Click here to switch to the map view.

The map label for this gene is ybfQ [C]

Identifier: 52787263

GI number: 52787263

Start: 3418268

End: 3419236

Strand: Reverse

Name: ybfQ [C]

Synonym: BLi03574

Alternate gene names: 52787263

Gene position: 3419236-3418268 (Counterclockwise)

Preceding gene: 52787264

Following gene: 52787262

Centisome position: 80.97

GC content: 47.68

Gene sequence:

>969_bases
ATGAAGAATCAATACCGAGTATTGTTGTATTATAAATATGTTCATATCGATAACCCTGAGCAATTTGCCGAAGATCACCT
CAAGTTCTGCAAAGATTTGGGGCTGAAGGGGCGCATCCTTGTGGCGGGTGAAGGAATAAACGGAACCGTGTCAGGAACCG
TAGAGCAGACAGACCGCTATATGAGTGAAATGAAAAGCGATCCCCGCTTTGAAGACATGGTATTTAAAATCGATGAATCA
GAAGGGCACGCTTTCAAAAAAATGCATGTCCGCCATCGCGATGAGCTGGTGACGCTCCGCCTGGAAGATGATATCGATCC
GAACGAATTAACAGGAAAATACCTGGAGCCAAAAGAATTTTATGAGGCGATGCAGCAGGAAGATACGATTGTCGTCGACG
CACGGAACGACTATGAGTACGATTTGGGGCATTTCCGCGGAGCGATCAGACCGGACATTAAAGCGTTCCGCGAATTACCT
GAGTGGATCCGCGATAACAAAGAAAAGCTCGAAGGCAAGAAAATATTGACTTACTGCACGGGCGGAATCCGCTGCGAAAA
ATTTTCAGGATGGCTGAAAAAAGAAGGATTTGAAGACGTGTCCCAGCTTCACGGCGGTATTGTAACGTACGGAAAAGACC
CTGAAGTTCAAGGTGAACTGTGGGACGGGAAATGCTATGTTTTCGATGAAAGAATCAGCGTTCCGGTCAATCAGAAAGAG
CACGTCATTGTCGGAAAAGATTATTTCACCGGCGAGCCTTGCGAGCGCTATGTCAACTGCGCAAACCCGGAATGCAACAA
GCAGATCATCTGCTCTGAAGAAAATGAGCACCGCTATTTGCGGGGCTGCACGCACGAGTGCCGGGTTCATCCGCGCAACC
TGTATGTCAAAGAGCACGGCCTTTCAGAAGAAGAGGTGCAAGAGAGACTCGAAAAGCTGAAAGAAGAGGAACATGCAGCG
CAGTCATAA

Upstream 100 bases:

>100_bases
ATGGTTTGTTTTAATATGAATGAAGGTTTGATTATATAAATGGACGGATATTCCATTTTTTATCTTATAAAAACATGCAT
CAGATAGGTGGTAAAGTATC

Downstream 100 bases:

>100_bases
AAGCTGTAAACAAAAGTAACATATAAAAATCGAAGTTGCATTTGCTCCTGCAAGGGAGTCGGCTTTCGGATTGAATGGAG
GAACGCCTTGACCTGAAAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 322

Protein sequence:

>322_residues
MKNQYRVLLYYKYVHIDNPEQFAEDHLKFCKDLGLKGRILVAGEGINGTVSGTVEQTDRYMSEMKSDPRFEDMVFKIDES
EGHAFKKMHVRHRDELVTLRLEDDIDPNELTGKYLEPKEFYEAMQQEDTIVVDARNDYEYDLGHFRGAIRPDIKAFRELP
EWIRDNKEKLEGKKILTYCTGGIRCEKFSGWLKKEGFEDVSQLHGGIVTYGKDPEVQGELWDGKCYVFDERISVPVNQKE
HVIVGKDYFTGEPCERYVNCANPECNKQIICSEENEHRYLRGCTHECRVHPRNLYVKEHGLSEEEVQERLEKLKEEEHAA
QS

Sequences:

>Translated_322_residues
MKNQYRVLLYYKYVHIDNPEQFAEDHLKFCKDLGLKGRILVAGEGINGTVSGTVEQTDRYMSEMKSDPRFEDMVFKIDES
EGHAFKKMHVRHRDELVTLRLEDDIDPNELTGKYLEPKEFYEAMQQEDTIVVDARNDYEYDLGHFRGAIRPDIKAFRELP
EWIRDNKEKLEGKKILTYCTGGIRCEKFSGWLKKEGFEDVSQLHGGIVTYGKDPEVQGELWDGKCYVFDERISVPVNQKE
HVIVGKDYFTGEPCERYVNCANPECNKQIICSEENEHRYLRGCTHECRVHPRNLYVKEHGLSEEEVQERLEKLKEEEHAA
QS
>Mature_322_residues
MKNQYRVLLYYKYVHIDNPEQFAEDHLKFCKDLGLKGRILVAGEGINGTVSGTVEQTDRYMSEMKSDPRFEDMVFKIDES
EGHAFKKMHVRHRDELVTLRLEDDIDPNELTGKYLEPKEFYEAMQQEDTIVVDARNDYEYDLGHFRGAIRPDIKAFRELP
EWIRDNKEKLEGKKILTYCTGGIRCEKFSGWLKKEGFEDVSQLHGGIVTYGKDPEVQGELWDGKCYVFDERISVPVNQKE
HVIVGKDYFTGEPCERYVNCANPECNKQIICSEENEHRYLRGCTHECRVHPRNLYVKEHGLSEEEVQERLEKLKEEEHAA
QS

Specific function: Unknown. [C]

COG id: COG1054

COG function: function code R; Predicted sulfurtransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 rhodanese domain

Homologues:

Organism=Homo sapiens, GI111038120, Length=296, Percent_Identity=33.1081081081081, Blast_Score=165, Evalue=6e-41,
Organism=Escherichia coli, GI1787294, Length=308, Percent_Identity=30.8441558441558, Blast_Score=150, Evalue=1e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y3574_BACLD (Q65EW5)

Other databases:

- EMBL:   AE017333
- EMBL:   CP000002
- RefSeq:   YP_080666.1
- RefSeq:   YP_093092.1
- ProteinModelPortal:   Q65EW5
- STRING:   Q65EW5
- EnsemblBacteria:   EBBACT00000058037
- EnsemblBacteria:   EBBACT00000061350
- GeneID:   3028978
- GeneID:   3100287
- GenomeReviews:   AE017333_GR
- GenomeReviews:   CP000002_GR
- KEGG:   bld:BLi03574
- KEGG:   bli:BL00834
- NMPDR:   fig|279010.5.peg.2033
- eggNOG:   COG1054
- GeneTree:   EBGT00050000002013
- HOGENOM:   HBG366219
- OMA:   ARNDYEY
- ProtClustDB:   PRK00142
- BioCyc:   BLIC279010-1:BLI03574-MONOMER
- BioCyc:   BLIC279010:BL00834-MONOMER
- HAMAP:   MF_00469
- InterPro:   IPR022111
- InterPro:   IPR001763
- InterPro:   IPR020936
- Gene3D:   G3DSA:3.40.250.10
- SMART:   SM00450

Pfam domain/function: PF12368 DUF3650; PF00581 Rhodanese; SSF52821 Rhodanese-like

EC number: NA

Molecular weight: Translated: 37728; Mature: 37728

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: PS50206 RHODANESE_3

Important sites: ACT_SITE 179-179

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNQYRVLLYYKYVHIDNPEQFAEDHLKFCKDLGLKGRILVAGEGINGTVSGTVEQTDRY
CCCCEEEEEEEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHH
MSEMKSDPRFEDMVFKIDESEGHAFKKMHVRHRDELVTLRLEDDIDPNELTGKYLEPKEF
HHHHHCCCCCCCEEEEEECCCCCHHHHHHHHCCCCEEEEEECCCCCHHHCCCCCCCHHHH
YEAMQQEDTIVVDARNDYEYDLGHFRGAIRPDIKAFRELPEWIRDNKEKLEGKKILTYCT
HHHHHCCCEEEEECCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHCCHHHHCCCEEEEEEC
GGIRCEKFSGWLKKEGFEDVSQLHGGIVTYGKDPEVQGELWDGKCYVFDERISVPVNQKE
CCEEEHHHHCHHHHCCHHHHHHHCCCEEEECCCCCCCCEEECCEEEEEECCCCCCCCCCC
HVIVGKDYFTGEPCERYVNCANPECNKQIICSEENEHRYLRGCTHECRVHPRNLYVKEHG
EEEEECCCCCCCHHHHHHCCCCCCCCCEEEECCCCCCHHHHCCCHHHEECCCEEEEECCC
LSEEEVQERLEKLKEEEHAAQS
CCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKNQYRVLLYYKYVHIDNPEQFAEDHLKFCKDLGLKGRILVAGEGINGTVSGTVEQTDRY
CCCCEEEEEEEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHH
MSEMKSDPRFEDMVFKIDESEGHAFKKMHVRHRDELVTLRLEDDIDPNELTGKYLEPKEF
HHHHHCCCCCCCEEEEEECCCCCHHHHHHHHCCCCEEEEEECCCCCHHHCCCCCCCHHHH
YEAMQQEDTIVVDARNDYEYDLGHFRGAIRPDIKAFRELPEWIRDNKEKLEGKKILTYCT
HHHHHCCCEEEEECCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHCCHHHHCCCEEEEEEC
GGIRCEKFSGWLKKEGFEDVSQLHGGIVTYGKDPEVQGELWDGKCYVFDERISVPVNQKE
CCEEEHHHHCHHHHCCHHHHHHHCCCEEEECCCCCCCCEEECCEEEEEECCCCCCCCCCC
HVIVGKDYFTGEPCERYVNCANPECNKQIICSEENEHRYLRGCTHECRVHPRNLYVKEHG
EEEEECCCCCCCHHHHHHCCCCCCCCCEEEECCCCCCHHHHCCCHHHEECCCEEEEECCC
LSEEEVQERLEKLKEEEHAAQS
CCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA