| Definition | Burkholderia pseudomallei K96243 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_006350 |
| Length | 4,074,542 |
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The map label for this gene is 53720386
Identifier: 53720386
GI number: 53720386
Start: 3314220
End: 3315494
Strand: Reverse
Name: 53720386
Synonym: BPSL2777
Alternate gene names: NA
Gene position: 3315494-3314220 (Counterclockwise)
Preceding gene: 53720387
Following gene: 53720385
Centisome position: 81.37
GC content: 68.94
Gene sequence:
>1275_bases ATGCGCGCGCGCGAACGCGAGGACGCGACGATGATTCGCGTCCGCGATTCGCTCATATCGCTGTGCGGCGTCGTCGCCGG GCAGGCCGCGCTCTTCGGCTGTATCTCGCTGATCGGGCGCTTTCAGGGCCCGGAGGCGCTCGGCCACTTCAACTATCTGC TCGCGTTGGCGACGTTCGCCGGCACGCTGCTCGCGTGCCGCTACGAGCTCGCATGCGTGAGCGACAACCCGGCCGATTCG TTCAACGCGTTCGTCAACGTGATGGTGCTCGCCGGGGCGGCGGTCTCGATCGGCTGCGTCGCGATCGCCGTCGCGGGCCG CACGGACCTGTACATCGTCGCTGCTTACGGGTTCGCGGCGTTCGCCCAACTCGCCGCGGGCGGCTACCTGAACAGCCTGC GGCGCTACGGCTGGATCGCCGCGAGCCGGATCGCCGTCAACGGATCGTTTCTCGTCGGCGTGCTCGCCGCGACATTCGCG CCGACGTTCCGGGCGCGCTCCGGCTCGATCGACGCGTTCCGCGCCTACGCGGCGATCACGGCGGCGGTCGCGCTGCTGAT GCTGATCGCGGTGGCGTTGCACGGCAGGCGGCGCGGCTATTCGTTCGCGGTGACGCGCGCATTCTTCGTCGAGCACAGCC GGTTCGCGAAGTACATCCTGCCGTCCACGTTGTGCGGCTCGGTGCTGACCTATGCGCTCGCGATCGTGATTCCGCACTGG TTCGACGCGCAGAGCGCCGGCTATTTCGCGGCTGCGTACCGGCTCGGCTTCTTCCCCGTGTCGCTGATCGCGCAGAGCCT CGGCGGCGTGTTCCGGCGCGACGCGATGGCCGCGATGGCGGGCGACGATGCCCACGTGCTGGTGCCGAAGGTATTCGGCG CATACGCGCGCGCGCTCGCGCTGCTCGCGGCCGGCTACGCGCTGGGCGGCGCGCTGCTGTTCGGCCCGCTTGTCGAGCTT TTCTTCGGCGCGCGCTGGAACGGCGCGATCGCGTTCTTTCTTTGCATGATTCCGCTTTTCGCATTCCAGATGATCTACGT GCCGCTGTCGCAGATCTTTCTCGCGGCGCGCGCGCAGCGCATCGATTTCCTGTTTCAGCTCGGCTGCGGTGCCGTGCTCG CCGGCGCGCTCGTCACGGCGAAGCTCGCGGGGCTGCCGGTGCTGGCGAGCGTGCGCCTCTTTTCGTTCTCGGGCGCCGTG CTGATGATCGCCGGCATCGCGCTGACATTCAGCGTGATGAGCGGCAGCGTGTCGCGTCGGCGCGCCGGCGCCTGA
Upstream 100 bases:
>100_bases CTACGTCGCATACGAATACGGAGCGAAGCGCGATGCCTGACGCGAACATGCGCGACGAACGCCGTGGCGACGGCGGCCGG CCGGTGCCGGCCGACGGGCG
Downstream 100 bases:
>100_bases CGTTTATTCCATTTCTTCATTGAGCGCAGATCATGATTGTCGTCGTCGTCGATTCGATGGAGCGGTACTACTTTGCCGTG CGGCTCGTGAAGGCGGTCAG
Product: putative O-antigen translocase
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 424; Mature: 424
Protein sequence:
>424_residues MRAREREDATMIRVRDSLISLCGVVAGQAALFGCISLIGRFQGPEALGHFNYLLALATFAGTLLACRYELACVSDNPADS FNAFVNVMVLAGAAVSIGCVAIAVAGRTDLYIVAAYGFAAFAQLAAGGYLNSLRRYGWIAASRIAVNGSFLVGVLAATFA PTFRARSGSIDAFRAYAAITAAVALLMLIAVALHGRRRGYSFAVTRAFFVEHSRFAKYILPSTLCGSVLTYALAIVIPHW FDAQSAGYFAAAYRLGFFPVSLIAQSLGGVFRRDAMAAMAGDDAHVLVPKVFGAYARALALLAAGYALGGALLFGPLVEL FFGARWNGAIAFFLCMIPLFAFQMIYVPLSQIFLAARAQRIDFLFQLGCGAVLAGALVTAKLAGLPVLASVRLFSFSGAV LMIAGIALTFSVMSGSVSRRRAGA
Sequences:
