Click here to switch to the map view.

The map label for this gene is slyA [H]

Identifier: 52841440

GI number: 52841440

Start: 1335613

End: 1336032

Strand: Reverse

Name: slyA [H]

Synonym: lpg1208

Alternate gene names: 52841440

Gene position: 1336032-1335613 (Counterclockwise)

Preceding gene: 52841443

Following gene: 52841436

Centisome position: 39.32

GC content: 33.81

Gene sequence:

>420_bases
ATGTATCTTTCCTCTCTGCTAAAAAAAACAAATCGTTTGTTAATCAAGCGAGCCAATGAATTAATTAAACCTTATGCTCT
GAATCATGCCTACACTTATATATTGATGGAACTGTATAATGAAAATGGGTTGACGCAATCTGAATTGGTTCAATTGATTG
AAGTGGAACAACCTACCCTTGTAAGAACTTTGGATCGAATGGAAAGAGATGGATTTATTACTCGAAAACCAAGCTCCATG
GATAGAAGAGTCGTTCATATTTTTCTTACAGAAAAAGCCAGACTTTTGCAAAAAAAATTAGATGAATGTTCTAGAATGCT
TAACCACGAGATACTCGCTGGTTTTTCAGAAGATGAAAAAACAAAATTACAAGAGCTTACTCATCGCGTTCTTGATAATT
TAAGGAATCCCATTGAATAA

Upstream 100 bases:

>100_bases
TGATAGATTGGTAAGCTTTTCATAGATGTCTCCTAAAACAACTTGTAGATAATAACATAGCTTGTTATTATATAGCAAGC
TATTTAATTGTGAGAAATTT

Downstream 100 bases:

>100_bases
TTTATAATGATATTACTAATCGCTTCATTCTATAGCGTCACCAATGTGGGCTTTACTAATTTTTCAAAATCACCAAAAGA
GAGTTGCATCAATTCCGAAT

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MYLSSLLKKTNRLLIKRANELIKPYALNHAYTYILMELYNENGLTQSELVQLIEVEQPTLVRTLDRMERDGFITRKPSSM
DRRVVHIFLTEKARLLQKKLDECSRMLNHEILAGFSEDEKTKLQELTHRVLDNLRNPIE

Sequences:

>Translated_139_residues
MYLSSLLKKTNRLLIKRANELIKPYALNHAYTYILMELYNENGLTQSELVQLIEVEQPTLVRTLDRMERDGFITRKPSSM
DRRVVHIFLTEKARLLQKKLDECSRMLNHEILAGFSEDEKTKLQELTHRVLDNLRNPIE
>Mature_139_residues
MYLSSLLKKTNRLLIKRANELIKPYALNHAYTYILMELYNENGLTQSELVQLIEVEQPTLVRTLDRMERDGFITRKPSSM
DRRVVHIFLTEKARLLQKKLDECSRMLNHEILAGFSEDEKTKLQELTHRVLDNLRNPIE

Specific function: Transcription regulator that can both activate or repress expression [H]

COG id: COG1846

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081950, Length=114, Percent_Identity=34.2105263157895, Blast_Score=61, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR023071
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 16441; Mature: 16441

Theoretical pI: Translated: 9.01; Mature: 9.01

Prosite motif: PS01117 HTH_MARR_1 ; PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYLSSLLKKTNRLLIKRANELIKPYALNHAYTYILMELYNENGLTQSELVQLIEVEQPTL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHH
VRTLDRMERDGFITRKPSSMDRRVVHIFLTEKARLLQKKLDECSRMLNHEILAGFSEDEK
HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
TKLQELTHRVLDNLRNPIE
HHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MYLSSLLKKTNRLLIKRANELIKPYALNHAYTYILMELYNENGLTQSELVQLIEVEQPTL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHH
VRTLDRMERDGFITRKPSSMDRRVVHIFLTEKARLLQKKLDECSRMLNHEILAGFSEDEK
HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
TKLQELTHRVLDNLRNPIE
HHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA