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The map label for this gene is rpe [H]

Identifier: 54025573

GI number: 54025573

Start: 3814461

End: 3815144

Strand: Reverse

Name: rpe [H]

Synonym: nfa36030

Alternate gene names: 54025573

Gene position: 3815144-3814461 (Counterclockwise)

Preceding gene: 54025576

Following gene: 54025571

Centisome position: 63.36

GC content: 70.32

Gene sequence:

>684_bases
GTGTCCACGTTTTCCCGGCCCGCCGAGCCGATGATCGCCCCGTCCATCCTGTCCGCCGATTTCGCGCACCTCGCGGACGA
GGCGCGCCGGGTGGAGGGGTCGGACTGGCTGCACGTCGACGTGATGGACGCGCACTTCGTGCCGAACCTGACTCTGGGGC
TGCCGGTGGTGCAGAGCCTGCTGAAGGCCACCGACATCCCGCTGGACTGCCACCTGATGATCGAGGATCCGGGCCGCTGG
GCGCCGCCGTACGCGGAGGCGGGTGCGCACAATGTCACCTTCCACGCCGAGGCGACCGACGATCCGGTGGCCGTCGCGCG
CGACATCCGCGCCGCGGGCGCGAAGGCCGGTCTCTCGGTGAAGCCGAACACCCCGATCGAGCCCTACCTCGAGATCCTGA
AGCACTTCGACACCCTGCTCGTGATGAGCGTGGAGCCGGGCTTCGGCGGTCAGTCGTTCATTCCGCACGTGCTCGACAAG
GCGCGCACCGTGCGCCGGCTGGTTGACTCGGGCGAACTGCGCCTGCTGGTGGAGATCGACGGCGGCATCAACGCCGACAC
CATCGAACAGGCCGCCGAGGCGGGCATCGACTGCTTCGTGGCGGGGTCGGCGGTCTACAACACCGACGACCCCGGCGCGA
CGGTGGCGAAGCTGCGCAGGCAGGCCGCCGCGGCGCGCGGCTGA

Upstream 100 bases:

>100_bases
GTAGAGCCCCTGTTCCGCCGAAATGTTGATCACTCTGCACAGGCTACCCATTCCCGCCCCCTGACAATCGCGAAAGGGCG
CTGGCCTACACTCGCGCCCT

Downstream 100 bases:

>100_bases
TCCCGGAATCGTTTACCGGGCGGGTCTTTTCGCCGTCGCCAAGGTCGCGGCCACCACGTCGTGCAGCCGGGGCAGGGCCG
CGCCCGGCCGCTGGACCCAG

Product: ribulose-phosphate 3-epimerase

Products: NA

Alternate protein names: Pentose-5-phosphate 3-epimerase; PPE; R5P3E [H]

Number of amino acids: Translated: 227; Mature: 226

Protein sequence:

>227_residues
MSTFSRPAEPMIAPSILSADFAHLADEARRVEGSDWLHVDVMDAHFVPNLTLGLPVVQSLLKATDIPLDCHLMIEDPGRW
APPYAEAGAHNVTFHAEATDDPVAVARDIRAAGAKAGLSVKPNTPIEPYLEILKHFDTLLVMSVEPGFGGQSFIPHVLDK
ARTVRRLVDSGELRLLVEIDGGINADTIEQAAEAGIDCFVAGSAVYNTDDPGATVAKLRRQAAAARG

Sequences:

>Translated_227_residues
MSTFSRPAEPMIAPSILSADFAHLADEARRVEGSDWLHVDVMDAHFVPNLTLGLPVVQSLLKATDIPLDCHLMIEDPGRW
APPYAEAGAHNVTFHAEATDDPVAVARDIRAAGAKAGLSVKPNTPIEPYLEILKHFDTLLVMSVEPGFGGQSFIPHVLDK
ARTVRRLVDSGELRLLVEIDGGINADTIEQAAEAGIDCFVAGSAVYNTDDPGATVAKLRRQAAAARG
>Mature_226_residues
STFSRPAEPMIAPSILSADFAHLADEARRVEGSDWLHVDVMDAHFVPNLTLGLPVVQSLLKATDIPLDCHLMIEDPGRWA
PPYAEAGAHNVTFHAEATDDPVAVARDIRAAGAKAGLSVKPNTPIEPYLEILKHFDTLLVMSVEPGFGGQSFIPHVLDKA
RTVRRLVDSGELRLLVEIDGGINADTIEQAAEAGIDCFVAGSAVYNTDDPGATVAKLRRQAAAARG

Specific function: Unknown

COG id: COG0036

COG function: function code G; Pentose-5-phosphate-3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulose-phosphate 3-epimerase family [H]

Homologues:

Organism=Homo sapiens, GI40385883, Length=218, Percent_Identity=44.4954128440367, Blast_Score=186, Evalue=2e-47,
Organism=Homo sapiens, GI219879828, Length=218, Percent_Identity=42.2018348623853, Blast_Score=173, Evalue=1e-43,
Organism=Homo sapiens, GI24307923, Length=173, Percent_Identity=36.9942196531792, Blast_Score=119, Evalue=2e-27,
Organism=Escherichia coli, GI1789788, Length=216, Percent_Identity=43.9814814814815, Blast_Score=179, Evalue=9e-47,
Organism=Escherichia coli, GI1790523, Length=199, Percent_Identity=36.1809045226131, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI1790754, Length=210, Percent_Identity=34.2857142857143, Blast_Score=114, Evalue=6e-27,
Organism=Caenorhabditis elegans, GI17552948, Length=223, Percent_Identity=45.2914798206278, Blast_Score=199, Evalue=1e-51,
Organism=Saccharomyces cerevisiae, GI6322341, Length=230, Percent_Identity=40.8695652173913, Blast_Score=193, Evalue=2e-50,
Organism=Drosophila melanogaster, GI24586301, Length=216, Percent_Identity=41.2037037037037, Blast_Score=171, Evalue=3e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000056
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00834 Ribul_P_3_epim [H]

EC number: =5.1.3.1 [H]

Molecular weight: Translated: 24265; Mature: 24134

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: PS01085 RIBUL_P_3_EPIMER_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTFSRPAEPMIAPSILSADFAHLADEARRVEGSDWLHVDVMDAHFVPNLTLGLPVVQSL
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEHHHHHHHH
LKATDIPLDCHLMIEDPGRWAPPYAEAGAHNVTFHAEATDDPVAVARDIRAAGAKAGLSV
HHHHCCCCEEEEEEECCCCCCCCHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCC
KPNTPIEPYLEILKHFDTLLVMSVEPGFGGQSFIPHVLDKARTVRRLVDSGELRLLVEID
CCCCCHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEC
GGINADTIEQAAEAGIDCFVAGSAVYNTDDPGATVAKLRRQAAAARG
CCCCHHHHHHHHHCCCEEEEECCEEECCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure 
STFSRPAEPMIAPSILSADFAHLADEARRVEGSDWLHVDVMDAHFVPNLTLGLPVVQSL
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEHHHHHHHH
LKATDIPLDCHLMIEDPGRWAPPYAEAGAHNVTFHAEATDDPVAVARDIRAAGAKAGLSV
HHHHCCCCEEEEEEECCCCCCCCHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCC
KPNTPIEPYLEILKHFDTLLVMSVEPGFGGQSFIPHVLDKARTVRRLVDSGELRLLVEID
CCCCCHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEC
GGINADTIEQAAEAGIDCFVAGSAVYNTDDPGATVAKLRRQAAAARG
CCCCHHHHHHHHHCCCEEEEECCEEECCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]