>Translated_424_residues MRAREREDATMIRVRDSLISLCGVVAGQAALFGCISLIGRFQGPEALGHFNYLLALATFAGTLLACRYELACVSDNPADS FNAFVNVMVLAGAAVSIGCVAIAVAGRTDLYIVAAYGFAAFAQLAAGGYLNSLRRYGWIAASRIAVNGSFLVGVLAATFA PTFRARSGSIDAFRAYAAITAAVALLMLIAVALHGRRRGYSFAVTRAFFVEHSRFAKYILPSTLCGSVLTYALAIVIPHW FDAQSAGYFAAAYRLGFFPVSLIAQSLGGVFRRDAMAAMAGDDAHVLVPKVFGAYARALALLAAGYALGGALLFGPLVEL FFGARWNGAIAFFLCMIPLFAFQMIYVPLSQIFLAARAQRIDFLFQLGCGAVLAGALVTAKLAGLPVLASVRLFSFSGAV LMIAGIALTFSVMSGSVSRRRAGA >Mature_424_residues MRAREREDATMIRVRDSLISLCGVVAGQAALFGCISLIGRFQGPEALGHFNYLLALATFAGTLLACRYELACVSDNPADS FNAFVNVMVLAGAAVSIGCVAIAVAGRTDLYIVAAYGFAAFAQLAAGGYLNSLRRYGWIAASRIAVNGSFLVGVLAATFA PTFRARSGSIDAFRAYAAITAAVALLMLIAVALHGRRRGYSFAVTRAFFVEHSRFAKYILPSTLCGSVLTYALAIVIPHW FDAQSAGYFAAAYRLGFFPVSLIAQSLGGVFRRDAMAAMAGDDAHVLVPKVFGAYARALALLAAGYALGGALLFGPLVEL FFGARWNGAIAFFLCMIPLFAFQMIYVPLSQIFLAARAQRIDFLFQLGCGAVLAGALVTAKLAGLPVLASVRLFSFSGAV LMIAGIALTFSVMSGSVSRRRAGA
Specific function: Unknown
COG id: COG2244
COG function: function code R; Membrane protein involved in the export of O-antigen and teichoic acid
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44717; Mature: 44717
Theoretical pI: Translated: 10.01; Mature: 10.01
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRAREREDATMIRVRDSLISLCGVVAGQAALFGCISLIGRFQGPEALGHFNYLLALATFA CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH GTLLACRYELACVSDNPADSFNAFVNVMVLAGAAVSIGCVAIAVAGRTDLYIVAAYGFAA HHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEEEHHHHHH FAQLAAGGYLNSLRRYGWIAASRIAVNGSFLVGVLAATFAPTFRARSGSIDAFRAYAAIT HHHHHHCHHHHHHHHHCCHHHHHEEECCHHHHHHHHHHHCHHHCCCCCCHHHHHHHHHHH AAVALLMLIAVALHGRRRGYSFAVTRAFFVEHSRFAKYILPSTLCGSVLTYALAIVIPHW HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC FDAQSAGYFAAAYRLGFFPVSLIAQSLGGVFRRDAMAAMAGDDAHVLVPKVFGAYARALA CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHH LLAAGYALGGALLFGPLVELFFGARWNGAIAFFLCMIPLFAFQMIYVPLSQIFLAARAQR HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IDFLFQLGCGAVLAGALVTAKLAGLPVLASVRLFSFSGAVLMIAGIALTFSVMSGSVSRR HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHH RAGA CCCC >Mature Secondary Structure MRAREREDATMIRVRDSLISLCGVVAGQAALFGCISLIGRFQGPEALGHFNYLLALATFA CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH GTLLACRYELACVSDNPADSFNAFVNVMVLAGAAVSIGCVAIAVAGRTDLYIVAAYGFAA HHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEEEHHHHHH FAQLAAGGYLNSLRRYGWIAASRIAVNGSFLVGVLAATFAPTFRARSGSIDAFRAYAAIT HHHHHHCHHHHHHHHHCCHHHHHEEECCHHHHHHHHHHHCHHHCCCCCCHHHHHHHHHHH AAVALLMLIAVALHGRRRGYSFAVTRAFFVEHSRFAKYILPSTLCGSVLTYALAIVIPHW HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC FDAQSAGYFAAAYRLGFFPVSLIAQSLGGVFRRDAMAAMAGDDAHVLVPKVFGAYARALA CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHH LLAAGYALGGALLFGPLVELFFGARWNGAIAFFLCMIPLFAFQMIYVPLSQIFLAARAQR HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IDFLFQLGCGAVLAGALVTAKLAGLPVLASVRLFSFSGAVLMIAGIALTFSVMSGSVSRR HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHH RAGA CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA