| Definition | Burkholderia pseudomallei K96243 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_006351 |
| Length | 3,173,005 |
Click here to switch to the map view.
The map label for this gene is trg [H]
Identifier: 53721759
GI number: 53721759
Start: 983344
End: 985440
Strand: Reverse
Name: trg [H]
Synonym: BPSS0733
Alternate gene names: 53721759
Gene position: 985440-983344 (Counterclockwise)
Preceding gene: 53721760
Following gene: 53721756
Centisome position: 31.06
GC content: 72.72
Gene sequence:
>2097_bases GTGACGCGTGCGTTCCGCCAACGTACCCGCCACCGCACTCCGGAGTCATTCATGCACGTGCCTTTCTTGCGGCGCGCGAG CGTCGGCGCGCGTCTCGCGGCGCTGTCGAGCGCGCTCTTCGCCCTGCTCTTCGCCGCGTTCGTCTGGGCGCTGACCCACG CGGCCTCCGGCCAGATCGCCGATCAGGTCCACGCGCGCATCGACGAGAAGGATCGCTCGATCGCCGCGATGATCGCGCTC TTCGACGAAGCGCTCACCGCCGAGGCGAGCCGCGCGATGACGCTCTTCGCGAGCTTCCTGCCGGCCGGCTACGCGCTTGA CGCCGCGCGCACGATCGACGTCGCGGGCGTCGCGACGCCCGCGCTCACCGCGGGCGGCCAGACGCTGAACCTCGATTTCT CGATTCCCGACCAGTTCCTGCAAAAGAGCGGCGCGATCGCGACGATCTTCGCGCGCCGCGGCGACGATTTCGTCCGCGTG ACGACCTCGCTGAAGAAGCAGGACGGCAGCCGCGCGATCGGCACGCTGCTCGACCGCAAGGGCCCCGCGTACGCGCCGCT CGTCGCCGGCCGGACCTACACCGGTCTCGCGACGCTGTTCGGCAAACGTTACATCACCCAATACAAGCCGATCGCCGACG CGAGCGGCGCGATCGTCGGCGCGCTGTTCGTCGGCATCGACGTCGGCGCGGAAATGCGGCTCGTCGAAAACGGCATCCGC CAGTTGAAGATCGGCGAGCACGGCTACTACTTCGTGCTCGACGCATCGGACGGCCCCGCGCGCGGCACCCTGCTCGTCCA TCCGGCGCGCGCGGGCCAGCGCGCCGACGACGCGGCCGCGCCCTACGCGCAAATGCTCGCCGCGAGGGAAGGCCAGTTGT CCTACACGTCGACCGACGCCGCCGCCGGCGACGACGGCCCGCGCGCGAAGTTCGTGTCGTTCGTGACGGTTCCGCAGTGG CAATGGCTCGTCGGCGGCATCGCGATCGACGACGAGGTGATGGCCGGCATGCGCGCGACCCGCAACCGCTTCGCGGCGAT CGGCTGCGCGTTCGTGCTCGCGTTCGCGGCGCTGTTCGTCGCGGTCGTCAAGCGCGTCGTCAGCCGCCCGCTCGATGCGG CGGCGCACGCGTCCGAGCGCTTCGCCGCGGGCGACCTCAGCGTGCGGATCGGCGCGCACGGCAAGCACGACAAGCACGGC AAGCACGATGCACGCGACGGCGCGGCGCGGCCGCCCGCGAGCGGCCGCAGCGACGAGATCGGCCGGCTCGTGCGCGCGGT CGACGGCATCGGCGACGGCCTCGCGCGCATCGTCGCGCAGGTGCGGCGCGGCGCGGCCGACATCGCGCACGGCACCGTGA CGATCGCGGCCGGCAGCAGCGACATGGCCGCGCGGATCGCGACGCAGGCAAGCAGCGTCGAGCAGACCGCGGCGAGCATG GAGCAGATCACGGCGGCCGTTCAGCAGAACGCCGATCACGCGGCGCAGGCGAGCGCGCTCGCGACCGGCGCGTCGAGCGC GGCGACGACGGGCGGCGCGGCCGTGCAGCGCGTCGTCGCGACGATGGGCGACATCCAGGGCGTCGCGCGCAGGATCGCCG AGATCACCGGCGTGATCGAAGGCATCGCGTTCCAGACCAACATCCTCGCGCTGAACGCGGCCGTCGAGGCCGCGCGCGCG GGCGAGCACGGCCGCGGCTTCGCGGTCGTCGCCTCCGAGGTGCGCGCGCTCGCGCAGCGCAGCGCGGCGGCGGCCAAGGA GATCGACGCGCTCGTCGGCGAATCGGCGACGACGGCCGAGCACGGCTTCCGGATCGCCGAGGACGCGCGCGCGGCGATGC AGGACATCGTCGCGCGCGTCGATCAGGTACGTGCGATCATCGCCGAGATCAGCGCGGCGTCGCGCGAACAGTCGGGCGGC ATCGAGCAGGTGAATCTGGCCGTCACGCAGATCGGCGCGGCGACGCAGCAGAACGCGACGCTGATCGCCGACGCCGAGCG CGCGGCTGCCGCGCTGCGCGACGAGGCCGCGCAGCTCGCGCACGCGGTCAGCGTGTTCAGGCTCGCGGCGGACGAACCCA CGCTCGACGCGCGTTGA
Upstream 100 bases:
>100_bases GGCACACGGCCCGCGCTTCGCGATCCGGACCGCCGCGCCGCCCCTTACAAAAACCTAAAGATTCGCCCGCGCGTGCCGAC AACCACGCCATCAGAGAGCG
Downstream 100 bases:
>100_bases CCGGGCGCGGGCGCGCGGCGAGGCACGCTCGCCGCGTGTCGCGCGGGCGCGCTGCGAGGATGCATCGCGGATGCCCGGGG GGCGAGCATCCGCGAGAGGC
Product: methyl-accepting chemotaxis protein
Products: NA
Alternate protein names: MCP-III; Ribose and galactose chemoreceptor protein [H]
Number of amino acids: Translated: 698; Mature: 697
Protein sequence:
>698_residues MTRAFRQRTRHRTPESFMHVPFLRRASVGARLAALSSALFALLFAAFVWALTHAASGQIADQVHARIDEKDRSIAAMIAL FDEALTAEASRAMTLFASFLPAGYALDAARTIDVAGVATPALTAGGQTLNLDFSIPDQFLQKSGAIATIFARRGDDFVRV TTSLKKQDGSRAIGTLLDRKGPAYAPLVAGRTYTGLATLFGKRYITQYKPIADASGAIVGALFVGIDVGAEMRLVENGIR QLKIGEHGYYFVLDASDGPARGTLLVHPARAGQRADDAAAPYAQMLAAREGQLSYTSTDAAAGDDGPRAKFVSFVTVPQW QWLVGGIAIDDEVMAGMRATRNRFAAIGCAFVLAFAALFVAVVKRVVSRPLDAAAHASERFAAGDLSVRIGAHGKHDKHG KHDARDGAARPPASGRSDEIGRLVRAVDGIGDGLARIVAQVRRGAADIAHGTVTIAAGSSDMAARIATQASSVEQTAASM EQITAAVQQNADHAAQASALATGASSAATTGGAAVQRVVATMGDIQGVARRIAEITGVIEGIAFQTNILALNAAVEAARA GEHGRGFAVVASEVRALAQRSAAAAKEIDALVGESATTAEHGFRIAEDARAAMQDIVARVDQVRAIIAEISAASREQSGG IEQVNLAVTQIGAATQQNATLIADAERAAAALRDEAAQLAHAVSVFRLAADEPTLDAR
Sequences:
>Translated_698_residues MTRAFRQRTRHRTPESFMHVPFLRRASVGARLAALSSALFALLFAAFVWALTHAASGQIADQVHARIDEKDRSIAAMIAL FDEALTAEASRAMTLFASFLPAGYALDAARTIDVAGVATPALTAGGQTLNLDFSIPDQFLQKSGAIATIFARRGDDFVRV TTSLKKQDGSRAIGTLLDRKGPAYAPLVAGRTYTGLATLFGKRYITQYKPIADASGAIVGALFVGIDVGAEMRLVENGIR QLKIGEHGYYFVLDASDGPARGTLLVHPARAGQRADDAAAPYAQMLAAREGQLSYTSTDAAAGDDGPRAKFVSFVTVPQW QWLVGGIAIDDEVMAGMRATRNRFAAIGCAFVLAFAALFVAVVKRVVSRPLDAAAHASERFAAGDLSVRIGAHGKHDKHG KHDARDGAARPPASGRSDEIGRLVRAVDGIGDGLARIVAQVRRGAADIAHGTVTIAAGSSDMAARIATQASSVEQTAASM EQITAAVQQNADHAAQASALATGASSAATTGGAAVQRVVATMGDIQGVARRIAEITGVIEGIAFQTNILALNAAVEAARA GEHGRGFAVVASEVRALAQRSAAAAKEIDALVGESATTAEHGFRIAEDARAAMQDIVARVDQVRAIIAEISAASREQSGG IEQVNLAVTQIGAATQQNATLIADAERAAAALRDEAAQLAHAVSVFRLAADEPTLDAR >Mature_697_residues TRAFRQRTRHRTPESFMHVPFLRRASVGARLAALSSALFALLFAAFVWALTHAASGQIADQVHARIDEKDRSIAAMIALF DEALTAEASRAMTLFASFLPAGYALDAARTIDVAGVATPALTAGGQTLNLDFSIPDQFLQKSGAIATIFARRGDDFVRVT TSLKKQDGSRAIGTLLDRKGPAYAPLVAGRTYTGLATLFGKRYITQYKPIADASGAIVGALFVGIDVGAEMRLVENGIRQ LKIGEHGYYFVLDASDGPARGTLLVHPARAGQRADDAAAPYAQMLAAREGQLSYTSTDAAAGDDGPRAKFVSFVTVPQWQ WLVGGIAIDDEVMAGMRATRNRFAAIGCAFVLAFAALFVAVVKRVVSRPLDAAAHASERFAAGDLSVRIGAHGKHDKHGK HDARDGAARPPASGRSDEIGRLVRAVDGIGDGLARIVAQVRRGAADIAHGTVTIAAGSSDMAARIATQASSVEQTAASME QITAAVQQNADHAAQASALATGASSAATTGGAAVQRVVATMGDIQGVARRIAEITGVIEGIAFQTNILALNAAVEAARAG EHGRGFAVVASEVRALAQRSAAAAKEIDALVGESATTAEHGFRIAEDARAAMQDIVARVDQVRAIIAEISAASREQSGGI EQVNLAVTQIGAATQQNATLIADAERAAAALRDEAAQLAHAVSVFRLAADEPTLDAR
Specific function: Chemotactic-signal transducers respond to changes in the concentration of attractants and repellents in the environment, transduce a signal from the outside to the inside of the cell, and facilitate sensory adaptation through the variation of the level of
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 methyl-accepting transducer domain [H]
Homologues:
Organism=Escherichia coli, GI1787690, Length=341, Percent_Identity=49.8533724340176, Blast_Score=266, Evalue=3e-72, Organism=Escherichia coli, GI1788195, Length=280, Percent_Identity=54.2857142857143, Blast_Score=240, Evalue=2e-64, Organism=Escherichia coli, GI1788194, Length=284, Percent_Identity=48.943661971831, Blast_Score=232, Evalue=6e-62, Organism=Escherichia coli, GI2367378, Length=288, Percent_Identity=51.0416666666667, Blast_Score=229, Evalue=4e-61, Organism=Escherichia coli, GI1789453, Length=340, Percent_Identity=37.6470588235294, Blast_Score=199, Evalue=5e-52,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004090 - InterPro: IPR003122 - InterPro: IPR004091 - InterPro: IPR004089 - InterPro: IPR003660 [H]
Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal; PF02203 TarH [H]
EC number: NA
Molecular weight: Translated: 72735; Mature: 72604
Theoretical pI: Translated: 8.47; Mature: 8.47
Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRAFRQRTRHRTPESFMHVPFLRRASVGARLAALSSALFALLFAAFVWALTHAASGQIA CCHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH DQVHARIDEKDRSIAAMIALFDEALTAEASRAMTLFASFLPAGYALDAARTIDVAGVATP HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCHHEEEEHHCCCC ALTAGGQTLNLDFSIPDQFLQKSGAIATIFARRGDDFVRVTTSLKKQDGSRAIGTLLDRK HHCCCCCEEEEEECCCHHHHHCCCCEEEEEECCCCCEEEEHHHHHHCCCCHHHHHHHHCC GPAYAPLVAGRTYTGLATLFGKRYITQYKPIADASGAIVGALFVGIDVGAEMRLVENGIR CCCCCCEECCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH QLKIGEHGYYFVLDASDGPARGTLLVHPARAGQRADDAAAPYAQMLAAREGQLSYTSTDA EEEECCCCEEEEEECCCCCCCCEEEEECCCCCCCCCHHHCHHHHHHHHCCCCCEECCCCC AAGDDGPRAKFVSFVTVPQWQWLVGGIAIDDEVMAGMRATRNRFAAIGCAFVLAFAALFV CCCCCCCCHHEEEEEECCCHHHHHCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AVVKRVVSRPLDAAAHASERFAAGDLSVRIGAHGKHDKHGKHDARDGAARPPASGRSDEI HHHHHHHCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHH GRLVRAVDGIGDGLARIVAQVRRGAADIAHGTVTIAAGSSDMAARIATQASSVEQTAASM HHHHHHHHHCCHHHHHHHHHHHHCHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHH EQITAAVQQNADHAAQASALATGASSAATTGGAAVQRVVATMGDIQGVARRIAEITGVIE HHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GIAFQTNILALNAAVEAARAGEHGRGFAVVASEVRALAQRSAAAAKEIDALVGESATTAE HHHHHHHHEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH HGFRIAEDARAAMQDIVARVDQVRAIIAEISAASREQSGGIEQVNLAVTQIGAATQQNAT HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCE LIADAERAAAALRDEAAQLAHAVSVFRLAADEPTLDAR EEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure TRAFRQRTRHRTPESFMHVPFLRRASVGARLAALSSALFALLFAAFVWALTHAASGQIA CHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH DQVHARIDEKDRSIAAMIALFDEALTAEASRAMTLFASFLPAGYALDAARTIDVAGVATP HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCHHEEEEHHCCCC ALTAGGQTLNLDFSIPDQFLQKSGAIATIFARRGDDFVRVTTSLKKQDGSRAIGTLLDRK HHCCCCCEEEEEECCCHHHHHCCCCEEEEEECCCCCEEEEHHHHHHCCCCHHHHHHHHCC GPAYAPLVAGRTYTGLATLFGKRYITQYKPIADASGAIVGALFVGIDVGAEMRLVENGIR CCCCCCEECCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH QLKIGEHGYYFVLDASDGPARGTLLVHPARAGQRADDAAAPYAQMLAAREGQLSYTSTDA EEEECCCCEEEEEECCCCCCCCEEEEECCCCCCCCCHHHCHHHHHHHHCCCCCEECCCCC AAGDDGPRAKFVSFVTVPQWQWLVGGIAIDDEVMAGMRATRNRFAAIGCAFVLAFAALFV CCCCCCCCHHEEEEEECCCHHHHHCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AVVKRVVSRPLDAAAHASERFAAGDLSVRIGAHGKHDKHGKHDARDGAARPPASGRSDEI HHHHHHHCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHH GRLVRAVDGIGDGLARIVAQVRRGAADIAHGTVTIAAGSSDMAARIATQASSVEQTAASM HHHHHHHHHCCHHHHHHHHHHHHCHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHH EQITAAVQQNADHAAQASALATGASSAATTGGAAVQRVVATMGDIQGVARRIAEITGVIE HHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GIAFQTNILALNAAVEAARAGEHGRGFAVVASEVRALAQRSAAAAKEIDALVGESATTAE HHHHHHHHEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH HGFRIAEDARAAMQDIVARVDQVRAIIAEISAASREQSGGIEQVNLAVTQIGAATQQNAT HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCE LIADAERAAAALRDEAAQLAHAVSVFRLAADEPTLDAR EEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 6374654; 9097039; 9278503 [H]