| Definition | Burkholderia pseudomallei K96243 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_006350 |
| Length | 4,074,542 |
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The map label for this gene is 53720385
Identifier: 53720385
GI number: 53720385
Start: 3312991
End: 3314187
Strand: Reverse
Name: 53720385
Synonym: BPSL2776
Alternate gene names: NA
Gene position: 3314187-3312991 (Counterclockwise)
Preceding gene: 53720386
Following gene: 53720384
Centisome position: 81.34
GC content: 65.75
Gene sequence:
>1197_bases ATGATTGTCGTCGTCGTCGATTCGATGGAGCGGTACTACTTTGCCGTGCGGCTCGTGAAGGCGGTCAGAAAGGAATTCGA CTTTCTGTTCGCCGCGAGCGAGCCGCTCGCGCACCTGATGGCACTGGCCGCGGGCTTTCGGTCGGTCTATTTGCGGCGCG GGGCGCATGCGCCCGCCATGCTCGATGCGGCGGCCGGGATTCGGTCCGATGCATCGATCGAGGTGCTGAACGGACAGATG ACGCCCGAGCGCGCGCGCGCCGACGCGCAGGCGGTCTTCGCCGCGATGTCCGGCGTGTTCCGCCGTCATCTCGTGTCGCA GTGCCTGATGTGGAACGGCCAGCAGCTCGTTTGCCGCGCGGTCGCGCACGCGTGCGCGACGCACGGGGTACCGACGAAAT TCGTCGAGATCTCGAATTTGCCGGACAAGCTGTTCGTCGATCGGCTCGGCGTCAACGCGCTGTCGTCGATCAGCCGCAAT CCGGCCGTCATCGACGGCTTGCCGATGCCGACCGAAGGCGAGCATCGCCGCTGGTTCGCGCGCTACGAGGCGTACAAGGC GCGGCCGCTGCCGCAGTCGCGCACGTCGTGGGCGCGCAAGGCGATGTCGGCCGCGAACTATGCGCTGAAGCTCGCCACGC AAGGCGTGGCGCGCAAACGTTTGGACGCGGCGCGCGCGACGAACGGCGCGCGCGCGCCGGCGCAGGCGAAAGTGCTGAGC ACGAAGGAACTCTCGGCACTGCGCTACGTGTTCCTGCCGCTGCAGGTGTCGGGCGACACGCAGATCAAGCTGCATTCGGA TGTCGACAACCTGAAGGCGATCCGGCTCGCGTTCGAGCACGCGGCGAACGAGAACGCGGACCTGATCGTCAAGCTGCATC CGGCCGAGCGTGACGTGGCCGTGATCGACGAGGTGGTGCGGATGCAGCGCGTCTATCACTTCGACCTCGTGACGTCGCCG ACCACCGATCTGATCAAGCACGCGCATTCGGTCGTCACGATCAATTCGACGGTCGGCCTCGAGGCGCTGCTGTACGGCAA GCCGGTCGTGTCGCTCGGCCGGTGCTTCTACAAGGAGTTCGATCGCGCGAGGCTGCTCAAGTACATCCATGCGTTCCTGA TCGACGGCATCGATTACTTCGGTCGAGCGGACATCGCGCCGCGCGCCGCGCGAAACGTGTTCTCGATGAAGCACTGA
Upstream 100 bases:
>100_bases TCGCCGGCATCGCGCTGACATTCAGCGTGATGAGCGGCAGCGTGTCGCGTCGGCGCGCCGGCGCCTGACGTTTATTCCAT TTCTTCATTGAGCGCAGATC
Downstream 100 bases:
>100_bases CATGCGCACGACGCTGAAACGGACCCTCGATGCGATCGCCGAGGATCGCAGGCGCAACGCGTTCTTCAAGACGCGCTGCG TCGTCGTGTTCTTCCGGATC
Product: hypothetical protein
Products: NA
Alternate protein names: Capsule Polysaccharide Biosynthesis; Capsule Polysaccharide Protein HcsB
Number of amino acids: Translated: 398; Mature: 398
Protein sequence:
>398_residues MIVVVVDSMERYYFAVRLVKAVRKEFDFLFAASEPLAHLMALAAGFRSVYLRRGAHAPAMLDAAAGIRSDASIEVLNGQM TPERARADAQAVFAAMSGVFRRHLVSQCLMWNGQQLVCRAVAHACATHGVPTKFVEISNLPDKLFVDRLGVNALSSISRN PAVIDGLPMPTEGEHRRWFARYEAYKARPLPQSRTSWARKAMSAANYALKLATQGVARKRLDAARATNGARAPAQAKVLS TKELSALRYVFLPLQVSGDTQIKLHSDVDNLKAIRLAFEHAANENADLIVKLHPAERDVAVIDEVVRMQRVYHFDLVTSP TTDLIKHAHSVVTINSTVGLEALLYGKPVVSLGRCFYKEFDRARLLKYIHAFLIDGIDYFGRADIAPRAARNVFSMKH
Sequences:
>Translated_398_residues MIVVVVDSMERYYFAVRLVKAVRKEFDFLFAASEPLAHLMALAAGFRSVYLRRGAHAPAMLDAAAGIRSDASIEVLNGQM TPERARADAQAVFAAMSGVFRRHLVSQCLMWNGQQLVCRAVAHACATHGVPTKFVEISNLPDKLFVDRLGVNALSSISRN PAVIDGLPMPTEGEHRRWFARYEAYKARPLPQSRTSWARKAMSAANYALKLATQGVARKRLDAARATNGARAPAQAKVLS TKELSALRYVFLPLQVSGDTQIKLHSDVDNLKAIRLAFEHAANENADLIVKLHPAERDVAVIDEVVRMQRVYHFDLVTSP TTDLIKHAHSVVTINSTVGLEALLYGKPVVSLGRCFYKEFDRARLLKYIHAFLIDGIDYFGRADIAPRAARNVFSMKH >Mature_398_residues MIVVVVDSMERYYFAVRLVKAVRKEFDFLFAASEPLAHLMALAAGFRSVYLRRGAHAPAMLDAAAGIRSDASIEVLNGQM TPERARADAQAVFAAMSGVFRRHLVSQCLMWNGQQLVCRAVAHACATHGVPTKFVEISNLPDKLFVDRLGVNALSSISRN PAVIDGLPMPTEGEHRRWFARYEAYKARPLPQSRTSWARKAMSAANYALKLATQGVARKRLDAARATNGARAPAQAKVLS TKELSALRYVFLPLQVSGDTQIKLHSDVDNLKAIRLAFEHAANENADLIVKLHPAERDVAVIDEVVRMQRVYHFDLVTSP TTDLIKHAHSVVTINSTVGLEALLYGKPVVSLGRCFYKEFDRARLLKYIHAFLIDGIDYFGRADIAPRAARNVFSMKH
Specific function: Unknown
COG id: COG3562
COG function: function code M; Capsule polysaccharide export protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44151; Mature: 44151
Theoretical pI: Translated: 10.24; Mature: 10.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIVVVVDSMERYYFAVRLVKAVRKEFDFLFAASEPLAHLMALAAGFRSVYLRRGAHAPAM CEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHH LDAAAGIRSDASIEVLNGQMTPERARADAQAVFAAMSGVFRRHLVSQCLMWNGQQLVCRA HHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH VAHACATHGVPTKFVEISNLPDKLFVDRLGVNALSSISRNPAVIDGLPMPTEGEHRRWFA HHHHHHHCCCCCEEEEECCCCHHHHHHHHCHHHHHHCCCCCCEECCCCCCCCCCHHHHHH RYEAYKARPLPQSRTSWARKAMSAANYALKLATQGVARKRLDAARATNGARAPAQAKVLS HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH TKELSALRYVFLPLQVSGDTQIKLHSDVDNLKAIRLAFEHAANENADLIVKLHPAERDVA HHHHHHEEEEEEEEEECCCCEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHH VIDEVVRMQRVYHFDLVTSPTTDLIKHAHSVVTINSTVGLEALLYGKPVVSLGRCFYKEF HHHHHHHHHHHHHHEECCCCHHHHHHCCCCEEEEECCCCCHHHHCCCCHHHHHHHHHHHH DRARLLKYIHAFLIDGIDYFGRADIAPRAARNVFSMKH HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCC >Mature Secondary Structure MIVVVVDSMERYYFAVRLVKAVRKEFDFLFAASEPLAHLMALAAGFRSVYLRRGAHAPAM CEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHH LDAAAGIRSDASIEVLNGQMTPERARADAQAVFAAMSGVFRRHLVSQCLMWNGQQLVCRA HHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH VAHACATHGVPTKFVEISNLPDKLFVDRLGVNALSSISRNPAVIDGLPMPTEGEHRRWFA HHHHHHHCCCCCEEEEECCCCHHHHHHHHCHHHHHHCCCCCCEECCCCCCCCCCHHHHHH RYEAYKARPLPQSRTSWARKAMSAANYALKLATQGVARKRLDAARATNGARAPAQAKVLS HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH TKELSALRYVFLPLQVSGDTQIKLHSDVDNLKAIRLAFEHAANENADLIVKLHPAERDVA HHHHHHEEEEEEEEEECCCCEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHH VIDEVVRMQRVYHFDLVTSPTTDLIKHAHSVVTINSTVGLEALLYGKPVVSLGRCFYKEF HHHHHHHHHHHHHHEECCCCHHHHHHCCCCEEEEECCCCCHHHHCCCCHHHHHHHHHHHH DRARLLKYIHAFLIDGIDYFGRADIAPRAARNVFSMKH HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA