| Definition | Burkholderia pseudomallei K96243 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_006350 |
| Length | 4,074,542 |
Click here to switch to the map view.
The map label for this gene is 53719640
Identifier: 53719640
GI number: 53719640
Start: 2424837
End: 2425361
Strand: Reverse
Name: 53719640
Synonym: BPSL2029
Alternate gene names: NA
Gene position: 2425361-2424837 (Counterclockwise)
Preceding gene: 53719641
Following gene: 53719639
Centisome position: 59.52
GC content: 72.38
Gene sequence:
>525_bases ATGTCGACCTTACAACGAGTGCTTTTCCTGCTGGGCGTCGCGGCGTGGCCGGCTGCCGGCCGGGCCGACACGCTGCTGCC CCGAACCCAGGCCTTCACGGTCAGCGCGCAGATCGTCGCGGGCTGCGGCGTCGCGGGCGGCGGGCCGGCGAGCGGCCTGA ACTTCGGCACGCTCGACTTCGGCGCGCATCCGGCCGTCGCGACGGGGCAGGTGAGCGCGGCCGTCGGCGGCGGCGCGTTG CAGATCGAATGTTCGCCGGGCTCGACGTTGAAGATGACGATCGACGGCGGCGCGAACGCGAGCGCGGGCAACACGCAGCG CAATCTGGCGAGCGGCGGCGCGCGCGTCGCATACCGGTTGTATTCGGACCCGGCGCGCACGCAGGCGATCGCGGTCGGGC AGGCGGTGTCGCTGCCCGTGTCCGGCACGATCACGCTGCCGATCTACGGCGCGCTCACGCTGCCGGGCGGCGGCGCGCCC GCCGGCACGTATACCGATACCGCGCAGGTCACGCTCAGTTATTAA
Upstream 100 bases:
>100_bases CTGAACGTCACGCTCGGCTGGTAAGCGAGCGCGCCGTCCCGTTTGGCCTCGCGGCTCGCGCGCTAGCGGGCGGCGAGGCG GTCCCAGGTTTCCGATCGTC
Downstream 100 bases:
>100_bases TCAATCAGGAATCCGTGATGAAAGTTTCGAGATCGCCCGGCGCGCCGGCGCGCGCGGCAAGGGCGCTGCGCTGCGCGCTG CTCGGCGCGGCCGCCGCCGC
Product: hypothetical protein
Products: NA
Alternate protein names: Type I Pilus Protein CsuB; Spore Coat Protein U Domain-Contain Protein; Spore Coat U; Type 1 Pili Subunit CsuA/B Protein; Fimbrial Protein
Number of amino acids: Translated: 174; Mature: 173
Protein sequence:
>174_residues MSTLQRVLFLLGVAAWPAAGRADTLLPRTQAFTVSAQIVAGCGVAGGGPASGLNFGTLDFGAHPAVATGQVSAAVGGGAL QIECSPGSTLKMTIDGGANASAGNTQRNLASGGARVAYRLYSDPARTQAIAVGQAVSLPVSGTITLPIYGALTLPGGGAP AGTYTDTAQVTLSY
Sequences:
>Translated_174_residues MSTLQRVLFLLGVAAWPAAGRADTLLPRTQAFTVSAQIVAGCGVAGGGPASGLNFGTLDFGAHPAVATGQVSAAVGGGAL QIECSPGSTLKMTIDGGANASAGNTQRNLASGGARVAYRLYSDPARTQAIAVGQAVSLPVSGTITLPIYGALTLPGGGAP AGTYTDTAQVTLSY >Mature_173_residues STLQRVLFLLGVAAWPAAGRADTLLPRTQAFTVSAQIVAGCGVAGGGPASGLNFGTLDFGAHPAVATGQVSAAVGGGALQ IECSPGSTLKMTIDGGANASAGNTQRNLASGGARVAYRLYSDPARTQAIAVGQAVSLPVSGTITLPIYGALTLPGGGAPA GTYTDTAQVTLSY
Specific function: Unknown
COG id: COG5430
COG function: function code S; Uncharacterized secreted protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17049; Mature: 16918
Theoretical pI: Translated: 8.71; Mature: 8.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTLQRVLFLLGVAAWPAAGRADTLLPRTQAFTVSAQIVAGCGVAGGGPASGLNFGTLDF CCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCEECC GAHPAVATGQVSAAVGGGALQIECSPGSTLKMTIDGGANASAGNTQRNLASGGARVAYRL CCCCCEECCEEEEEECCCEEEEEECCCCEEEEEECCCCCCCCCCCCHHHCCCCCEEEEEE YSDPARTQAIAVGQAVSLPVSGTITLPIYGALTLPGGGAPAGTYTDTAQVTLSY ECCCCHHEEEEECCEEECCCCCEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEC >Mature Secondary Structure STLQRVLFLLGVAAWPAAGRADTLLPRTQAFTVSAQIVAGCGVAGGGPASGLNFGTLDF CHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCEECC GAHPAVATGQVSAAVGGGALQIECSPGSTLKMTIDGGANASAGNTQRNLASGGARVAYRL CCCCCEECCEEEEEECCCEEEEEECCCCEEEEEECCCCCCCCCCCCHHHCCCCCEEEEEE YSDPARTQAIAVGQAVSLPVSGTITLPIYGALTLPGGGAPAGTYTDTAQVTLSY ECCCCHHEEEEECCEEECCCCCEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA