| Definition | Legionella pneumophila subsp. pneumophila str. Philadelphia 1 chromosome, complete genome. |
|---|---|
| Accession | NC_002942 |
| Length | 3,397,754 |
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The map label for this gene is hepA
Identifier: 52842509
GI number: 52842509
Start: 2598385
End: 2601261
Strand: Direct
Name: hepA
Synonym: lpg2299
Alternate gene names: 52842509
Gene position: 2598385-2601261 (Clockwise)
Preceding gene: 52842507
Following gene: 52842515
Centisome position: 76.47
GC content: 39.97
Gene sequence:
>2877_bases ATGACATTTCGCATTGGTCAACGCTGGATAAGTAATACCGAATCACAACTGGGTTTGGGCATTATTACTGAAGTAGATGG CAGACAAGTTTCTATCAGTTTCCCAGCTGCTGGGGAGGATAGAATTTATGCCATAGATAATGCGCCATTAAGCCGCATAG TCTATAAAACAGGTGAAGAAATACTTACCAATGATCAGCAAAGAATAAAAGTAACTTCCATCCAGGAACAAGATGGTGTT TTACTGTATACAGGAAATGACGACTTGGGAAATGTGGCTCAAGTTAGTGAGCTGGCACTTAATTGTTTTATCAAACTTAA CTCCCCTCAACAAAGGCTCTTCAGCGGATTATTGGACAAACTAAATGCTTTTAAACTCAGAATTAAAACATTAGAGCATT TAGGCCGATTACAACAGTCAAAAGCAAGAGGCCTATTAGGTTCACGGACTAACCACCTTATCCACCAAATCTATATCGCT TATGAAGTTGCCCAAAGATTTGCTCCCAGAGTGATGCTTGCCGACGAGGTTGGATTGGGAAAAACCATTGAAGCGGGAAT GATTTTGCATTATCAACTGCATACTGGCCGTGCCTCACGCGTATTAATCATTGTTCCAAATTCATTAATTCACCAATGGT TTGTCGAAATGTTAAGGAGGTTCAATCTGCATTTCTCTATCATTGGTCCAAATCAATACGATGCCATGCCATCCACACTT GATGAGTTGGAAGATAACGACAACCCTATCGAGCCAGCATCAGAAGATGGCAATCTGTTTGAAGGTGAACAACTGGTATT AACCAGCCTGGATTTCCTTATGGAAAATGAAACGGCACGTCAACAGGCATTAGCTGCGCAATGGGATCTTCTGGTAGTAG ATGAGGCGCATCATCTTTATTGGTCGGAAGACTCACAAAGTCCCGAATACACGTTCATTGAAAAATTATCAGCTCGAAGC ACAGGCCTGCTTCTTCTTACTGCGACTCCTGAACAAGTTGGAATGAAGAGTCATTTCGCTCGTCTTCGTCTACTTGATCC AGCACGCTTTTATGATTTTTCAGCCTTTGTAAATGAAGAAAAGCAATACCATGAAATTAATAAAATAGTTCAGGATCTCA TGGATTATAAGGAAAAAAATGGCGTAGATGAGTTAAATCCCCAACTCCACTCTCATTTAAAACAACTCTTGGGTAAAGAA GCTCCTGCTGGCATTAATGCAACGATCAAAGAATTGCTTGATAGATTTGGCACAGGTCGAGTACTTTTTCGCAATACTCG TGCAGCGATTAAAGGATTTCCCGAAAGAAGAATACACCCTGTCGCATTAACATGCCCAGCGCTTTATTCCGAGATAATCA GAGAATCCAACTTAATCCATCTTTACCCTGAAACTTTGCTTAATAATGACTCCTGGATAGAGCATGACCCCCGAGTGCAA TGGCTTGTTAACAAAATTAATGAATTACGTCCGGAAAAAATTCTGGTAATCTGCGCAAAGGCAAAAACAGCCATTAGTCT GGAACAGTATTTAAAATTAAGAACAGGCATTCGAAGTACTTTATTTCATGAAGGACTTACCATTATAGAGCGTGACAGAG CCGCCGCTTATTTTGCAGAACAAGAAAATGGTGCACAGGTTCTTGTTTGTTCCGAGATAGGAAGTGAGGGAAGAAACTTC CAGTTTTCCCATCATTTGGTTTTGTTTGATTTGCCATTAAACCCTGACCTTTTAGAGCAGCGTATCGGGCGTTTGGATCG TATTGGTCAAAATCATCCCATTGAAATTCATGTACCCTATTTAGCGGGTACCGCGCAGGAAAAGCTATTTCGCTGGTATC ACGAAGGAATCAACATTCTTCAACAAAGCTGTTCTGTTGGCTTTTCAATTTTTGAAGTTTTTGAAAATCGGCTGACACCT GTTTTATCCAGTCCCCTACAGGATATTAGCGAGCAATCATTAGAGAAGCTTATTGCTGATACTCAATTGCATACCCAGCA TATTAAGGAAGCCCTTAATGCAGGAAGAGATAGATTACTAGAATTAAACTCCTGTAATTACACTATAGGGAAAGAACTCA TTGAAGCGATAGAAGCAGAAGAAAATTGCCTTGAACTTGAAAATTACATGTCGCAAGTGTATCAGGAGTATGGAATTGAT CAGGAGTATCATTCCGAGAATGCCGAAATATTGCGCCCTGGTAACCACATGAAAACCGCTCATTTTCCTGGGCTAAAAGA AGACGGCATGACCGTCACTTATTCTCGCTCTAAAGCCCTTGTTCGGGAAGACATGGAGTTTTTAAGTTGGGAACACCCCA TGGTTTACGACACTATGGAAATGATCCTGGAGTCAGAACTTGGCAACGCCACAGTGACTACTATTTCAATCAAAAGCATA AAACCGGGTACCCTCTTCCTGGAAACTTTTTATACCATTAATTCTTCCGCCCCTAAATACTTACAACTTGACCGATTTAT TCCTTCATTGCCAATTCGAATTTTGATGGATACTACCGGTAAAAATTTATCAGGCATTTTAAGTTATGAGCAGCTTAATA ATCTGTGCCAACCACTTAAACGTCATCTGGGTTACCCTGTTATTAAACAAGTTCGTGAAGAGATTGAATCCATTCTGCAA CAAACCAACAAAATCGCAGAAGATCAGATGAAATTATTTATTGAAGAAGCAAAATCAACGATGGAGCTAACGACTTCTCA AGAAGTTAATCGACTGGAATCCTTGCAAAAAATTAATCCCGCCATTCGGGATGAAGAAATTGAGTTCTTTAAAAAGAAAA TTTCAGAGAGTAATTACTTCATTAATAGCTCCACTTTAAAGCTTCAAGCGATTCGGGTTGTAATTAATGTCAGTTAG
Upstream 100 bases:
>100_bases CGATGCTTAGGCATCTCCTCAGCCCGAACGAACCCTGCATATCGACTGCTTCTTATATAATCCTTATCCATAATTCATGT TAATGAGGAAGTTTCTCTAA
Downstream 100 bases:
>100_bases TTAATCATCCCTTGACAAATTGACACGATAATAAAAGAAATTGCTTGTCTTACAGGCTGGACGCTGATTTCACAAAATCA ACAACTATTAGATTATTAAC
Product: ATP-dependent helicase HepA
Products: NA
Alternate protein names: ATP-dependent helicase hepA [H]
Number of amino acids: Translated: 958; Mature: 957
Protein sequence:
>958_residues MTFRIGQRWISNTESQLGLGIITEVDGRQVSISFPAAGEDRIYAIDNAPLSRIVYKTGEEILTNDQQRIKVTSIQEQDGV LLYTGNDDLGNVAQVSELALNCFIKLNSPQQRLFSGLLDKLNAFKLRIKTLEHLGRLQQSKARGLLGSRTNHLIHQIYIA YEVAQRFAPRVMLADEVGLGKTIEAGMILHYQLHTGRASRVLIIVPNSLIHQWFVEMLRRFNLHFSIIGPNQYDAMPSTL DELEDNDNPIEPASEDGNLFEGEQLVLTSLDFLMENETARQQALAAQWDLLVVDEAHHLYWSEDSQSPEYTFIEKLSARS TGLLLLTATPEQVGMKSHFARLRLLDPARFYDFSAFVNEEKQYHEINKIVQDLMDYKEKNGVDELNPQLHSHLKQLLGKE APAGINATIKELLDRFGTGRVLFRNTRAAIKGFPERRIHPVALTCPALYSEIIRESNLIHLYPETLLNNDSWIEHDPRVQ WLVNKINELRPEKILVICAKAKTAISLEQYLKLRTGIRSTLFHEGLTIIERDRAAAYFAEQENGAQVLVCSEIGSEGRNF QFSHHLVLFDLPLNPDLLEQRIGRLDRIGQNHPIEIHVPYLAGTAQEKLFRWYHEGINILQQSCSVGFSIFEVFENRLTP VLSSPLQDISEQSLEKLIADTQLHTQHIKEALNAGRDRLLELNSCNYTIGKELIEAIEAEENCLELENYMSQVYQEYGID QEYHSENAEILRPGNHMKTAHFPGLKEDGMTVTYSRSKALVREDMEFLSWEHPMVYDTMEMILESELGNATVTTISIKSI KPGTLFLETFYTINSSAPKYLQLDRFIPSLPIRILMDTTGKNLSGILSYEQLNNLCQPLKRHLGYPVIKQVREEIESILQ QTNKIAEDQMKLFIEEAKSTMELTTSQEVNRLESLQKINPAIRDEEIEFFKKKISESNYFINSSTLKLQAIRVVINVS
