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The map label for this gene is xseB

Identifier: 53722785

GI number: 53722785

Start: 2418897

End: 2419190

Strand: Reverse

Name: xseB

Synonym: BPSS1764

Alternate gene names: 53722785

Gene position: 2419190-2418897 (Counterclockwise)

Preceding gene: 53722788

Following gene: 53722784

Centisome position: 76.24

GC content: 66.33

Gene sequence:

>294_bases
ATGGCGAAAACCGCAACCCCAGGCGCGTGCGCGTCGGACCCCGGTTCCGGGCCGCTGCCTGAAAACTACGAGATGGCGCT
CGCGGAACTGGAGGCGCTCGTCGCCCGAATGGAGGGCGGGACGCTGAGCCTCGAGGATTCGCTTGCGGCGTATCGCCGCG
GCGCGGCGCTCGTTGCATTTTGCCAACAACAATTGGAAAAAGCGGAGCAGCAGGTGCGTGTGCTCGACGGCGCCTCGCTC
AAGCCGCTTTCCGCAGGAACGGCCGCCGCGGACGGCGAAGACGACGATCTATGA

Upstream 100 bases:

>100_bases
GGCGCGCGGCGGCCAAGCCCCGCGAAGCCAAGTCGGCAGGTCGGAAAATTCTCTTTTGCCGTAGAATGTCCGACTTGTTT
TGAAATTTGACACCCCGTCC

Downstream 100 bases:

>100_bases
CATTCGACCAATGGATGCGCTCGGTGCTCGAGCGTGTCGAGACGGCCCTCGGCCATTATTTACCGGCCGGGACTGTGGCG
CCCGCGCAACTGCACGAAGC

Product: exodeoxyribonuclease VII small subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit

Number of amino acids: Translated: 97; Mature: 96

Protein sequence:

>97_residues
MAKTATPGACASDPGSGPLPENYEMALAELEALVARMEGGTLSLEDSLAAYRRGAALVAFCQQQLEKAEQQVRVLDGASL
KPLSAGTAAADGEDDDL

Sequences:

>Translated_97_residues
MAKTATPGACASDPGSGPLPENYEMALAELEALVARMEGGTLSLEDSLAAYRRGAALVAFCQQQLEKAEQQVRVLDGASL
KPLSAGTAAADGEDDDL
>Mature_96_residues
AKTATPGACASDPGSGPLPENYEMALAELEALVARMEGGTLSLEDSLAAYRRGAALVAFCQQQLEKAEQQVRVLDGASLK
PLSAGTAAADGEDDDL

Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides

COG id: COG1722

COG function: function code L; Exonuclease VII small subunit

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xseB family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): EX7S_BURM7 (A3MBD0)

Other databases:

- EMBL:   CP000547
- RefSeq:   YP_001077566.1
- ProteinModelPortal:   A3MBD0
- SMR:   A3MBD0
- GeneID:   4890484
- GenomeReviews:   CP000547_GR
- KEGG:   bmn:BMA10247_A0362
- TIGR:   BMA10247_A0362
- HOGENOM:   HBG728416
- OMA:   AEPASYE
- ProtClustDB:   PRK00977
- BioCyc:   BMAL320389:BMA10247_A0362-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00337
- InterPro:   IPR003761
- PIRSF:   PIRSF006488
- ProDom:   PD028235
- TIGRFAMs:   TIGR01280

Pfam domain/function: PF02609 Exonuc_VII_S

EC number: =3.1.11.6

Molecular weight: Translated: 9967; Mature: 9836

Theoretical pI: Translated: 3.94; Mature: 3.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKTATPGACASDPGSGPLPENYEMALAELEALVARMEGGTLSLEDSLAAYRRGAALVAF
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHH
CQQQLEKAEQQVRVLDGASLKPLSAGTAAADGEDDDL
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AKTATPGACASDPGSGPLPENYEMALAELEALVARMEGGTLSLEDSLAAYRRGAALVAF
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHH
CQQQLEKAEQQVRVLDGASLKPLSAGTAAADGEDDDL
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA