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The map label for this gene is rlpA [C]

Identifier: 52841738

GI number: 52841738

Start: 1669097

End: 1669918

Strand: Reverse

Name: rlpA [C]

Synonym: lpg1508

Alternate gene names: 52841738

Gene position: 1669918-1669097 (Counterclockwise)

Preceding gene: 52841749

Following gene: 52841737

Centisome position: 49.15

GC content: 39.9

Gene sequence:

>822_bases
ATGCGTAAACTACTTATTGTTTTTTCAATTTTTTTAGCAAGTTGCCAAACTACTCATGACAAACCCGACCTAACAAATAA
AAAACGCCAAACCACTCACACTAAAAACTCTGTCTACGATCGATATAAATACAAGTCCAATCGTTATACAATACAGCAGG
ATGGAGCTCCCAAACAAGCCAAACAGGTAAGCTTTAAAGAACCAGTGCCTGTCAAAGAACCATTAAGCAGATATGGTAAT
CCTTCTGAATATTATGTTGACGGGCGTACTTATGAAGTCATGAAAAGCTCAACAGGGTATAAAACTCGTGGTATTGCCTC
ATGGTATGGAACAAAATTTCATAAACAGCGTACCTCCAGTGGCGAACCCTATAACATGTATGTCATGACTGCTGCCCACA
AAACATTACCTTTGCCGACTTATGTCAAAGTAAGAAACTTGGAAAATGGCAAAGTCGCAATAGTTAAGGTTAATGACAGA
GGGCCATTTCACGCAAATCGTGTCATAGATCTCTCGTACGCTGCCGCATTAAAACTGGGGGTTTTTCCCAAAGGAACTGC
TCATGTTGAAATTGAAACGCTAATGGGGCCTGCTGGGCAAGGCCATTATTATTTGCAGGCAGGAGCCTTTTCTTCAGAAG
CCCTGGCAAAGCGTTTGAAAGAGAAACTACTTCACATTACACCGTCGCCGGTGTTTATTGAACACTATAAACAGCACTAT
ATTGTCCGAGTAGGGCCTTTTGGTAACAAATCAATGGCTGACAACCTTAAAACAAAATTATCAAATAACGGAATAAAGGG
ATCTTTTTCTGTGTTAATTTAA

Upstream 100 bases:

>100_bases
AAGCTAAATTAAGATGCGAATTAATCTAATCGCACTTCGAAAATTATTATTTTTTGGTAATATTAGCAATAACTCATAAC
AACAAGAAATATCAAAGAAT

Downstream 100 bases:

>100_bases
TTTGTTTCGTGGAAAAAACCGGTTAATTTATATCTTTAGAATTAAGAAAAAACCACTCAGAATAGTTTGGGAAAGAAATA
GTTTTAGGTGTAACATTATA

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MRKLLIVFSIFLASCQTTHDKPDLTNKKRQTTHTKNSVYDRYKYKSNRYTIQQDGAPKQAKQVSFKEPVPVKEPLSRYGN
PSEYYVDGRTYEVMKSSTGYKTRGIASWYGTKFHKQRTSSGEPYNMYVMTAAHKTLPLPTYVKVRNLENGKVAIVKVNDR
GPFHANRVIDLSYAAALKLGVFPKGTAHVEIETLMGPAGQGHYYLQAGAFSSEALAKRLKEKLLHITPSPVFIEHYKQHY
IVRVGPFGNKSMADNLKTKLSNNGIKGSFSVLI

Sequences:

>Translated_273_residues
MRKLLIVFSIFLASCQTTHDKPDLTNKKRQTTHTKNSVYDRYKYKSNRYTIQQDGAPKQAKQVSFKEPVPVKEPLSRYGN
PSEYYVDGRTYEVMKSSTGYKTRGIASWYGTKFHKQRTSSGEPYNMYVMTAAHKTLPLPTYVKVRNLENGKVAIVKVNDR
GPFHANRVIDLSYAAALKLGVFPKGTAHVEIETLMGPAGQGHYYLQAGAFSSEALAKRLKEKLLHITPSPVFIEHYKQHY
IVRVGPFGNKSMADNLKTKLSNNGIKGSFSVLI
>Mature_273_residues
MRKLLIVFSIFLASCQTTHDKPDLTNKKRQTTHTKNSVYDRYKYKSNRYTIQQDGAPKQAKQVSFKEPVPVKEPLSRYGN
PSEYYVDGRTYEVMKSSTGYKTRGIASWYGTKFHKQRTSSGEPYNMYVMTAAHKTLPLPTYVKVRNLENGKVAIVKVNDR
GPFHANRVIDLSYAAALKLGVFPKGTAHVEIETLMGPAGQGHYYLQAGAFSSEALAKRLKEKLLHITPSPVFIEHYKQHY
IVRVGPFGNKSMADNLKTKLSNNGIKGSFSVLI

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=158, Percent_Identity=32.9113924050633, Blast_Score=97, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 30815; Mature: 30815

Theoretical pI: Translated: 10.43; Mature: 10.43

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKLLIVFSIFLASCQTTHDKPDLTNKKRQTTHTKNSVYDRYKYKSNRYTIQQDGAPKQA
CCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCHHHHHHHHEECCCCEEEECCCCCCHH
KQVSFKEPVPVKEPLSRYGNPSEYYVDGRTYEVMKSSTGYKTRGIASWYGTKFHKQRTSS
HHCCCCCCCCCHHHHHHCCCCCEEEECCCEEEEEECCCCCCCCCCHHHHCCHHHHHCCCC
GEPYNMYVMTAAHKTLPLPTYVKVRNLENGKVAIVKVNDRGPFHANRVIDLSYAAALKLG
CCCEEEEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEHHHHEEEC
VFPKGTAHVEIETLMGPAGQGHYYLQAGAFSSEALAKRLKEKLLHITPSPVFIEHYKQHY
CCCCCCEEEEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCHHHEECCCEE
IVRVGPFGNKSMADNLKTKLSNNGIKGSFSVLI
EEEECCCCCCHHHHHHHHHHCCCCCCCEEEEEC
>Mature Secondary Structure
MRKLLIVFSIFLASCQTTHDKPDLTNKKRQTTHTKNSVYDRYKYKSNRYTIQQDGAPKQA
CCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCHHHHHHHHEECCCCEEEECCCCCCHH
KQVSFKEPVPVKEPLSRYGNPSEYYVDGRTYEVMKSSTGYKTRGIASWYGTKFHKQRTSS
HHCCCCCCCCCHHHHHHCCCCCEEEECCCEEEEEECCCCCCCCCCHHHHCCHHHHHCCCC
GEPYNMYVMTAAHKTLPLPTYVKVRNLENGKVAIVKVNDRGPFHANRVIDLSYAAALKLG
CCCEEEEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEHHHHEEEC
VFPKGTAHVEIETLMGPAGQGHYYLQAGAFSSEALAKRLKEKLLHITPSPVFIEHYKQHY
CCCCCCEEEEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCHHHEECCCEE
IVRVGPFGNKSMADNLKTKLSNNGIKGSFSVLI
EEEECCCCCCHHHHHHHHHHCCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]