| Definition | Nocardia farcinica IFM 10152 chromosome, complete genome. |
|---|---|
| Accession | NC_006361 |
| Length | 6,021,225 |
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The map label for this gene is 54025515
Identifier: 54025515
GI number: 54025515
Start: 3757280
End: 3758341
Strand: Reverse
Name: 54025515
Synonym: nfa35450
Alternate gene names: NA
Gene position: 3758341-3757280 (Counterclockwise)
Preceding gene: 54025516
Following gene: 54025514
Centisome position: 62.42
GC content: 70.34
Gene sequence:
>1062_bases ATGCCCTCGTCCTCGACGAGCCTGGTGACCGAACCGGATCTCCGCGCCCTGCGCGACTATCTGGCGACGGCGCTCGACGA CGGAATCGCCGGGGAACTGACCGCGTCGCTGATCGGCGGCGGCCGGTCGAACCCCACCTACTTGATCACCGACGACGCGC GGACCTGGGTGCTGCGGCGCCCGCCCTACGGGCACGTGCTGCCCAGCGCGCACGACATGGGCCGCGAGTTCACCGTGCTC TCGGCCCTGTGCGACTCGCCGGTCCCGGTACCGCGCCCGGTGCACCTGTGCCGCGACACCGAGGTGCTCGGTGCGCCGTT CTACCTGATGGAGCACGTGGTCGGCCGCTCGGTCGGCACTCCCGAGGACGCCGCCGAACTCACCGTGCCGCAACGTCGTT CGCTCGGGTTCGAATTCGCCGACACGCTCGCCGCACTCCACGACGTCGACGTCGACCGGGTCGGGCTGGCCGATTTCGGC AGACCCGACGGCTATCTCGAGCGTCAGCTCGAGCGCTGGGCGCGGCAGTGGCGCGCCTCCGCGACCCGCGAGCGGCCCGA GGTCGAGCTGCTGCTCGACACACTGGGCCGATCCATCCCGGTGACGCGCTTCCCCGGCATCGTGCACGGTGACGTCAAGC TCGACAACGTCCTGGTCTCGCCGCAGGACCCGACCCTGATCGTGGCGGTGCTCGACTGGGAGATGGCCACGCTCGGCGAC ACCTTCGCCGACGTGGGGATCCTGCTCAGTTTCTGGGACGTGCCCGGTGTGCCCGTCAATCCGATCACCCGCGGCCTGAC CGCGCTCGAGGGCTTTCCCACCCGAGCGGAACTGCTCGGCCGCTATGCCGAACAGCGCGGCGTCGAACTGTCCGACATCG AGTGGTACGCCGTCTTCGCCGACCTCAAGATCGCGGTGATCCTCGAAGGCATCAACGCCAGACACCGACAGGGCGAGACC GTCGGCGACGGTTTCGACGGCGTCGCCGACATGGTCGGCCCGCTTTTGCGCCGCGCGCTGGATCTGGCCGCCGCCTCCGA CCTTCCCGGGCCGCGGCGCTGA
Upstream 100 bases:
>100_bases GGACTATTCGCTCGGTGTTGACACATATCGTGTTCTGGGTCACTATGTGTTCGCCCGAACGATCGTTCGGGACTCGCCGC CGATGAAAGAGGATCGTCCT
Downstream 100 bases:
>100_bases CACGCCCCGGCGAATCGAAAGAACCCCCATGGATTTCGCATACAGCCACACCGTCGAACAGCTCCGGGCTCAGCTCGTCA CGTTCCTCCAGGACGTCGTG
Product: putative phosphotransferase
Products: NA
Alternate protein names: Phosphotransferase; Phosphotransferase Family Protein; Phosphotransferase Family Protein; Acyl-CoA Dehydrogenase; Phosphotransferase Family; Acyl-Co A Dehydrogenase; Acyl-CoA Dehydrogenase Domain-Containing Protein; Acyl-CoA Dehydrogenase FadE; Tyrosine Protein Kinase/Aminoglycoside Phosphotransferase; Acyl-CoA Dehydrogenase Family Member
Number of amino acids: Translated: 353; Mature: 352
Protein sequence:
>353_residues MPSSSTSLVTEPDLRALRDYLATALDDGIAGELTASLIGGGRSNPTYLITDDARTWVLRRPPYGHVLPSAHDMGREFTVL SALCDSPVPVPRPVHLCRDTEVLGAPFYLMEHVVGRSVGTPEDAAELTVPQRRSLGFEFADTLAALHDVDVDRVGLADFG RPDGYLERQLERWARQWRASATRERPEVELLLDTLGRSIPVTRFPGIVHGDVKLDNVLVSPQDPTLIVAVLDWEMATLGD TFADVGILLSFWDVPGVPVNPITRGLTALEGFPTRAELLGRYAEQRGVELSDIEWYAVFADLKIAVILEGINARHRQGET VGDGFDGVADMVGPLLRRALDLAAASDLPGPRR
Sequences:
>Translated_353_residues MPSSSTSLVTEPDLRALRDYLATALDDGIAGELTASLIGGGRSNPTYLITDDARTWVLRRPPYGHVLPSAHDMGREFTVL SALCDSPVPVPRPVHLCRDTEVLGAPFYLMEHVVGRSVGTPEDAAELTVPQRRSLGFEFADTLAALHDVDVDRVGLADFG RPDGYLERQLERWARQWRASATRERPEVELLLDTLGRSIPVTRFPGIVHGDVKLDNVLVSPQDPTLIVAVLDWEMATLGD TFADVGILLSFWDVPGVPVNPITRGLTALEGFPTRAELLGRYAEQRGVELSDIEWYAVFADLKIAVILEGINARHRQGET VGDGFDGVADMVGPLLRRALDLAAASDLPGPRR >Mature_352_residues PSSSTSLVTEPDLRALRDYLATALDDGIAGELTASLIGGGRSNPTYLITDDARTWVLRRPPYGHVLPSAHDMGREFTVLS ALCDSPVPVPRPVHLCRDTEVLGAPFYLMEHVVGRSVGTPEDAAELTVPQRRSLGFEFADTLAALHDVDVDRVGLADFGR PDGYLERQLERWARQWRASATRERPEVELLLDTLGRSIPVTRFPGIVHGDVKLDNVLVSPQDPTLIVAVLDWEMATLGDT FADVGILLSFWDVPGVPVNPITRGLTALEGFPTRAELLGRYAEQRGVELSDIEWYAVFADLKIAVILEGINARHRQGETV GDGFDGVADMVGPLLRRALDLAAASDLPGPRR
Specific function: Unknown
COG id: COG3173
COG function: function code R; Predicted aminoglycoside phosphotransferase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI48976061, Length=333, Percent_Identity=34.8348348348348, Blast_Score=189, Evalue=4e-48, Organism=Homo sapiens, GI211971008, Length=333, Percent_Identity=34.8348348348348, Blast_Score=189, Evalue=5e-48, Organism=Homo sapiens, GI38505218, Length=345, Percent_Identity=32.463768115942, Blast_Score=184, Evalue=9e-47, Organism=Caenorhabditis elegans, GI17562446, Length=309, Percent_Identity=35.9223300970874, Blast_Score=175, Evalue=3e-44,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38543; Mature: 38412
Theoretical pI: Translated: 4.56; Mature: 4.56
Prosite motif: PS00108 PROTEIN_KINASE_ST
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPSSSTSLVTEPDLRALRDYLATALDDGIAGELTASLIGGGRSNPTYLITDDARTWVLRR CCCCCCCEEECHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCEEEECCCCEEEEEC PPYGHVLPSAHDMGREFTVLSALCDSPVPVPRPVHLCRDTEVLGAPFYLMEHVVGRSVGT CCCCCCCCCHHHCCCHHHHHHHHHCCCCCCCCCHHHHCCCHHHCCHHHHHHHHHHCCCCC PEDAAELTVPQRRSLGFEFADTLAALHDVDVDRVGLADFGRPDGYLERQLERWARQWRAS CCCHHHCCCCHHHHCCHHHHHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHH ATRERPEVELLLDTLGRSIPVTRFPGIVHGDVKLDNVLVSPQDPTLIVAVLDWEMATLGD HHCCCCHHHHHHHHHCCCCCCHHCCCEEECCEEECEEEECCCCCEEEEEEECCHHHHHHH TFADVGILLSFWDVPGVPVNPITRGLTALEGFPTRAELLGRYAEQRGVELSDIEWYAVFA HHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCEECCCEEEEEEE DLKIAVILEGINARHRQGETVGDGFDGVADMVGPLLRRALDLAAASDLPGPRR CCEEEEEEECCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure PSSSTSLVTEPDLRALRDYLATALDDGIAGELTASLIGGGRSNPTYLITDDARTWVLRR CCCCCCEEECHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCEEEECCCCEEEEEC PPYGHVLPSAHDMGREFTVLSALCDSPVPVPRPVHLCRDTEVLGAPFYLMEHVVGRSVGT CCCCCCCCCHHHCCCHHHHHHHHHCCCCCCCCCHHHHCCCHHHCCHHHHHHHHHHCCCCC PEDAAELTVPQRRSLGFEFADTLAALHDVDVDRVGLADFGRPDGYLERQLERWARQWRAS CCCHHHCCCCHHHHCCHHHHHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHH ATRERPEVELLLDTLGRSIPVTRFPGIVHGDVKLDNVLVSPQDPTLIVAVLDWEMATLGD HHCCCCHHHHHHHHHCCCCCCHHCCCEEECCEEECEEEECCCCCEEEEEEECCHHHHHHH TFADVGILLSFWDVPGVPVNPITRGLTALEGFPTRAELLGRYAEQRGVELSDIEWYAVFA HHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCEECCCEEEEEEE DLKIAVILEGINARHRQGETVGDGFDGVADMVGPLLRRALDLAAASDLPGPRR CCEEEEEEECCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA