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The map label for this gene is ydhR [H]

Identifier: 52787220

GI number: 52787220

Start: 3371537

End: 3372397

Strand: Reverse

Name: ydhR [H]

Synonym: BLi03529

Alternate gene names: 52787220

Gene position: 3372397-3371537 (Counterclockwise)

Preceding gene: 52787223

Following gene: 52787219

Centisome position: 79.86

GC content: 50.99

Gene sequence:

>861_bases
ATGAAACATTACGGTGCAATAGAAGCAGGAGGCACAAAGTTTGTTTGTGCAGTCGGAACAGAAAAGGGAGAAATCATAGA
CAGGCTGACGATCCCGACGGAGACGCCTGAAGAGACCATTGGAAAGCTGACCGATTTCTTCAGCAAGTATCAGCTCACAT
CAATGGGAGTGGGCTCTTTTGGACCTATATCCGTTGCAAAAAATAAAGAGGATTACGGATACATAACCAATACCCCGAAA
TTAGCCTGGAAGGGGTACCCGTTTATTCCCGAATTGGAAAAAAGGCTTGGCATTCCGGTTTCGTTTACGACTGATGTAAA
CGCTGCCGCGCTTGGAGAGCTGACGAAAGGAGAGGCGCAAGGCCTGGAGAGCTGCTTGTATATCACAGTCGGCACAGGAA
TCGGAGCAGGAGCGATTGTCGGCGGCCGGCTCGTACAGAGCACGCTCCATCCTGAAATGGGTCACCTACTCATTAGACGG
CATCCGCAGGATACGTTTGAAGGAATCTGTCCGTATCACAAGGACTGCCTTGAAGGGATGGCATCGGGCCCGGCGCTTGA
AAAGCGATGGGGGAAAAAGGGCAAGGATTTGGCTGAAAACGAGGAAGTTTGGGAGCTTGAAGCCGACTATTTAGCACAGG
CCCTCATGCAATATATCTTGATTCTGTGCCCTGAAAAAATCATCATGGGCGGCGGTGTCATGAAGCAGCAGCAGCTGTTC
CCGCTGATTCGCAAAAAGCTGGCCGAATATTTGAACGGATATGTCGACCTGCCTGATCTTGAAGAATACATCGTGCCGCC
GGGCCTTGGCGACGATCAGGGAATCACCGGAGCGCTTGCTTTGGCTCATTCCATCGGTTGA

Upstream 100 bases:

>100_bases
CATGCTCTGGTGAACCATTGTTCAGTGCGATTGCTTTCTTTCATCGTCTGATTTATGATTCAATTAGAGCAATTCAAACA
GATGAAAAGGAGCCGAGAGG

Downstream 100 bases:

>100_bases
GCAAGTTGTTTTGTAAAATCCACCCAGTGTGAGATAATAAAAGCGGTGCGTTTAAAAGCATCTGAAAAAAAGAAAGGTGG
TCGTTCAAAATGGTAAGCAG

Product: YdhR

Products: NA

Alternate protein names: Glucomannan utilization protein E [H]

Number of amino acids: Translated: 286; Mature: 286

Protein sequence:

>286_residues
MKHYGAIEAGGTKFVCAVGTEKGEIIDRLTIPTETPEETIGKLTDFFSKYQLTSMGVGSFGPISVAKNKEDYGYITNTPK
LAWKGYPFIPELEKRLGIPVSFTTDVNAAALGELTKGEAQGLESCLYITVGTGIGAGAIVGGRLVQSTLHPEMGHLLIRR
HPQDTFEGICPYHKDCLEGMASGPALEKRWGKKGKDLAENEEVWELEADYLAQALMQYILILCPEKIIMGGGVMKQQQLF
PLIRKKLAEYLNGYVDLPDLEEYIVPPGLGDDQGITGALALAHSIG

Sequences:

>Translated_286_residues
MKHYGAIEAGGTKFVCAVGTEKGEIIDRLTIPTETPEETIGKLTDFFSKYQLTSMGVGSFGPISVAKNKEDYGYITNTPK
LAWKGYPFIPELEKRLGIPVSFTTDVNAAALGELTKGEAQGLESCLYITVGTGIGAGAIVGGRLVQSTLHPEMGHLLIRR
HPQDTFEGICPYHKDCLEGMASGPALEKRWGKKGKDLAENEEVWELEADYLAQALMQYILILCPEKIIMGGGVMKQQQLF
PLIRKKLAEYLNGYVDLPDLEEYIVPPGLGDDQGITGALALAHSIG
>Mature_286_residues
MKHYGAIEAGGTKFVCAVGTEKGEIIDRLTIPTETPEETIGKLTDFFSKYQLTSMGVGSFGPISVAKNKEDYGYITNTPK
LAWKGYPFIPELEKRLGIPVSFTTDVNAAALGELTKGEAQGLESCLYITVGTGIGAGAIVGGRLVQSTLHPEMGHLLIRR
HPQDTFEGICPYHKDCLEGMASGPALEKRWGKKGKDLAENEEVWELEADYLAQALMQYILILCPEKIIMGGGVMKQQQLF
PLIRKKLAEYLNGYVDLPDLEEYIVPPGLGDDQGITGALALAHSIG

Specific function: Seems to be involved in the degradation of glucomannan [H]

COG id: COG1940

COG function: function code KG; Transcriptional regulator/sugar kinase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ROK (nagC/xylR) family [H]

Homologues:

Organism=Escherichia coli, GI87081733, Length=304, Percent_Identity=27.3026315789474, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000600 [H]

Pfam domain/function: PF00480 ROK [H]

EC number: =2.7.1.4 [H]

Molecular weight: Translated: 31077; Mature: 31077

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHYGAIEAGGTKFVCAVGTEKGEIIDRLTIPTETPEETIGKLTDFFSKYQLTSMGVGSF
CCCCCCEECCCCEEEEEECCCCCHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
GPISVAKNKEDYGYITNTPKLAWKGYPFIPELEKRLGIPVSFTTDVNAAALGELTKGEAQ
CCCEEECCCCCCCEEECCCCCEECCCCCCHHHHHHCCCCEEEECCCCHHHHHHHHCHHHH
GLESCLYITVGTGIGAGAIVGGRLVQSTLHPEMGHLLIRRHPQDTFEGICPYHKDCLEGM
HHCEEEEEEECCCCCCHHHHHHHHHHHHHCHHHHHHHHHCCCCHHHHCCCCHHHHHHHHH
ASGPALEKRWGKKGKDLAENEEVWELEADYLAQALMQYILILCPEKIIMGGGVMKQQQLF
HCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHH
PLIRKKLAEYLNGYVDLPDLEEYIVPPGLGDDQGITGALALAHSIG
HHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHCC
>Mature Secondary Structure
MKHYGAIEAGGTKFVCAVGTEKGEIIDRLTIPTETPEETIGKLTDFFSKYQLTSMGVGSF
CCCCCCEECCCCEEEEEECCCCCHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
GPISVAKNKEDYGYITNTPKLAWKGYPFIPELEKRLGIPVSFTTDVNAAALGELTKGEAQ
CCCEEECCCCCCCEEECCCCCEECCCCCCHHHHHHCCCCEEEECCCCHHHHHHHHCHHHH
GLESCLYITVGTGIGAGAIVGGRLVQSTLHPEMGHLLIRRHPQDTFEGICPYHKDCLEGM
HHCEEEEEEECCCCCCHHHHHHHHHHHHHCHHHHHHHHHCCCCHHHHCCCCHHHHHHHHH
ASGPALEKRWGKKGKDLAENEEVWELEADYLAQALMQYILILCPEKIIMGGGVMKQQQLF
HCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHH
PLIRKKLAEYLNGYVDLPDLEEYIVPPGLGDDQGITGALALAHSIG
HHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]