BacMap

Definition	Legionella pneumophila subsp. pneumophila str. Philadelphia 1 chromosome, complete genome.
Accession	NC_002942
Length	3,397,754

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The map label for this gene is rbsA [H]

Identifier: 52840440

GI number: 52840440

Start: 215391

End: 216131

Strand: Reverse

Name: rbsA [H]

Synonym: lpg0185

Alternate gene names: 52840440

Gene position: 216131-215391 (Counterclockwise)

Preceding gene: 52840441

Following gene: 52840439

Centisome position: 6.36

GC content: 36.57

Gene sequence:

>741_bases
ATGATAAATAGCCATCAAACTCAACCTTTACTCAGGTTAGAAAATATTGAAAAAAGTTACGGCTCCCATCGTATTCTCAA
TAAAGTATCTTTTTGCTTATATCCCGGGGAAATTACTGCTTTAATCGGTGATAATGGAGCAGGTAAATCAACCCTGGTAC
AAATCATTTCAGGTTATATTCAAGCAGATAAAGGAAACATTTATTGGCAGGAGCAGCCCTTATGTTATAGCAACCAATAT
AATGCTCCATTTGAAATGAGACGCCTGGGTATACAGATTGTCCATCAACAATTAGCGCTTATTGATGAATTATCTATATG
GCGTAATTTCTTTTTAGGTAATGAAATAAATAAAAAAATAGGTCCTTTCAAATTCTTAAACATCAGGCTTATGCAACATA
TAGCAAGTCAGTCCCTGCAAAGCTTTGGGCTTGTATGCCTTCCAAATATTGATCTGCCGGTCAAAAAACTATCTGGTGGT
GAACGCCAAATGCTAGTCGTTTGTCGCGCAAAATATTTTAATGCAAAGCTACTTATTCTTGACGAGCCAACCAGTGCCCT
CTCACCTGCGCAAGCAGATAAAGTCCTTCAGATCATAAAAAATATAGCTCAAGCCGGAATTGCAATTGTTTTTATAACTC
ATAATCCAGCTCATATACAAAATACCGCACACAAAGTGATCAAGCTTAGTTGCGGAACAATAGAAATAATGGAATTAACT
AACACGCTCATTAAGGGTTAA

Upstream 100 bases:

>100_bases
TAGTACAAATTGGTGTTTCAACTTATTGGTATCGATCTTTTATTGGACTTATTTTAATCTTTGCGATGACTATTAATGTT
TATCTGAGGAAATCTGACTC

Downstream 100 bases:

>100_bases
ACTATGAAAAAATTGGCATCAACTCTCTTGTGTTTCTCGCTACTGATAAGCGCCTCTGTCTTTGCGAGAGATAAATATTA
TTTGATAACCCATGGTTCAC

Product: ABC sugar transporter, ATP binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 246

Protein sequence:

>246_residues
MINSHQTQPLLRLENIEKSYGSHRILNKVSFCLYPGEITALIGDNGAGKSTLVQIISGYIQADKGNIYWQEQPLCYSNQY
NAPFEMRRLGIQIVHQQLALIDELSIWRNFFLGNEINKKIGPFKFLNIRLMQHIASQSLQSFGLVCLPNIDLPVKKLSGG
ERQMLVVCRAKYFNAKLLILDEPTSALSPAQADKVLQIIKNIAQAGIAIVFITHNPAHIQNTAHKVIKLSCGTIEIMELT
NTLIKG

Sequences:

>Translated_246_residues
MINSHQTQPLLRLENIEKSYGSHRILNKVSFCLYPGEITALIGDNGAGKSTLVQIISGYIQADKGNIYWQEQPLCYSNQY
NAPFEMRRLGIQIVHQQLALIDELSIWRNFFLGNEINKKIGPFKFLNIRLMQHIASQSLQSFGLVCLPNIDLPVKKLSGG
ERQMLVVCRAKYFNAKLLILDEPTSALSPAQADKVLQIIKNIAQAGIAIVFITHNPAHIQNTAHKVIKLSCGTIEIMELT
NTLIKG
>Mature_246_residues
MINSHQTQPLLRLENIEKSYGSHRILNKVSFCLYPGEITALIGDNGAGKSTLVQIISGYIQADKGNIYWQEQPLCYSNQY
NAPFEMRRLGIQIVHQQLALIDELSIWRNFFLGNEINKKIGPFKFLNIRLMQHIASQSLQSFGLVCLPNIDLPVKKLSGG
ERQMLVVCRAKYFNAKLLILDEPTSALSPAQADKVLQIIKNIAQAGIAIVFITHNPAHIQNTAHKVIKLSCGTIEIMELT
NTLIKG

Specific function: Part of the ABC transporter complex RbsABCD involved in ribose import. Responsible for energy coupling to the transport system [H]

COG id: COG1129

COG function: function code G; ABC-type sugar transport system, ATPase component

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI21536378, Length=203, Percent_Identity=30.5418719211823, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI153792144, Length=233, Percent_Identity=29.1845493562232, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI31657092, Length=229, Percent_Identity=24.8908296943231, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI148612844, Length=221, Percent_Identity=27.6018099547511, Blast_Score=65, Evalue=8e-11,
Organism=Homo sapiens, GI255708477, Length=222, Percent_Identity=27.027027027027, Blast_Score=65, Evalue=8e-11,
Organism=Homo sapiens, GI27262624, Length=218, Percent_Identity=28.4403669724771, Blast_Score=64, Evalue=1e-10,
Organism=Homo sapiens, GI27262626, Length=218, Percent_Identity=28.4403669724771, Blast_Score=64, Evalue=1e-10,
Organism=Escherichia coli, GI48995001, Length=232, Percent_Identity=30.6034482758621, Blast_Score=135, Evalue=2e-33,
Organism=Escherichia coli, GI1790525, Length=225, Percent_Identity=34.6666666666667, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI1790190, Length=212, Percent_Identity=32.0754716981132, Blast_Score=126, Evalue=1e-30,
Organism=Escherichia coli, GI1788210, Length=215, Percent_Identity=32.093023255814, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1789991, Length=208, Percent_Identity=35.0961538461538, Blast_Score=118, Evalue=3e-28,
Organism=Escherichia coli, GI1788897, Length=234, Percent_Identity=29.4871794871795, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1787792, Length=237, Percent_Identity=32.0675105485232, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1788472, Length=223, Percent_Identity=30.9417040358744, Blast_Score=104, Evalue=6e-24,
Organism=Escherichia coli, GI87081791, Length=225, Percent_Identity=28.4444444444444, Blast_Score=94, Evalue=6e-21,
Organism=Escherichia coli, GI1789873, Length=232, Percent_Identity=26.2931034482759, Blast_Score=94, Evalue=6e-21,
Organism=Escherichia coli, GI1790544, Length=237, Percent_Identity=27.0042194092827, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1787029, Length=230, Percent_Identity=26.9565217391304, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1789593, Length=206, Percent_Identity=28.1553398058252, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1787105, Length=232, Percent_Identity=26.7241379310345, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1786698, Length=238, Percent_Identity=29.4117647058824, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI48994997, Length=242, Percent_Identity=26.4462809917355, Blast_Score=85, Evalue=3e-18,
Organism=Escherichia coli, GI1789891, Length=221, Percent_Identity=32.1266968325792, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI87081834, Length=211, Percent_Identity=31.2796208530806, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1789672, Length=233, Percent_Identity=26.1802575107296, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788165, Length=236, Percent_Identity=29.2372881355932, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787370, Length=228, Percent_Identity=25.4385964912281, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1788761, Length=227, Percent_Identity=26.431718061674, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1788225, Length=227, Percent_Identity=26.8722466960352, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1787712, Length=226, Percent_Identity=26.9911504424779, Blast_Score=80, Evalue=9e-17,
Organism=Escherichia coli, GI1786398, Length=210, Percent_Identity=30, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1789864, Length=236, Percent_Identity=25.4237288135593, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787089, Length=226, Percent_Identity=27.4336283185841, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1786872, Length=227, Percent_Identity=26.8722466960352, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI87082268, Length=238, Percent_Identity=25.2100840336134, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1790739, Length=215, Percent_Identity=27.906976744186, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1790467, Length=227, Percent_Identity=26.431718061674, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI87081709, Length=230, Percent_Identity=24.3478260869565, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1786563, Length=232, Percent_Identity=27.5862068965517, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1789962, Length=243, Percent_Identity=25.9259259259259, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1786253, Length=238, Percent_Identity=26.0504201680672, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI48994943, Length=230, Percent_Identity=27.8260869565217, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1787500, Length=215, Percent_Identity=26.5116279069767, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1788644, Length=231, Percent_Identity=26.4069264069264, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788506, Length=218, Percent_Identity=29.8165137614679, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI87082267, Length=230, Percent_Identity=24.3478260869565, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1786703, Length=198, Percent_Identity=27.7777777777778, Blast_Score=67, Evalue=7e-13,
Organism=Escherichia coli, GI1787759, Length=242, Percent_Identity=26.0330578512397, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786975, Length=219, Percent_Identity=28.310502283105, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789032, Length=229, Percent_Identity=25.764192139738, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI145693107, Length=236, Percent_Identity=25.4237288135593, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1786653, Length=220, Percent_Identity=25.9090909090909, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1787547, Length=262, Percent_Identity=24.0458015267176, Blast_Score=60, Evalue=1e-10,
Organism=Caenorhabditis elegans, GI193211015, Length=241, Percent_Identity=30.7053941908714, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71996809, Length=241, Percent_Identity=30.7053941908714, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI193211017, Length=241, Percent_Identity=30.7053941908714, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17558664, Length=225, Percent_Identity=29.7777777777778, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI17541710, Length=215, Percent_Identity=29.7674418604651, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71988343, Length=237, Percent_Identity=24.8945147679325, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17510237, Length=231, Percent_Identity=25.5411255411255, Blast_Score=64, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17569145, Length=207, Percent_Identity=28.0193236714976, Blast_Score=64, Evalue=8e-11,
Organism=Drosophila melanogaster, GI24666092, Length=249, Percent_Identity=29.718875502008, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI19920532, Length=202, Percent_Identity=28.7128712871287, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI24580930, Length=202, Percent_Identity=28.7128712871287, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI24662800, Length=222, Percent_Identity=29.7297297297297, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24643674, Length=205, Percent_Identity=26.8292682926829, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24659289, Length=199, Percent_Identity=29.6482412060301, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI221500365, Length=207, Percent_Identity=27.0531400966184, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI116007184, Length=207, Percent_Identity=27.0531400966184, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI281363262, Length=219, Percent_Identity=29.2237442922374, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24653245, Length=219, Percent_Identity=29.2237442922374, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI221512771, Length=227, Percent_Identity=25.1101321585903, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI85724858, Length=200, Percent_Identity=25.5, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI85724856, Length=200, Percent_Identity=25.5, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24580547, Length=200, Percent_Identity=25.5, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24580551, Length=200, Percent_Identity=25.5, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24580549, Length=200, Percent_Identity=25.5, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24580545, Length=200, Percent_Identity=25.5, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR015861
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: =3.6.3.17 [H]

Molecular weight: Translated: 27552; Mature: 27552

Theoretical pI: Translated: 9.38; Mature: 9.38

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINSHQTQPLLRLENIEKSYGSHRILNKVSFCLYPGEITALIGDNGAGKSTLVQIISGYI
CCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHEEECCEEEEEECCCCCCHHHHHHHHHHHH
QADKGNIYWQEQPLCYSNQYNAPFEMRRLGIQIVHQQLALIDELSIWRNFFLGNEINKKI
CCCCCCEEECCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC
GPFKFLNIRLMQHIASQSLQSFGLVCLPNIDLPVKKLSGGERQMLVVCRAKYFNAKLLIL
CCCHHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHCCCCCCEEEEEEEHHHCCEEEEEE
DEPTSALSPAQADKVLQIIKNIAQAGIAIVFITHNPAHIQNTAHKVIKLSCGTIEIMELT
ECCCCCCCHHHHHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHHHEEEEECCEEHHHHHH
NTLIKG
HHHHCC
>Mature Secondary Structure
MINSHQTQPLLRLENIEKSYGSHRILNKVSFCLYPGEITALIGDNGAGKSTLVQIISGYI
CCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHEEECCEEEEEECCCCCCHHHHHHHHHHHH
QADKGNIYWQEQPLCYSNQYNAPFEMRRLGIQIVHQQLALIDELSIWRNFFLGNEINKKI
CCCCCCEEECCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC
GPFKFLNIRLMQHIASQSLQSFGLVCLPNIDLPVKKLSGGERQMLVVCRAKYFNAKLLIL
CCCHHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHCCCCCCEEEEEEEHHHCCEEEEEE
DEPTSALSPAQADKVLQIIKNIAQAGIAIVFITHNPAHIQNTAHKVIKLSCGTIEIMELT
ECCCCCCCHHHHHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHHHEEEEECCEEHHHHHH
NTLIKG
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA