLAQRLPSLLPPLTE
CCCCCCCCCCHHHHHCCHHHHEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCC
AESLEVTAIHSMAGALSGEHPLVTTPPFVAPHHSTSVTAMIGGGSGTARPGAVSRAHRGV
CCCEEEEHHHHHHHHCCCCCCEEECCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHCCC
LFLDECAEIGTKVLEAMRTPLEEGEVRIARRDGVARYPARFQLVLAANPCPCAPARDVDC
EEHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEECCCEEEEEEECCCCCCCCCCCCCC
ICPPLARRRYLGKLSGPLMDRIDLWVRMHGHTGPALGSEVAESSATVRERVAAARAAAAH
CCCHHHHHHHHHHHCCHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RWRADGWRTNAEVPGHVLRQRFPLPAEVVAPLEAAVRMGRLSARGADRAIRVAWTVCDLR
HHCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECC
GAPVPTARDVMLALNFRQRGAP
CCCCCCHHHEEEEEEHHHCCCC
>Mature Secondary Structure 
ALGRAHSVAVAGVDGQLVEIEADIGQGLPSVHLVGLPDTALTESRDRVRAAVANSGEKW
CCCCCCEEEEECCCCEEEEEEEHHCCCCCCEEEEECCCHHHHCHHHHHHHHHHCCCCCC
PDGRVILALSPATLPKVGSVYDLALAAAVLDAADAIPSTRLGKAVLLGELALDGRVRRVR
CCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHCCHHHHHHHHHHCCHHHHHH
GILPAVMTARAAGWPTVVVPRAALAEAGLVQGIEVLGAETLRGLVAWLRGEGGLAEPDGV
HHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
LPGAAAPDGDLSEVVGQEEARWALEVAAAGGHHLLLTGPPGIGKTMLAQRLPSLLPPLTE
CCCCCCCCCCHHHHHCCHHHHEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCC
AESLEVTAIHSMAGALSGEHPLVTTPPFVAPHHSTSVTAMIGGGSGTARPGAVSRAHRGV
CCCEEEEHHHHHHHHCCCCCCEEECCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHCCC
LFLDECAEIGTKVLEAMRTPLEEGEVRIARRDGVARYPARFQLVLAANPCPCAPARDVDC
EEHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEECCCEEEEEEECCCCCCCCCCCCCC
ICPPLARRRYLGKLSGPLMDRIDLWVRMHGHTGPALGSEVAESSATVRERVAAARAAAAH
CCCHHHHHHHHHHHCCHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RWRADGWRTNAEVPGHVLRQRFPLPAEVVAPLEAAVRMGRLSARGADRAIRVAWTVCDLR
HHCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECC
GAPVPTARDVMLALNFRQRGAP
CCCCCCHHHEEEEEEHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]