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The map label for this gene is alkB1 [H]

Identifier: 52843190

GI number: 52843190

Start: 3387135

End: 3388301

Strand: Direct

Name: alkB1 [H]

Synonym: lpg2997

Alternate gene names: 52843190

Gene position: 3387135-3388301 (Clockwise)

Preceding gene: 52843189

Following gene: 52843192

Centisome position: 99.69

GC content: 34.7

Gene sequence:

>1167_bases
TTGTCCGTAAATGACCTTTTTTTGTCCTCTAAGACCAAGCAAAGATATCGCCTTTTAAGCTATATTGTTTCTATATTAGG
CTATGCTTGGAATTATAAAATGGATGATTTAAAAAAATATAGTTTTTTACTGGTCTATTTACTTATCCCATTACCCTTTG
TCTCTTTATATTTAGGAGGCTGGTACAGTTTTCTACCCTTTTTTATTGTTTTTGCTTTTATTCCATTAATTGATGCCTTT
CTTCATGATTCGGTAAATCCAACAAAAGAGCAGGAACAAGAACTCCTAAAAGATAAGTTCTTTAAATATATTACTTGCGC
CTATGTGCCTATACAAATAACCATCATTGCTTATGGAGTCTATATAGTTAGTACTCAAAATTTGGTTTGGAATGAATGGT
TAGGATTTACCATGTCACTAGGACTTATCTCAGGTGGAGTAGGCATCAATTTTGCTCATGAAATGATGCATAAAAACAGT
AAATTGCAACAACTAATGAGTAAAATTTTATTGGTTACAGTTTGCTATGGTCATTTTTTTATCGAGCATGTCAAAGGCCA
TCATGTTAAAGTAGCAACGCCTGACGATCCTGCCACAGCACGATTAGGCGAAAATTTATATCAATTTTTACCAAAAACAT
TATTAGGTTCGTTTCAATCTGCCTTAATTTTGGAAGAAAAGCGTTTATCGCATAAAAATTATTCCATCTGGAGCATACAT
AATAATTTTTGGTGGATCCTTACTGTGCCATTAATGATTTGTATAGTCTGTTTCATTTTTGGGGGATTAATCGCTCTGTC
ATTTTTCTTATTACAATCATTCATTGCCATCCTGACATTAGAAATTGTTAATTATATTGAGCACTATGGGCTGGAAAGGA
AAATGCTGAGTAACGGCCAATATGAAAAGGTAAATCCAAATCATTCATGGAATGCTAATCATTGGCTAAGTAATCAGCTG
CTAATTCATTTACAACGCCATTCAGATCACCATGCCCATGGTGCACGACCCTATCAAATTTTACGTCATATGGAGAACAG
CCCTCAACTTCCCTCAGGGTACCTCGGAATGATTATCATAGCTTTAATTCCACCGCTCTGGCATTACATCATGGACAAGA
GAGTTCTTGCCTATCGAATTCAGTTAAGACAATTGGAACAACTTTAA

Upstream 100 bases:

>100_bases
TGCATGCAGATTGACTAATGCCAATAAAAATCAGCTCTATGAAGAGGCATTGAAATTAAAAGAGAGCTAAAAAGAATATT
GATCGCTTATTTCCATAACA

Downstream 100 bases:

>100_bases
AACGTTGTTCCTTATTATTTCACAGTAAAAGAATATTTTATTAACTTTTATTGCAATATGGCGGTGGAATCAAAAACTTT
TATCCGTTTATTTAGTACCG

Product: alkane-1-monooxygenase

Products: NA

Alternate protein names: Alkane hydroxylase; AHs; Terminal alkane hydroxylase [H]

Number of amino acids: Translated: 388; Mature: 387

Protein sequence:

>388_residues
MSVNDLFLSSKTKQRYRLLSYIVSILGYAWNYKMDDLKKYSFLLVYLLIPLPFVSLYLGGWYSFLPFFIVFAFIPLIDAF
LHDSVNPTKEQEQELLKDKFFKYITCAYVPIQITIIAYGVYIVSTQNLVWNEWLGFTMSLGLISGGVGINFAHEMMHKNS
KLQQLMSKILLVTVCYGHFFIEHVKGHHVKVATPDDPATARLGENLYQFLPKTLLGSFQSALILEEKRLSHKNYSIWSIH
NNFWWILTVPLMICIVCFIFGGLIALSFFLLQSFIAILTLEIVNYIEHYGLERKMLSNGQYEKVNPNHSWNANHWLSNQL
LIHLQRHSDHHAHGARPYQILRHMENSPQLPSGYLGMIIIALIPPLWHYIMDKRVLAYRIQLRQLEQL

Sequences:

>Translated_388_residues
MSVNDLFLSSKTKQRYRLLSYIVSILGYAWNYKMDDLKKYSFLLVYLLIPLPFVSLYLGGWYSFLPFFIVFAFIPLIDAF
LHDSVNPTKEQEQELLKDKFFKYITCAYVPIQITIIAYGVYIVSTQNLVWNEWLGFTMSLGLISGGVGINFAHEMMHKNS
KLQQLMSKILLVTVCYGHFFIEHVKGHHVKVATPDDPATARLGENLYQFLPKTLLGSFQSALILEEKRLSHKNYSIWSIH
NNFWWILTVPLMICIVCFIFGGLIALSFFLLQSFIAILTLEIVNYIEHYGLERKMLSNGQYEKVNPNHSWNANHWLSNQL
LIHLQRHSDHHAHGARPYQILRHMENSPQLPSGYLGMIIIALIPPLWHYIMDKRVLAYRIQLRQLEQL
>Mature_387_residues
SVNDLFLSSKTKQRYRLLSYIVSILGYAWNYKMDDLKKYSFLLVYLLIPLPFVSLYLGGWYSFLPFFIVFAFIPLIDAFL
HDSVNPTKEQEQELLKDKFFKYITCAYVPIQITIIAYGVYIVSTQNLVWNEWLGFTMSLGLISGGVGINFAHEMMHKNSK
LQQLMSKILLVTVCYGHFFIEHVKGHHVKVATPDDPATARLGENLYQFLPKTLLGSFQSALILEEKRLSHKNYSIWSIHN
NFWWILTVPLMICIVCFIFGGLIALSFFLLQSFIAILTLEIVNYIEHYGLERKMLSNGQYEKVNPNHSWNANHWLSNQLL
IHLQRHSDHHAHGARPYQILRHMENSPQLPSGYLGMIIIALIPPLWHYIMDKRVLAYRIQLRQLEQL

Specific function: Catalyzes the hydroxylation of n-alkanes in the presence of a NADH-rubredoxin reductase and rubredoxin. It preferably hydroxylases C16-C24 hydrocarbones [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fatty acid desaturase family. AlkB subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005804 [H]

Pfam domain/function: PF00487 FA_desaturase [H]

EC number: =1.14.15.3 [H]

Molecular weight: Translated: 45234; Mature: 45103

Theoretical pI: Translated: 9.06; Mature: 9.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVNDLFLSSKTKQRYRLLSYIVSILGYAWNYKMDDLKKYSFLLVYLLIPLPFVSLYLGG
CCCCHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
WYSFLPFFIVFAFIPLIDAFLHDSVNPTKEQEQELLKDKFFKYITCAYVPIQITIIAYGV
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEHEEHHH
YIVSTQNLVWNEWLGFTMSLGLISGGVGINFAHEMMHKNSKLQQLMSKILLVTVCYGHFF
HEEEECCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
IEHVKGHHVKVATPDDPATARLGENLYQFLPKTLLGSFQSALILEEKRLSHKNYSIWSIH
HHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
NNFWWILTVPLMICIVCFIFGGLIALSFFLLQSFIAILTLEIVNYIEHYGLERKMLSNGQ
CCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCC
YEKVNPNHSWNANHWLSNQLLIHLQRHSDHHAHGARPYQILRHMENSPQLPSGYLGMIII
CCCCCCCCCCCCCHHHCCHHHEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHH
ALIPPLWHYIMDKRVLAYRIQLRQLEQL
HHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SVNDLFLSSKTKQRYRLLSYIVSILGYAWNYKMDDLKKYSFLLVYLLIPLPFVSLYLGG
CCCHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
WYSFLPFFIVFAFIPLIDAFLHDSVNPTKEQEQELLKDKFFKYITCAYVPIQITIIAYGV
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEHEEHHH
YIVSTQNLVWNEWLGFTMSLGLISGGVGINFAHEMMHKNSKLQQLMSKILLVTVCYGHFF
HEEEECCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
IEHVKGHHVKVATPDDPATARLGENLYQFLPKTLLGSFQSALILEEKRLSHKNYSIWSIH
HHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
NNFWWILTVPLMICIVCFIFGGLIALSFFLLQSFIAILTLEIVNYIEHYGLERKMLSNGQ
CCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCC
YEKVNPNHSWNANHWLSNQLLIHLQRHSDHHAHGARPYQILRHMENSPQLPSGYLGMIII
CCCCCCCCCCCCCHHHCCHHHEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHH
ALIPPLWHYIMDKRVLAYRIQLRQLEQL
HHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]