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The map label for this gene is rbsC [H]

Identifier: 52840441

GI number: 52840441

Start: 216128

End: 217069

Strand: Reverse

Name: rbsC [H]

Synonym: lpg0186

Alternate gene names: 52840441

Gene position: 217069-216128 (Counterclockwise)

Preceding gene: 52840444

Following gene: 52840440

Centisome position: 6.39

GC content: 35.56

Gene sequence:

>942_bases
ATGTATAAAATACACCATTATTTTTTATTTGGTGTTCTAGTTCCATTTATTAGCCTTGTTAGTCTATTCACTATTTTCTC
TTCTGACTTTTTAACCCTTACTACTTGGGCAAGTATTTTGGCATCCGCCTCTGATATTGGCATCATTGTCCTTGGAGTTA
CTCTTCTGCTTATAGGAGGAGAGTTTGACCTCTCTGTTGGAGCGAATTTTGCTTTATCTGGCTTGCTATTCGGTTCACTT
ACGTTATTAGGAATCAATAGTTTTTTAGCTTTAACAATTGCTTTGGCAATAGGAGCCTGTATAGGATTAATTAATGCCGC
ATGCACCGTCTTTTTTAAAATCCCCTCATTTATTGTAACTTTGGGAAGCATGTTAATTTTACGTAGTCTTATCCTTTTGT
ACACCCAAGGTTTGCCTGTATCTGTTGAGGACACAAATGGTGTTATGCAAGTATTAGCAGGTGAATTATCACAAAATTTA
TTGTCTTCTTTTATTTGGTGGTTTGCTATTGGTTTTTATCTAATCTATCTTCTTAATTGGACAAAACTGGGGAATCATAT
AGTTGCCACTGGTAACAATTGTGATTCCGCTTATCTATCTGGCATAAATACAATTCGAGTTAAATTCTTTTGTTTTGTGT
GTTGTGGAATAATAGCCGCATTTTCCGGAGTAACTCAATTTAGCCACCTTAATAGTTTATCCCCCATTGCGGGTGAACAA
TATGAATTATATGCCATAGCAGCTACCGTAATCGGTGGTACCTCACTAAAAGGAGGTCAAGGATCCATAATAAGTACGCT
ATTGGCTACTTTATTATTAAGCACTGTAGATACCGGCATAGTACAAATTGGTGTTTCAACTTATTGGTATCGATCTTTTA
TTGGACTTATTTTAATCTTTGCGATGACTATTAATGTTTATCTGAGGAAATCTGACTCATGA

Upstream 100 bases:

>100_bases
ACCCGGGTTGAACTTGCCTTCAATGTTCTCTGAAAATTGTGCTTAAAGATCGATAATATTTTGTGTACACTTTCCACAAT
AAATTTCCAGGGATAGTCTC

Downstream 100 bases:

>100_bases
TAAATAGCCATCAAACTCAACCTTTACTCAGGTTAGAAAATATTGAAAAAAGTTACGGCTCCCATCGTATTCTCAATAAA
GTATCTTTTTGCTTATATCC

Product: ABC sugar transporter, permease

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MYKIHHYFLFGVLVPFISLVSLFTIFSSDFLTLTTWASILASASDIGIIVLGVTLLLIGGEFDLSVGANFALSGLLFGSL
TLLGINSFLALTIALAIGACIGLINAACTVFFKIPSFIVTLGSMLILRSLILLYTQGLPVSVEDTNGVMQVLAGELSQNL
LSSFIWWFAIGFYLIYLLNWTKLGNHIVATGNNCDSAYLSGINTIRVKFFCFVCCGIIAAFSGVTQFSHLNSLSPIAGEQ
YELYAIAATVIGGTSLKGGQGSIISTLLATLLLSTVDTGIVQIGVSTYWYRSFIGLILIFAMTINVYLRKSDS

Sequences:

>Translated_313_residues
MYKIHHYFLFGVLVPFISLVSLFTIFSSDFLTLTTWASILASASDIGIIVLGVTLLLIGGEFDLSVGANFALSGLLFGSL
TLLGINSFLALTIALAIGACIGLINAACTVFFKIPSFIVTLGSMLILRSLILLYTQGLPVSVEDTNGVMQVLAGELSQNL
LSSFIWWFAIGFYLIYLLNWTKLGNHIVATGNNCDSAYLSGINTIRVKFFCFVCCGIIAAFSGVTQFSHLNSLSPIAGEQ
YELYAIAATVIGGTSLKGGQGSIISTLLATLLLSTVDTGIVQIGVSTYWYRSFIGLILIFAMTINVYLRKSDS
>Mature_313_residues
MYKIHHYFLFGVLVPFISLVSLFTIFSSDFLTLTTWASILASASDIGIIVLGVTLLLIGGEFDLSVGANFALSGLLFGSL
TLLGINSFLALTIALAIGACIGLINAACTVFFKIPSFIVTLGSMLILRSLILLYTQGLPVSVEDTNGVMQVLAGELSQNL
LSSFIWWFAIGFYLIYLLNWTKLGNHIVATGNNCDSAYLSGINTIRVKFFCFVCCGIIAAFSGVTQFSHLNSLSPIAGEQ
YELYAIAATVIGGTSLKGGQGSIISTLLATLLLSTVDTGIVQIGVSTYWYRSFIGLILIFAMTINVYLRKSDS

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=302, Percent_Identity=33.112582781457, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI1788896, Length=309, Percent_Identity=31.0679611650485, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI1790524, Length=303, Percent_Identity=31.023102310231, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI145693152, Length=306, Percent_Identity=30.3921568627451, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1789992, Length=138, Percent_Identity=36.231884057971, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI87082395, Length=280, Percent_Identity=29.6428571428571, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1787793, Length=294, Percent_Identity=29.2517006802721, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788471, Length=284, Percent_Identity=31.3380281690141, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI145693214, Length=255, Percent_Identity=28.6274509803922, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 33593; Mature: 33593

Theoretical pI: Translated: 6.49; Mature: 6.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYKIHHYFLFGVLVPFISLVSLFTIFSSDFLTLTTWASILASASDIGIIVLGVTLLLIGG
CCEEHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC
EFDLSVGANFALSGLLFGSLTLLGINSFLALTIALAIGACIGLINAACTVFFKIPSFIVT
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGSMLILRSLILLYTQGLPVSVEDTNGVMQVLAGELSQNLLSSFIWWFAIGFYLIYLLNW
HHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TKLGNHIVATGNNCDSAYLSGINTIRVKFFCFVCCGIIAAFSGVTQFSHLNSLSPIAGEQ
HHHCCEEEEECCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
YELYAIAATVIGGTSLKGGQGSIISTLLATLLLSTVDTGIVQIGVSTYWYRSFIGLILIF
EEHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEHHHHHHHHHHHHHHHHH
AMTINVYLRKSDS
HHHHHHHEEECCC
>Mature Secondary Structure
MYKIHHYFLFGVLVPFISLVSLFTIFSSDFLTLTTWASILASASDIGIIVLGVTLLLIGG
CCEEHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC
EFDLSVGANFALSGLLFGSLTLLGINSFLALTIALAIGACIGLINAACTVFFKIPSFIVT
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGSMLILRSLILLYTQGLPVSVEDTNGVMQVLAGELSQNLLSSFIWWFAIGFYLIYLLNW
HHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TKLGNHIVATGNNCDSAYLSGINTIRVKFFCFVCCGIIAAFSGVTQFSHLNSLSPIAGEQ
HHHCCEEEEECCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
YELYAIAATVIGGTSLKGGQGSIISTLLATLLLSTVDTGIVQIGVSTYWYRSFIGLILIF
EEHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEHHHHHHHHHHHHHHHHH
AMTINVYLRKSDS
HHHHHHHEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]