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The map label for this gene is ydaL [H]

Identifier: 52842515

GI number: 52842515

Start: 2606999

End: 2607568

Strand: Direct

Name: ydaL [H]

Synonym: lpg2305

Alternate gene names: 52842515

Gene position: 2606999-2607568 (Clockwise)

Preceding gene: 52842509

Following gene: 52842516

Centisome position: 76.73

GC content: 41.23

Gene sequence:

>570_bases
ATGACTGATGATTTCCTGTCTGATGAGGATAAAGCTCTATTTCGTCATCATATGCGTTCTGTAAAACCATTAAACGAAAA
AACAAAACGCGTAAAAAACCCCACGCAACCCACTCATGAAAAAAAAACCACAACTTTCAAGAGTCAGCCCGTACCCAAAG
AAGAATATTTTTTATCTGATTTTATTCGTGACACTGTTCAACCCGATACTATTTTATCTTTTTCAGAACCAGGCATTCCC
AATCAGAGATTCCGTGCACTAAAAAACGGACAAATTCCATGGGAGGCCAAGCTGGATTTACATGGATTAAAAGCTGAAGC
AGCTCGCCAAGCGCTTTATGATTTTATCCAGACTCAGTCACTCAATAATAAACGCTGCTTACTCATTATTCACGGCAAAG
GAGGCCATCAAGGCGCTCCCCCGGTAATAAAAAACCTAATCAATCGCTGGCTGCCACAATTTAGTCAAGTTCTGGCGTTC
CACAGCGCTCTTCCAAAGGATGGAGGATTGGGAGCTGTGTACGTCTTATTAAAAAGAAACAGAGAAAAGGATGAACAGGG
CAATTACTAG

Upstream 100 bases:

>100_bases
ATTTAAGACGCCCCTTCGCATGGCTCGATTTTCACCTAACCTAAAGAATTACTTCAAATTAAGTTATAATTAAATATATT
CTTTTGATGCCTGTTAAAAA

Downstream 100 bases:

>100_bases
TAACACTTTACTTGCGTTAAAGCAGTAATCTTAGGATAATTCGTCAAATTAAAAAATATCTTGAGTACAGCTATGGAAAA
ATTAGGTCAGTTCATCATCA

Product: Smr domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 189; Mature: 188

Protein sequence:

>189_residues
MTDDFLSDEDKALFRHHMRSVKPLNEKTKRVKNPTQPTHEKKTTTFKSQPVPKEEYFLSDFIRDTVQPDTILSFSEPGIP
NQRFRALKNGQIPWEAKLDLHGLKAEAARQALYDFIQTQSLNNKRCLLIIHGKGGHQGAPPVIKNLINRWLPQFSQVLAF
HSALPKDGGLGAVYVLLKRNREKDEQGNY

Sequences:

>Translated_189_residues
MTDDFLSDEDKALFRHHMRSVKPLNEKTKRVKNPTQPTHEKKTTTFKSQPVPKEEYFLSDFIRDTVQPDTILSFSEPGIP
NQRFRALKNGQIPWEAKLDLHGLKAEAARQALYDFIQTQSLNNKRCLLIIHGKGGHQGAPPVIKNLINRWLPQFSQVLAF
HSALPKDGGLGAVYVLLKRNREKDEQGNY
>Mature_188_residues
TDDFLSDEDKALFRHHMRSVKPLNEKTKRVKNPTQPTHEKKTTTFKSQPVPKEEYFLSDFIRDTVQPDTILSFSEPGIPN
QRFRALKNGQIPWEAKLDLHGLKAEAARQALYDFIQTQSLNNKRCLLIIHGKGGHQGAPPVIKNLINRWLPQFSQVLAFH
SALPKDGGLGAVYVLLKRNREKDEQGNY

Specific function: Unknown

COG id: COG2840

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Smr domain [H]

Homologues:

Organism=Escherichia coli, GI1787602, Length=185, Percent_Identity=29.1891891891892, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI1788671, Length=177, Percent_Identity=29.3785310734463, Blast_Score=69, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002625 [H]

Pfam domain/function: PF01713 Smr [H]

EC number: NA

Molecular weight: Translated: 21643; Mature: 21512

Theoretical pI: Translated: 10.22; Mature: 10.22

Prosite motif: PS50828 SMR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDDFLSDEDKALFRHHMRSVKPLNEKTKRVKNPTQPTHEKKTTTFKSQPVPKEEYFLSD
CCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCHHCCCCCCCCCCHHHHHHHH
FIRDTVQPDTILSFSEPGIPNQRFRALKNGQIPWEAKLDLHGLKAEAARQALYDFIQTQS
HHHHHCCCCCEEECCCCCCCHHHHHHHHCCCCCCEECCCCCCHHHHHHHHHHHHHHHHCC
LNNKRCLLIIHGKGGHQGAPPVIKNLINRWLPQFSQVLAFHSALPKDGGLGAVYVLLKRN
CCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHEECCC
REKDEQGNY
CCCCCCCCC
>Mature Secondary Structure 
TDDFLSDEDKALFRHHMRSVKPLNEKTKRVKNPTQPTHEKKTTTFKSQPVPKEEYFLSD
CCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCHHCCCCCCCCCCHHHHHHHH
FIRDTVQPDTILSFSEPGIPNQRFRALKNGQIPWEAKLDLHGLKAEAARQALYDFIQTQS
HHHHHCCCCCEEECCCCCCCHHHHHHHHCCCCCCEECCCCCCHHHHHHHHHHHHHHHHCC
LNNKRCLLIIHGKGGHQGAPPVIKNLINRWLPQFSQVLAFHSALPKDGGLGAVYVLLKRN
CCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHEECCC
REKDEQGNY
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]