Sequences:
>Translated_958_residues MTFRIGQRWISNTESQLGLGIITEVDGRQVSISFPAAGEDRIYAIDNAPLSRIVYKTGEEILTNDQQRIKVTSIQEQDGV LLYTGNDDLGNVAQVSELALNCFIKLNSPQQRLFSGLLDKLNAFKLRIKTLEHLGRLQQSKARGLLGSRTNHLIHQIYIA YEVAQRFAPRVMLADEVGLGKTIEAGMILHYQLHTGRASRVLIIVPNSLIHQWFVEMLRRFNLHFSIIGPNQYDAMPSTL DELEDNDNPIEPASEDGNLFEGEQLVLTSLDFLMENETARQQALAAQWDLLVVDEAHHLYWSEDSQSPEYTFIEKLSARS TGLLLLTATPEQVGMKSHFARLRLLDPARFYDFSAFVNEEKQYHEINKIVQDLMDYKEKNGVDELNPQLHSHLKQLLGKE APAGINATIKELLDRFGTGRVLFRNTRAAIKGFPERRIHPVALTCPALYSEIIRESNLIHLYPETLLNNDSWIEHDPRVQ WLVNKINELRPEKILVICAKAKTAISLEQYLKLRTGIRSTLFHEGLTIIERDRAAAYFAEQENGAQVLVCSEIGSEGRNF QFSHHLVLFDLPLNPDLLEQRIGRLDRIGQNHPIEIHVPYLAGTAQEKLFRWYHEGINILQQSCSVGFSIFEVFENRLTP VLSSPLQDISEQSLEKLIADTQLHTQHIKEALNAGRDRLLELNSCNYTIGKELIEAIEAEENCLELENYMSQVYQEYGID QEYHSENAEILRPGNHMKTAHFPGLKEDGMTVTYSRSKALVREDMEFLSWEHPMVYDTMEMILESELGNATVTTISIKSI KPGTLFLETFYTINSSAPKYLQLDRFIPSLPIRILMDTTGKNLSGILSYEQLNNLCQPLKRHLGYPVIKQVREEIESILQ QTNKIAEDQMKLFIEEAKSTMELTTSQEVNRLESLQKINPAIRDEEIEFFKKKISESNYFINSSTLKLQAIRVVINVS >Mature_957_residues TFRIGQRWISNTESQLGLGIITEVDGRQVSISFPAAGEDRIYAIDNAPLSRIVYKTGEEILTNDQQRIKVTSIQEQDGVL LYTGNDDLGNVAQVSELALNCFIKLNSPQQRLFSGLLDKLNAFKLRIKTLEHLGRLQQSKARGLLGSRTNHLIHQIYIAY EVAQRFAPRVMLADEVGLGKTIEAGMILHYQLHTGRASRVLIIVPNSLIHQWFVEMLRRFNLHFSIIGPNQYDAMPSTLD ELEDNDNPIEPASEDGNLFEGEQLVLTSLDFLMENETARQQALAAQWDLLVVDEAHHLYWSEDSQSPEYTFIEKLSARST GLLLLTATPEQVGMKSHFARLRLLDPARFYDFSAFVNEEKQYHEINKIVQDLMDYKEKNGVDELNPQLHSHLKQLLGKEA PAGINATIKELLDRFGTGRVLFRNTRAAIKGFPERRIHPVALTCPALYSEIIRESNLIHLYPETLLNNDSWIEHDPRVQW LVNKINELRPEKILVICAKAKTAISLEQYLKLRTGIRSTLFHEGLTIIERDRAAAYFAEQENGAQVLVCSEIGSEGRNFQ FSHHLVLFDLPLNPDLLEQRIGRLDRIGQNHPIEIHVPYLAGTAQEKLFRWYHEGINILQQSCSVGFSIFEVFENRLTPV LSSPLQDISEQSLEKLIADTQLHTQHIKEALNAGRDRLLELNSCNYTIGKELIEAIEAEENCLELENYMSQVYQEYGIDQ EYHSENAEILRPGNHMKTAHFPGLKEDGMTVTYSRSKALVREDMEFLSWEHPMVYDTMEMILESELGNATVTTISIKSIK PGTLFLETFYTINSSAPKYLQLDRFIPSLPIRILMDTTGKNLSGILSYEQLNNLCQPLKRHLGYPVIKQVREEIESILQQ TNKIAEDQMKLFIEEAKSTMELTTSQEVNRLESLQKINPAIRDEEIEFFKKKISESNYFINSSTLKLQAIRVVINVS
Specific function: Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on
COG id: COG0553
COG function: function code KL; Superfamily II DNA/RNA helicases, SNF2 family
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI1786245, Length=988, Percent_Identity=42.914979757085, Blast_Score=830, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR022737 - InterPro: IPR000330 [H]
Pfam domain/function: PF00271 Helicase_C; PF12137 RapA_C; PF00176 SNF2_N [H]
EC number: 3.6.1.- [C]
Molecular weight: Translated: 109444; Mature: 109313
Theoretical pI: Translated: 5.36; Mature: 5.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTFRIGQRWISNTESQLGLGIITEVDGRQVSISFPAAGEDRIYAIDNAPLSRIVYKTGEE CCCCCCHHHHCCCCHHCCCEEEEECCCCEEEEECCCCCCCCEEEECCCCHHHHHHHCCHH ILTNDQQRIKVTSIQEQDGVLLYTGNDDLGNVAQVSELALNCFIKLNSPQQRLFSGLLDK HHCCCCCEEEEEEEECCCCEEEEECCCCCCCHHHHHHHHEEEEEEECCHHHHHHHHHHHH LNAFKLRIKTLEHLGRLQQSKARGLLGSRTNHLIHQIYIAYEVAQRFAPRVMLADEVGLG HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCC KTIEAGMILHYQLHTGRASRVLIIVPNSLIHQWFVEMLRRFNLHFSIIGPNQYDAMPSTL CEECCCEEEEEEEECCCCCEEEEECCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHH DELEDNDNPIEPASEDGNLFEGEQLVLTSLDFLMENETARQQALAAQWDLLVVDEAHHLY HHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCEEEEECCCEEE WSEDSQSPEYTFIEKLSARSTGLLLLTATPEQVGMKSHFARLRLLDPARFYDFSAFVNEE ECCCCCCCCHHHHHHHCCCCCCEEEEEECHHHHCHHHHHHHHEECCCHHHHHHHHHHCCH KQYHEINKIVQDLMDYKEKNGVDELNPQLHSHLKQLLGKEAPAGINATIKELLDRFGTGR HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCE VLFRNTRAAIKGFPERRIHPVALTCPALYSEIIRESNLIHLYPETLLNNDSWIEHDPRVQ EEEECCHHHHCCCCCCCCCEEEEECHHHHHHHHHCCCEEEECHHHHCCCCCCCCCCCHHH WLVNKINELRPEKILVICAKAKTAISLEQYLKLRTGIRSTLFHEGLTIIERDRAAAYFAE HHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHEEEE QENGAQVLVCSEIGSEGRNFQFSHHLVLFDLPLNPDLLEQRIGRLDRIGQNHPIEIHVPY CCCCCEEEEEECCCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEECC LAGTAQEKLFRWYHEGINILQQSCSVGFSIFEVFENRLTPVLSSPLQDISEQSLEKLIAD CCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH TQLHTQHIKEALNAGRDRLLELNSCNYTIGKELIEAIEAEENCLELENYMSQVYQEYGID HHHHHHHHHHHHHCCHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC QEYHSENAEILRPGNHMKTAHFPGLKEDGMTVTYSRSKALVREDMEFLSWEHPMVYDTME HHHHCCCCCEECCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCHHHHHHH MILESELGNATVTTISIKSIKPGTLFLETFYTINSSAPKYLQLDRFIPSLPIRILMDTTG HHHHHCCCCEEEEEEEEECCCCCEEEEEEEEEECCCCCCHHHHHHCCCCCCEEEEEECCC KNLSGILSYEQLNNLCQPLKRHLGYPVIKQVREEIESILQQTNKIAEDQMKLFIEEAKST CCHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MELTTSQEVNRLESLQKINPAIRDEEIEFFKKKISESNYFINSSTLKLQAIRVVINVS HHHHHHHHHHHHHHHHHHCCHHCHHHHHHHHHHHCCCCEEEECCCEEEEEEEEEEECC >Mature Secondary Structure TFRIGQRWISNTESQLGLGIITEVDGRQVSISFPAAGEDRIYAIDNAPLSRIVYKTGEE CCCCCHHHHCCCCHHCCCEEEEECCCCEEEEECCCCCCCCEEEECCCCHHHHHHHCCHH ILTNDQQRIKVTSIQEQDGVLLYTGNDDLGNVAQVSELALNCFIKLNSPQQRLFSGLLDK HHCCCCCEEEEEEEECCCCEEEEECCCCCCCHHHHHHHHEEEEEEECCHHHHHHHHHHHH LNAFKLRIKTLEHLGRLQQSKARGLLGSRTNHLIHQIYIAYEVAQRFAPRVMLADEVGLG HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCC KTIEAGMILHYQLHTGRASRVLIIVPNSLIHQWFVEMLRRFNLHFSIIGPNQYDAMPSTL CEECCCEEEEEEEECCCCCEEEEECCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHH DELEDNDNPIEPASEDGNLFEGEQLVLTSLDFLMENETARQQALAAQWDLLVVDEAHHLY HHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCEEEEECCCEEE WSEDSQSPEYTFIEKLSARSTGLLLLTATPEQVGMKSHFARLRLLDPARFYDFSAFVNEE ECCCCCCCCHHHHHHHCCCCCCEEEEEECHHHHCHHHHHHHHEECCCHHHHHHHHHHCCH KQYHEINKIVQDLMDYKEKNGVDELNPQLHSHLKQLLGKEAPAGINATIKELLDRFGTGR HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCE VLFRNTRAAIKGFPERRIHPVALTCPALYSEIIRESNLIHLYPETLLNNDSWIEHDPRVQ EEEECCHHHHCCCCCCCCCEEEEECHHHHHHHHHCCCEEEECHHHHCCCCCCCCCCCHHH WLVNKINELRPEKILVICAKAKTAISLEQYLKLRTGIRSTLFHEGLTIIERDRAAAYFAE HHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHEEEE QENGAQVLVCSEIGSEGRNFQFSHHLVLFDLPLNPDLLEQRIGRLDRIGQNHPIEIHVPY CCCCCEEEEEECCCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEECC LAGTAQEKLFRWYHEGINILQQSCSVGFSIFEVFENRLTPVLSSPLQDISEQSLEKLIAD CCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH TQLHTQHIKEALNAGRDRLLELNSCNYTIGKELIEAIEAEENCLELENYMSQVYQEYGID HHHHHHHHHHHHHCCHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC QEYHSENAEILRPGNHMKTAHFPGLKEDGMTVTYSRSKALVREDMEFLSWEHPMVYDTME HHHHCCCCCEECCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCHHHHHHH MILESELGNATVTTISIKSIKPGTLFLETFYTINSSAPKYLQLDRFIPSLPIRILMDTTG HHHHHCCCCEEEEEEEEECCCCCEEEEEEEEEECCCCCCHHHHHHCCCCCCEEEEEECCC KNLSGILSYEQLNNLCQPLKRHLGYPVIKQVREEIESILQQTNKIAEDQMKLFIEEAKST CCHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MELTTSQEVNRLESLQKINPAIRDEEIEFFKKKISESNYFINSSTLKLQAIRVVINVS HHHHHHHHHHHHHHHHHHCCHHCHHHHHHHHHHHCCCCEEEECCCEEEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA