Click here to switch to the map view.

The map label for this gene is ydfI [H]

Identifier: 52787743

GI number: 52787743

Start: 3889813

End: 3890451

Strand: Direct

Name: ydfI [H]

Synonym: BLi04066

Alternate gene names: 52787743

Gene position: 3889813-3890451 (Clockwise)

Preceding gene: 52787742

Following gene: 52787744

Centisome position: 92.12

GC content: 39.75

Gene sequence:

>639_bases
ATGAATAAGGTTTTAATCGTTGATGACCATCTTGTCGTGAGGGAAGGTCTGAAGCTTTTAATTGAAACGAATGATCACTA
CATCATCATAGGAGAGGCGGAAAATGGCAAAGCAGCAGTTCGCCTTGCAGATGAATTAAAACCGGATATTATTCTCATGG
ATTTGTATATGCCGGAGATGAGCGGGTTAGAAGCCATTAAACTAATAAAAGAAAAACACGACATCCCCATCATTATTTTG
ACTACGTATAATGAAGATCACTTAATGATCGAAGGAATTGAATTAGGGGCGAAAGGATATCTATTGAAGGATACAAGTTC
AGAAACCCTTTTTCATACGATGGACGCAGCAATAAGAGGAAACGTGCTATTGCAGCCTGATATCTTAAAACGTCTGCAAG
AAATCCAATTGGAGCGGATGAAGAAGCAGAGCAGTGATACGCAGCTGACAGAAAAGGAAGTCATAGTTCTAAAAGCAATT
GCTAAAGGTCTTAAAAGCAAAGCGATTGCCTTTGATTTGGGCGTCTCTGAGAGAACAGTAAAGTCTAGACTAACGTCCAT
TTACAATAAATTAGGCGCGAATTCAAGAACTGAAGCAGTGACGATTGCCATGCAAAGAGGCGTTCTGACATTAGACTAA

Upstream 100 bases:

>100_bases
GAACGCGTCAGAGCAATGAAAGGCCAATTCAATATAAAGAGTACAACATCTAAAGGAACACAAATTGATATCACTGTACC
AATTCAGGGAGAGATGCCAG

Downstream 100 bases:

>100_bases
TAATATCAAATTAAAATTTGCCCAAACGTACATGCCCGAATGTACGTTTTTTTTATTTCATTGTCCACTACAATGAGAAA
GAATGTGATCAAGCAATGTG

Product: YdfI

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 212; Mature: 212

Protein sequence:

>212_residues
MNKVLIVDDHLVVREGLKLLIETNDHYIIIGEAENGKAAVRLADELKPDIILMDLYMPEMSGLEAIKLIKEKHDIPIIIL
TTYNEDHLMIEGIELGAKGYLLKDTSSETLFHTMDAAIRGNVLLQPDILKRLQEIQLERMKKQSSDTQLTEKEVIVLKAI
AKGLKSKAIAFDLGVSERTVKSRLTSIYNKLGANSRTEAVTIAMQRGVLTLD

Sequences:

>Translated_212_residues
MNKVLIVDDHLVVREGLKLLIETNDHYIIIGEAENGKAAVRLADELKPDIILMDLYMPEMSGLEAIKLIKEKHDIPIIIL
TTYNEDHLMIEGIELGAKGYLLKDTSSETLFHTMDAAIRGNVLLQPDILKRLQEIQLERMKKQSSDTQLTEKEVIVLKAI
AKGLKSKAIAFDLGVSERTVKSRLTSIYNKLGANSRTEAVTIAMQRGVLTLD
>Mature_212_residues
MNKVLIVDDHLVVREGLKLLIETNDHYIIIGEAENGKAAVRLADELKPDIILMDLYMPEMSGLEAIKLIKEKHDIPIIIL
TTYNEDHLMIEGIELGAKGYLLKDTSSETLFHTMDAAIRGNVLLQPDILKRLQEIQLERMKKQSSDTQLTEKEVIVLKAI
AKGLKSKAIAFDLGVSERTVKSRLTSIYNKLGANSRTEAVTIAMQRGVLTLD

Specific function: Member of the two-component regulatory system ydfH/ydfI. Regulates the transcription of ydfJ by binding to its promoter region [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788521, Length=205, Percent_Identity=35.1219512195122, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1788222, Length=213, Percent_Identity=30.9859154929577, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1787473, Length=208, Percent_Identity=34.6153846153846, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1790102, Length=198, Percent_Identity=27.2727272727273, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI1786747, Length=201, Percent_Identity=25.3731343283582, Blast_Score=80, Evalue=7e-17,
Organism=Escherichia coli, GI87082052, Length=114, Percent_Identity=34.2105263157895, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI1786599, Length=121, Percent_Identity=33.0578512396694, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1788712, Length=209, Percent_Identity=25.3588516746411, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1788550, Length=144, Percent_Identity=30.5555555555556, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 23719; Mature: 23719

Theoretical pI: Translated: 6.04; Mature: 6.04

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKVLIVDDHLVVREGLKLLIETNDHYIIIGEAENGKAAVRLADELKPDIILMDLYMPEM
CCCEEEEECCHHHHCCCEEEEECCCCEEEEEECCCCCEEEEEHHHCCCCEEEEEEECCCC
SGLEAIKLIKEKHDIPIIILTTYNEDHLMIEGIELGAKGYLLKDTSSETLFHTMDAAIRG
CCHHHHHHHHHCCCCCEEEEEEECCCEEEEEEEEECCCCEEEECCCCCHHHHHHHHHHCC
NVLLQPDILKRLQEIQLERMKKQSSDTQLTEKEVIVLKAIAKGLKSKAIAFDLGVSERTV
CEEECHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
KSRLTSIYNKLGANSRTEAVTIAMQRGVLTLD
HHHHHHHHHHHCCCCCCCEEEEEEECCEEECC
>Mature Secondary Structure
MNKVLIVDDHLVVREGLKLLIETNDHYIIIGEAENGKAAVRLADELKPDIILMDLYMPEM
CCCEEEEECCHHHHCCCEEEEECCCCEEEEEECCCCCEEEEEHHHCCCCEEEEEEECCCC
SGLEAIKLIKEKHDIPIIILTTYNEDHLMIEGIELGAKGYLLKDTSSETLFHTMDAAIRG
CCHHHHHHHHHCCCCCEEEEEEECCCEEEEEEEEECCCCEEEECCCCCHHHHHHHHHHCC
NVLLQPDILKRLQEIQLERMKKQSSDTQLTEKEVIVLKAIAKGLKSKAIAFDLGVSERTV
CEEECHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
KSRLTSIYNKLGANSRTEAVTIAMQRGVLTLD
HHHHHHHHHHHCCCCCCCEEEEEEECCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]