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The map label for this gene is ydfH [H]

Identifier: 52787742

GI number: 52787742

Start: 3888597

End: 3889820

Strand: Direct

Name: ydfH [H]

Synonym: BLi04065

Alternate gene names: 52787742

Gene position: 3888597-3889820 (Clockwise)

Preceding gene: 52787738

Following gene: 52787743

Centisome position: 92.09

GC content: 41.5

Gene sequence:

>1224_bases
TTGCTGATAAGGAATCCTTTCAAAGAAAAATACTACTCACATGATAGGCGGGCATTAAATATGCTTGCACTCAGAGTGCC
GGGCCTGGCTTTTATTCTCATGATCTATGTCGCCTCTATCGTGCTGCAATTTCTTAATGGGAGCTGGTCCATTTTATTGC
TTAATGTGTTTACGGTATTGACCGCCATCTTTGCTTTGTTGCATTGGCACTCATATCGCTGGGTTAAGAAAAGGGTGATT
CTGTACTTCGTATTACAAGGTTTGATCACTTTTACACTTGCTAATGTCATGTCAGGCTTTTTAGTGCTAATCATCATTGG
CCTTTATGCATTTTTGATCGGACAGATTATAGGAATGGCAGACAGAAGAAAGACGTTCCTCATCCTTTATTTATTGCTTC
TGCTGTCAATCACTGTACTATATCATATTCACAAAGGTGAATATTTGCATTTTCTTGTCATAGCAGTACCTATTATGATC
GTGATTATCACATATGCCGCTACATTTTTTGCCCAAGTCGATGAAAAGACAAAAGCGCAGCTGACTCTTGAAAGGCTGGA
GCTGGCTCATCAGCAGGTAGAACAGCTGACGCTGCAAAACGAGAGACAGCGTATGGCCCGGGACTTGCACGATACGCTTG
CTCAGGGGCTGGTCAGTTTAAATATGCAGCTGGACGCTATTCATGTTCATCTCGCCAAAGACAACACAGAGAGAGCAAAA
GAAATCGTTCAACAATCTATGAATAGAGTGAAAAGCACACTAGCTGATGCACGTTCAGCGATTGACGATCTGCGCAGCAA
ATCAGAAGAAATCGGTTTTTTAAAAGAAAGAATTACCTCATTAATGGATCATTTTCAAGAGTCGACAGGCATGGCTTGCT
TTTTAGACTACAGATTAGACCAAGTGCCGGACGTTCGAACAGCTGAAAACTGTTATTACATCATTGGAGAATGCATAGCG
AATGCCGTAAAGCATGCTGAAGCAGAAACGATCTCAGTGTCCATTTGGGATGATGATAAGAGGAGGCTCCATTTAACCGT
CAAGGATAACGGCAAAGGATTTGATGTTGAAAAAGGCAAGAAAAAGAGAGGACATTATGGGCTTCTCGGCATAGAAGAAC
GCGTCAGAGCAATGAAAGGCCAATTCAATATAAAGAGTACAACATCTAAAGGAACACAAATTGATATCACTGTACCAATT
CAGGGAGAGATGCCAGATGAATAA

Upstream 100 bases:

>100_bases
CTATAAAATGATTGGATAAATATATGTTGACGTTCAATGAAATGGGATCGATTTTCATAAGTCTCTTTTTGGTTAAACTG
TTAAAGGAAGTGGATGAGGT

Downstream 100 bases:

>100_bases
GGTTTTAATCGTTGATGACCATCTTGTCGTGAGGGAAGGTCTGAAGCTTTTAATTGAAACGAATGATCACTACATCATCA
TAGGAGAGGCGGAAAATGGC

Product: YdfH

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 407

Protein sequence:

>407_residues
MLIRNPFKEKYYSHDRRALNMLALRVPGLAFILMIYVASIVLQFLNGSWSILLLNVFTVLTAIFALLHWHSYRWVKKRVI
LYFVLQGLITFTLANVMSGFLVLIIIGLYAFLIGQIIGMADRRKTFLILYLLLLLSITVLYHIHKGEYLHFLVIAVPIMI
VIITYAATFFAQVDEKTKAQLTLERLELAHQQVEQLTLQNERQRMARDLHDTLAQGLVSLNMQLDAIHVHLAKDNTERAK
EIVQQSMNRVKSTLADARSAIDDLRSKSEEIGFLKERITSLMDHFQESTGMACFLDYRLDQVPDVRTAENCYYIIGECIA
NAVKHAEAETISVSIWDDDKRRLHLTVKDNGKGFDVEKGKKKRGHYGLLGIEERVRAMKGQFNIKSTTSKGTQIDITVPI
QGEMPDE

Sequences:

>Translated_407_residues
MLIRNPFKEKYYSHDRRALNMLALRVPGLAFILMIYVASIVLQFLNGSWSILLLNVFTVLTAIFALLHWHSYRWVKKRVI
LYFVLQGLITFTLANVMSGFLVLIIIGLYAFLIGQIIGMADRRKTFLILYLLLLLSITVLYHIHKGEYLHFLVIAVPIMI
VIITYAATFFAQVDEKTKAQLTLERLELAHQQVEQLTLQNERQRMARDLHDTLAQGLVSLNMQLDAIHVHLAKDNTERAK
EIVQQSMNRVKSTLADARSAIDDLRSKSEEIGFLKERITSLMDHFQESTGMACFLDYRLDQVPDVRTAENCYYIIGECIA
NAVKHAEAETISVSIWDDDKRRLHLTVKDNGKGFDVEKGKKKRGHYGLLGIEERVRAMKGQFNIKSTTSKGTQIDITVPI
QGEMPDE
>Mature_407_residues
MLIRNPFKEKYYSHDRRALNMLALRVPGLAFILMIYVASIVLQFLNGSWSILLLNVFTVLTAIFALLHWHSYRWVKKRVI
LYFVLQGLITFTLANVMSGFLVLIIIGLYAFLIGQIIGMADRRKTFLILYLLLLLSITVLYHIHKGEYLHFLVIAVPIMI
VIITYAATFFAQVDEKTKAQLTLERLELAHQQVEQLTLQNERQRMARDLHDTLAQGLVSLNMQLDAIHVHLAKDNTERAK
EIVQQSMNRVKSTLADARSAIDDLRSKSEEIGFLKERITSLMDHFQESTGMACFLDYRLDQVPDVRTAENCYYIIGECIA
NAVKHAEAETISVSIWDDDKRRLHLTVKDNGKGFDVEKGKKKRGHYGLLGIEERVRAMKGQFNIKSTTSKGTQIDITVPI
QGEMPDE

Specific function: Member of the two-component regulatory system ydfH/ydfI. May activate ydfI by phosphorylation [H]

COG id: COG4585

COG function: function code T; Signal transduction histidine kinase

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI1787474, Length=226, Percent_Identity=28.7610619469027, Blast_Score=92, Evalue=7e-20,
Organism=Escherichia coli, GI1788812, Length=220, Percent_Identity=28.6363636363636, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI87082311, Length=229, Percent_Identity=27.9475982532751, Blast_Score=75, Evalue=9e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR000014
- InterPro:   IPR011712 [H]

Pfam domain/function: PF02518 HATPase_c; PF07730 HisKA_3 [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 46598; Mature: 46598

Theoretical pI: Translated: 9.12; Mature: 9.12

Prosite motif: PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIRNPFKEKYYSHDRRALNMLALRVPGLAFILMIYVASIVLQFLNGSWSILLLNVFTVL
CCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
TAIFALLHWHSYRWVKKRVILYFVLQGLITFTLANVMSGFLVLIIIGLYAFLIGQIIGMA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DRRKTFLILYLLLLLSITVLYHIHKGEYLHFLVIAVPIMIVIITYAATFFAQVDEKTKAQ
CCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
LTLERLELAHQQVEQLTLQNERQRMARDLHDTLAQGLVSLNMQLDAIHVHLAKDNTERAK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCHHHHH
EIVQQSMNRVKSTLADARSAIDDLRSKSEEIGFLKERITSLMDHFQESTGMACFLDYRLD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHC
QVPDVRTAENCYYIIGECIANAVKHAEAETISVSIWDDDKRRLHLTVKDNGKGFDVEKGK
CCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCEEEEEEEECCCCCCCCCCCC
KKRGHYGLLGIEERVRAMKGQFNIKSTTSKGTQIDITVPIQGEMPDE
CCCCCCCCCCHHHHHHHHHCCCCEEECCCCCCEEEEEEEECCCCCCC
>Mature Secondary Structure
MLIRNPFKEKYYSHDRRALNMLALRVPGLAFILMIYVASIVLQFLNGSWSILLLNVFTVL
CCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
TAIFALLHWHSYRWVKKRVILYFVLQGLITFTLANVMSGFLVLIIIGLYAFLIGQIIGMA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DRRKTFLILYLLLLLSITVLYHIHKGEYLHFLVIAVPIMIVIITYAATFFAQVDEKTKAQ
CCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
LTLERLELAHQQVEQLTLQNERQRMARDLHDTLAQGLVSLNMQLDAIHVHLAKDNTERAK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCHHHHH
EIVQQSMNRVKSTLADARSAIDDLRSKSEEIGFLKERITSLMDHFQESTGMACFLDYRLD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHC
QVPDVRTAENCYYIIGECIANAVKHAEAETISVSIWDDDKRRLHLTVKDNGKGFDVEKGK
CCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCEEEEEEEECCCCCCCCCCCC
KKRGHYGLLGIEERVRAMKGQFNIKSTTSKGTQIDITVPIQGEMPDE
CCCCCCCCCCHHHHHHHHHCCCCEEECCCCCCEEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]