| Definition | Burkholderia pseudomallei K96243 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_006350 |
| Length | 4,074,542 |
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The map label for this gene is yajQ [C]
Identifier: 53718506
GI number: 53718506
Start: 1007313
End: 1007798
Strand: Reverse
Name: yajQ [C]
Synonym: BPSL0867
Alternate gene names: 53718506
Gene position: 1007798-1007313 (Counterclockwise)
Preceding gene: 53718508
Following gene: 53718503
Centisome position: 24.73
GC content: 59.05
Gene sequence:
>486_bases ATGCCATCGTTCGACGTCGTTTCCGAAGCGAACATGATCGAAGTGAAAAACGCAGTCGAGCAGTCGAACAAGGAAATTTC GACCCGCTTCGACTTCAAGGGCTCCGACGCGCGCGTCGAGCAGAAGGAGCGCGAGCTCACGCTCTACGCCGACGACGACT TCAAGCTCGGCCAGGTCAAGGACGTGCTGATCGGCAAGATGGCCAAGCGCAATGTCGACGTGCGCTTTCTCGACTACGGC AAGATCGAGAAGATCGGCGGCGACAAGGTCAAGCAGGTCGTGACGATCAAGAAAGGCGTGTCGGGCGACCTCGCGAAAAA AGTCGTGCGCATCGTGAAGGACAGCAAGATCAAGGTGCAGGCGAGCATCCAGGGCGACGCGGTGCGCGTGTCCGGCGCGA AGCGCGACGATCTGCAAAGCACGATCGCACTGCTGCGCAAGGAAGTGACCGATACGCCGCTCGATTTCAACAACTTCCGC GACTGA
Upstream 100 bases:
>100_bases TTGGGCAAATGTAGGGGCGCCGGTAAAATGGCGGTCAGTCCGCAATTATAGCGAGTGCCCATGCGCAGGCCGCGTGCGGC ACGCTCTACAGGAGAATGCC
Downstream 100 bases:
>100_bases CGCGCGCACAGGCGCGGCGCACGCAAGGCCGCACGCGCCGATCGAGCGCCGGCCGCTCGCGCTTGTCGACGGCGCACGCA AAGCTCGAACGCAGCGCAAT
Product: putative nucleotide-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 161; Mature: 160
Protein sequence:
>161_residues MPSFDVVSEANMIEVKNAVEQSNKEISTRFDFKGSDARVEQKERELTLYADDDFKLGQVKDVLIGKMAKRNVDVRFLDYG KIEKIGGDKVKQVVTIKKGVSGDLAKKVVRIVKDSKIKVQASIQGDAVRVSGAKRDDLQSTIALLRKEVTDTPLDFNNFR D
Sequences:
>Translated_161_residues MPSFDVVSEANMIEVKNAVEQSNKEISTRFDFKGSDARVEQKERELTLYADDDFKLGQVKDVLIGKMAKRNVDVRFLDYG KIEKIGGDKVKQVVTIKKGVSGDLAKKVVRIVKDSKIKVQASIQGDAVRVSGAKRDDLQSTIALLRKEVTDTPLDFNNFR D >Mature_160_residues PSFDVVSEANMIEVKNAVEQSNKEISTRFDFKGSDARVEQKERELTLYADDDFKLGQVKDVLIGKMAKRNVDVRFLDYGK IEKIGGDKVKQVVTIKKGVSGDLAKKVVRIVKDSKIKVQASIQGDAVRVSGAKRDDLQSTIALLRKEVTDTPLDFNNFRD
Specific function: Unknown
COG id: COG1666
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0234 family
Homologues:
Organism=Escherichia coli, GI87081737, Length=163, Percent_Identity=39.2638036809816, Blast_Score=121, Evalue=2e-29,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y1071_BURP1 (Q3JVC0)
Other databases:
- EMBL: CP000124 - RefSeq: YP_332483.1 - ProteinModelPortal: Q3JVC0 - SMR: Q3JVC0 - STRING: Q3JVC0 - GeneID: 3688878 - GenomeReviews: CP000124_GR - KEGG: bpm:BURPS1710b_1071 - TIGR: BURPS1710b_1071 - eggNOG: COG1666 - HOGENOM: HBG290634 - OMA: LQFTNYR - ProtClustDB: PRK05412 - BioCyc: BPSE320372:BURPS1710B_A1130-MONOMER - HAMAP: MF_00632 - InterPro: IPR007551
Pfam domain/function: PF04461 DUF520
EC number: NA
Molecular weight: Translated: 18036; Mature: 17905
Theoretical pI: Translated: 9.88; Mature: 9.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPSFDVVSEANMIEVKNAVEQSNKEISTRFDFKGSDARVEQKERELTLYADDDFKLGQVK CCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCEEEEEECCCCCCCHHH DVLIGKMAKRNVDVRFLDYGKIEKIGGDKVKQVVTIKKGVSGDLAKKVVRIVKDSKIKVQ HHHHHHHHHCCCCEEEECCCCEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEE ASIQGDAVRVSGAKRDDLQSTIALLRKEVTDTPLDFNNFRD EEECCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure PSFDVVSEANMIEVKNAVEQSNKEISTRFDFKGSDARVEQKERELTLYADDDFKLGQVK CCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCEEEEEECCCCCCCHHH DVLIGKMAKRNVDVRFLDYGKIEKIGGDKVKQVVTIKKGVSGDLAKKVVRIVKDSKIKVQ HHHHHHHHHCCCCEEEECCCCEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEE ASIQGDAVRVSGAKRDDLQSTIALLRKEVTDTPLDFNNFRD EEECCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA