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The map label for this gene is ctpA [H]

Identifier: 52840744

GI number: 52840744

Start: 538358

End: 539695

Strand: Reverse

Name: ctpA [H]

Synonym: lpg0499

Alternate gene names: 52840744

Gene position: 539695-538358 (Counterclockwise)

Preceding gene: 52840745

Following gene: 52840742

Centisome position: 15.88

GC content: 38.79

Gene sequence:

>1338_bases
ATGGTTATTAAGAAACTTTTTTCCAGTACTTTGGCATTGGTTTATGCCCTAACTCTGATGCTGCCTTTGACCGCGTTTTC
GGCTGAAGAAACCAATTCAAATTATTCTAATACAAAACGAATTCCGTTGGAAGATGTGCAACGGTTTTCCAATGCCATCG
GTGAAATAAAGAAATACTATGTCAAACCAGTTGATGATAAAGAATTATTTGATAACGCAATTCGCGGGATGCTAACCGGC
CTTGATCCGCATTCCAGTTATCTCAATGAAGAGGAATTTAAGGAGTTGCAAACATCAACCAGCGGTGAATTTGGTGGTTT
AGGTATCGAAGTGACCATGGAAGAAGGTGTTGTTAAAGTAATCACTCCTCTTGTAGACACTCCAGCATTTAAAGCGGGAA
TCAAATCTGGCGATTATATTATTAAACTGGGTAAAGAGTCCGTTCAAGGTCTTTCTCTTAAAGACGCTGTTAATTTAATG
CGCGGCAAACCAGGTACTACCATAGAATTAACTATCTTGAGAAAAGGTGTAAACAAACCTTTAACTTTTGACTTAATTCG
AGAAGTTATTCAAATAAAAAGTGTAAAAAGCAAAATGCTAAGCGAAGGTTATGGTTACATTCGATTGACTCAATTTCAGG
CTTTAACTGGAAAAGACATGATTAAAGCAATCGAACAATTAAAACAACAAGCAGGCGGGAAATTGAAAGGGTTAGTATTG
GATTTAAGAAATAACCCCGGGGGTTTACTTGATTCAGCTATCCAGGTATCCGATGCTTTTCTTGGCAATGACAAGGCAGG
TAAGCAAGAAATGATAGTCTATACGGAAGGCAGACTACCTGGTTCTAAATTCACCGCCCTGGCCAATCCAGGGGATGTGT
TAGACAATGCGCCTATCGTTGTCTTAATTAATAATGGTTCTGCCTCTGCTTCAGAAATTGTCGCTGGGGCATTAAAAGAT
AATAAAAGAGCTATAATCCTTGGTACAAAGAGTTTTGGAAAAGGATCCGTTCAAACCGTATTACCTCTTGATGGCAAAAC
CGGAATAAAACTAACCACAGCACTTTATTACACTCCATCAGGAGTCTCCATTCAAGCCAAAGGAATAATTCCTGACATCA
TTGTAGAAGAAGTAGACGTTCCTAAAAATGCAGTCAAAAAAGACACTCTCGCTGGTTTTACTGAAGCGGACCTTAATGGG
CACTTGATTAACAAAGACAATTCAGAAAACACTGAATCCAAAAACAACCAAATTCAAACCGGAGATTTAATACACGAGGA
TTATCAGTTATATGCGGCACTCACCGTATTGGAAGGAATGGCGTTAGCTAACAGATAA

Upstream 100 bases:

>100_bases
CGTTAGACTGGTTGTCTTAAAGCTTAGCCGCTGGCATTTAAATTGCATAAAAAAATACGCAGGTGGCTAATTTCATGGCC
TTGCATCTGAGGAGATCGCT

Downstream 100 bases:

>100_bases
TGACCAATTAGTCACTCCCGCCTGAAATCATCGATTCACAATGAACTGATGATTTCAGGTTTTATTTTCTACCTAGACAG
TATGAATCTCGCCATTTTTC

Product: carboxy-terminal protease

Products: NA

Alternate protein names: C-terminal-processing protease [H]

Number of amino acids: Translated: 445; Mature: 445

Protein sequence:

>445_residues
MVIKKLFSSTLALVYALTLMLPLTAFSAEETNSNYSNTKRIPLEDVQRFSNAIGEIKKYYVKPVDDKELFDNAIRGMLTG
LDPHSSYLNEEEFKELQTSTSGEFGGLGIEVTMEEGVVKVITPLVDTPAFKAGIKSGDYIIKLGKESVQGLSLKDAVNLM
RGKPGTTIELTILRKGVNKPLTFDLIREVIQIKSVKSKMLSEGYGYIRLTQFQALTGKDMIKAIEQLKQQAGGKLKGLVL
DLRNNPGGLLDSAIQVSDAFLGNDKAGKQEMIVYTEGRLPGSKFTALANPGDVLDNAPIVVLINNGSASASEIVAGALKD
NKRAIILGTKSFGKGSVQTVLPLDGKTGIKLTTALYYTPSGVSIQAKGIIPDIIVEEVDVPKNAVKKDTLAGFTEADLNG
HLINKDNSENTESKNNQIQTGDLIHEDYQLYAALTVLEGMALANR

Sequences:

>Translated_445_residues
MVIKKLFSSTLALVYALTLMLPLTAFSAEETNSNYSNTKRIPLEDVQRFSNAIGEIKKYYVKPVDDKELFDNAIRGMLTG
LDPHSSYLNEEEFKELQTSTSGEFGGLGIEVTMEEGVVKVITPLVDTPAFKAGIKSGDYIIKLGKESVQGLSLKDAVNLM
RGKPGTTIELTILRKGVNKPLTFDLIREVIQIKSVKSKMLSEGYGYIRLTQFQALTGKDMIKAIEQLKQQAGGKLKGLVL
DLRNNPGGLLDSAIQVSDAFLGNDKAGKQEMIVYTEGRLPGSKFTALANPGDVLDNAPIVVLINNGSASASEIVAGALKD
NKRAIILGTKSFGKGSVQTVLPLDGKTGIKLTTALYYTPSGVSIQAKGIIPDIIVEEVDVPKNAVKKDTLAGFTEADLNG
HLINKDNSENTESKNNQIQTGDLIHEDYQLYAALTVLEGMALANR
>Mature_445_residues
MVIKKLFSSTLALVYALTLMLPLTAFSAEETNSNYSNTKRIPLEDVQRFSNAIGEIKKYYVKPVDDKELFDNAIRGMLTG
LDPHSSYLNEEEFKELQTSTSGEFGGLGIEVTMEEGVVKVITPLVDTPAFKAGIKSGDYIIKLGKESVQGLSLKDAVNLM
RGKPGTTIELTILRKGVNKPLTFDLIREVIQIKSVKSKMLSEGYGYIRLTQFQALTGKDMIKAIEQLKQQAGGKLKGLVL
DLRNNPGGLLDSAIQVSDAFLGNDKAGKQEMIVYTEGRLPGSKFTALANPGDVLDNAPIVVLINNGSASASEIVAGALKD
NKRAIILGTKSFGKGSVQTVLPLDGKTGIKLTTALYYTPSGVSIQAKGIIPDIIVEEVDVPKNAVKKDTLAGFTEADLNG
HLINKDNSENTESKNNQIQTGDLIHEDYQLYAALTVLEGMALANR

Specific function: Involved in protection of the bacterium from thermal and osmotic stresses (Potential) [H]

COG id: COG0793

COG function: function code M; Periplasmic protease

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PDZ (DHR) domain [H]

Homologues:

Organism=Escherichia coli, GI1788134, Length=333, Percent_Identity=29.1291291291291, Blast_Score=117, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478
- InterPro:   IPR005151
- InterPro:   IPR004447 [H]

Pfam domain/function: PF00595 PDZ; PF03572 Peptidase_S41 [H]

EC number: =3.4.21.102 [H]

Molecular weight: Translated: 48116; Mature: 48116

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: PS50106 PDZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVIKKLFSSTLALVYALTLMLPLTAFSAEETNSNYSNTKRIPLEDVQRFSNAIGEIKKYY
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
VKPVDDKELFDNAIRGMLTGLDPHSSYLNEEEFKELQTSTSGEFGGLGIEVTMEEGVVKV
CCCCCHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHCCCCCCCCEEEEEECCCCHHHH
ITPLVDTPAFKAGIKSGDYIIKLGKESVQGLSLKDAVNLMRGKPGTTIELTILRKGVNKP
HHHHHCCCHHHHCCCCCCEEEEECHHHHCCCCHHHHHHHHCCCCCCEEEEEEEECCCCCC
LTFDLIREVIQIKSVKSKMLSEGYGYIRLTQFQALTGKDMIKAIEQLKQQAGGKLKGLVL
CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHCCHHHHHHHHHHHHHHCCCEEEEEE
DLRNNPGGLLDSAIQVSDAFLGNDKAGKQEMIVYTEGRLPGSKFTALANPGDVLDNAPIV
EECCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCEEEECCCCCHHCCCCEE
VLINNGSASASEIVAGALKDNKRAIILGTKSFGKGSVQTVLPLDGKTGIKLTTALYYTPS
EEECCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEECCCCCCEEEEEEEEECCC
GVSIQAKGIIPDIIVEEVDVPKNAVKKDTLAGFTEADLNGHLINKDNSENTESKNNQIQT
CCEEEECCCCHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCC
GDLIHEDYQLYAALTVLEGMALANR
CCHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MVIKKLFSSTLALVYALTLMLPLTAFSAEETNSNYSNTKRIPLEDVQRFSNAIGEIKKYY
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
VKPVDDKELFDNAIRGMLTGLDPHSSYLNEEEFKELQTSTSGEFGGLGIEVTMEEGVVKV
CCCCCHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHCCCCCCCCEEEEEECCCCHHHH
ITPLVDTPAFKAGIKSGDYIIKLGKESVQGLSLKDAVNLMRGKPGTTIELTILRKGVNKP
HHHHHCCCHHHHCCCCCCEEEEECHHHHCCCCHHHHHHHHCCCCCCEEEEEEEECCCCCC
LTFDLIREVIQIKSVKSKMLSEGYGYIRLTQFQALTGKDMIKAIEQLKQQAGGKLKGLVL
CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHCCHHHHHHHHHHHHHHCCCEEEEEE
DLRNNPGGLLDSAIQVSDAFLGNDKAGKQEMIVYTEGRLPGSKFTALANPGDVLDNAPIV
EECCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCEEEECCCCCHHCCCCEE
VLINNGSASASEIVAGALKDNKRAIILGTKSFGKGSVQTVLPLDGKTGIKLTTALYYTPS
EEECCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEECCCCCCEEEEEEEEECCC
GVSIQAKGIIPDIIVEEVDVPKNAVKKDTLAGFTEADLNGHLINKDNSENTESKNNQIQT
CCEEEECCCCHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCC
GDLIHEDYQLYAALTVLEGMALANR
CCHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9141685 [H]